DY260148

Overview
NameDY260148
Unique NameDY260148
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1112
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY260148 vs. ExPASy Swiss-Prot
Match: PER2_HORVU (Peroxidase 2 (Fragment) OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 4.416e-14
Identity = 66/176 (37.50%), Postives = 81/176 (46.02%), Query Frame = 3 
Query:  456 LKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLAN-FDVTTPDVFDNKYFSHLRGRQSPLQSDQKLFSTPGADPAAIVRTLGGTQMLFLKTL*PPMIRKGNFEPPGREIKGEIRIELAEGQWKTVNIGNQIPHPPRGD 980
            L SSF N  L D  DLV+LSGAHTFG A C  F  R    ++  + +P +D  F   LR  C      G L    DV TPDVFDNKY+  L  RQ   +SDQ L   P     A   +L   Q  F +     M +  N +      KGEIR   A    +     ++ P P RGD
Sbjct:    3 LISSFANRSL-DVADLVSLSGAHTFGVAHCPAFEDR----SSRVRHNPAIDGKFATALRNKCSGDNPSGTLTQKLDVRTPDVFDNKYYFDLIARQGLFKSDQGLIDHPTTKRMATRFSL--NQGAFFEQFARSMTKMSNMDIL-TGTKGEIRNNCAVPNRRVRT--SRPPSPARGD 168
The following BLAST results are available for this feature:
BLAST of DY260148 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
PER2_HORVU4.416e-1437.50Peroxidase 2 (Fragment) OS=Hordeum vulgare PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YH10FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260148 ID=DY260148; Name=DY260148; organism=Citrus clementina; type=EST; length=1112bp
CACCATCTCAAGCTTAACTTTCTCCATCTTTTTATTCTTCCACATGCCCT
AATGTATTGAACACTATCGAGGATGTGCTTAAGAAAGCTTTCTCGTCCGA
TATCCGGATCGGTGCCAGCCTCATCAGGCTTCATTTCCATGACTGTTTTG
TTGATGGGTGTGATGCATCGATTTTGCTGGACAGCACTAACACCATAGAC
AGCGAGAAATTTGCTGCGCCAAATAACAATTCGGCGAGGGGTTTTGAAGT
TATTGATAACATGAAAGCTGCCGTTGAAAGGGCATGTCCAAGGGTTGTTT
CCTGCGCTGATATTCTTACTATTGCGGCTGAACGATCCGTTGCTTTGTCA
GGGGGTCCGTCATGGGCAGTTCCATTGGGAAGAAGAGACAGCAGAACGGC
AAACAGAGCTCTTGCAAATCAGAATCTTCCAGGACCATTTGATACTCTTG
ATGAGCTCAAATCTAGTTTTAGAAATGTTGGCCTCAATGACAAGCTTGAT
CTTGTTGCACTCTCCGGAGCACACACGTTCGGAAGGGCTCAGTGCCAATT
TTTCAGGGGCAGATTATACGATTTTAACAACACTGGCAAGCCAGACCCAA
CCCTAGACGCAACCTTCTTACAACAACTGAGGAAACTATGCCCACAAGGT
GGAAACGGCGGCGTTCTTGCTAATTTTGATGTCACGACACCTGATGTTTT
CGACAACAAATACTTCTCCCATCTTAGAGGCCGCCAAAGCCCTCTGCAGA
GTGATCAAAAGTTATTTTCAACTCCTGGGGCCGATCCCGCCGCCATTGTC
AGGACTTTGGGAGGAACCCAAATGCTTTTCTTAAAAACTTTGTGACCCCC
CATGATAAGAAAGGGAAATTTTGAACCCCCCGGCCGGGAAATCAAGGGGG
AAATTAGAATTGAACTGGCGGAGGGGCAATGGAAAACCGTTAATATTGGC
AACCAGATCCCCCATCCCCCAAGGGGGGATTTGGGCCCCTCCCTTTCAAA
ATAACCAGCTTTGCACCATAATGCCCCAAAAATTTTTTGGGGCTTAAAAA
ACCCCCAATTTTAAACCCGGACCGTTTTTTTCCCCGGAAAACATGGTTAT
GTTACCTTTTTC
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