DY260151

Overview
NameDY260151
Unique NameDY260151
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1011
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY260151 vs. ExPASy Swiss-Prot
Match: PPR50_ARATH (Putative pentatricopeptide repeat-containing protein At1g19290 OS=Arabidopsis thaliana GN=At1g19290 PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 8.886e-11
Identity = 49/240 (20.42%), Postives = 106/240 (44.17%), Query Frame = 3 
Query:   66 IPNFNSLIKMVHARGNLKAALLLVDEMVRWGQELSLSVFSALVKGLCASRSHIKACTGLLEKMPKLANKLDQESLNLLIQACCKKGLVRDGKKIFDGMLQRGLTIENESYTTLLMSLCKKGFIKDLHAFWDIAQNRKWLPGLEDCKSLVECLCHKKLLKESLQLFECMLVSCPCLRSDICYIFLEKLCVTGFS-----SNAHALVEELLQQGCNLDQMAYSPLIRGLCKEKSFQLPLKCW 770
            +  +NSLI      G+++    ++  M   G   ++  +++L+KG C  +  ++    + E + +     DQ    +L+   C+ G +RD  ++ D M++ G+        +L+   CK G + +    +    +    P      +LV+  C    + E+L+L + M     C +  +  +    + + G+S      +  +L + +L++G N D+++ S L+  L K   F   +K W
Sbjct:  261 VVTYNSLINGYAMIGDVEGMTRVLRLMSERGVSRNVVTYTSLIKGYC-KKGLMEEAEHVFELLKEKKLVADQHMYGVLMDGYCRTGQIRDAVRVHDNMIEIGVRTNTTICNSLINGYCKSGQLVEAEQIFSRMNDWSLKPDHHTYNTLVDGYCRAGYVDEALKLCDQM-----CQKEVVPTVMTYNILLKGYSRIGAFHDVLSLWKMMLKRGVNADEISCSTLLEALFKLGDFNEAMKLW 494
The following BLAST results are available for this feature:
BLAST of DY260151 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
PPR50_ARATH8.886e-1120.42Putative pentatricopeptide repeat-containing prote... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YH16FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260151 ID=DY260151; Name=DY260151; organism=Citrus clementina; type=EST; length=1011bp
TTTATTTAGACCTAGACCGAGACGAGTATGAGAGAAAACTAAGTAAGATT
ATTGAAGATTCCATGATACCTAATTTTAACTCTCTTATAAAGATGGTACA
TGCACGTGGTAATTTAAAAGCTGCATTGCTGTTGGTAGATGAAATGGTTC
GCTGGGGTCAAGAACTGTCTCTGTCTGTCTTCTCAGCACTAGTAAAGGGG
CTGTGTGCTTCTCGCTCCCATATCAAGGCGTGCACTGGTCTTCTTGAGAA
AATGCCAAAATTGGCCAATAAGCTAGACCAAGAATCTCTCAATTTGCTTA
TTCAAGCATGCTGCAAGAAGGGATTGGTACGTGATGGGAAGAAAATTTTT
GATGGGATGCTTCAGAGGGGTCTAACAATTGAGAATGAGAGTTATACTAC
TCTATTAATGAGTTTGTGTAAGAAAGGCTTCATCAAGGATCTTCATGCTT
TCTGGGATATTGCTCAAAATAGAAAGTGGTTGCCTGGGTTGGAGGATTGC
AAATCACTTGTGGAATGTCTTTGCCATAAAAAATTGCTGAAAGAATCATT
ACAGCTTTTTGAATGCATGTTAGTGTCCTGTCCCTGCTTAAGGTCAGATA
TTTGTTATATATTCCTGGAAAAGCTTTGTGTTACAGGGTTCTCCAGCAAT
GCACATGCCCTGGTGGAAGAACTTCTACAGCAGGGTTGCAACTTGGATCA
AATGGCTTATAGCCCTCTTATAAGAGGGTTATGTAAGGAGAAAAGTTTTC
AGTTGCCTTTAAAATGCTGGACCCCATGCGGGATAAAAAACTGGGCTCCC
TGCTTGGATGTTTTCTGTTTCTTTATTCCCCCGCTGTTCCCAACTGGGAG
AACTGAAAAAGCCGTTCGCTTAAGAAGAGATTAATTTGAAGGAGCCACCT
TTATTTTTGGTTTCCTTCTCCCGTGCCTTCCTAAGTGGGGATTTTGGGGG
ACCGGGAAAGGCCGAAAAACCCCCCAAGTTTTGTTCCAAAAAATGTTTTC
CCCCCGGGGGA
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