DY260166

Overview
NameDY260166
Unique NameDY260166
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length862
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260166 vs. ExPASy Swiss-Prot
Match: CRIP2_HUMAN (Cysteine-rich protein 2 OS=Homo sapiens GN=CRIP2 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.603e-15
Identity = 55/184 (29.89%), Postives = 80/184 (43.48%), Query Frame = 2
Query:  176 KCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYC-RPHFDQLFKRTGS---------LEKSFEGTPKIVKP-EKLVENENAQKVSNK------------FVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYC-KHHHIQLFREKG 655
            KC  CDKTVY  +K+++  + +HK C +C  C  TL        +G  +C +P +  LF   G           EK     P++  P E        +K S              F G  + C  C + VY  EKV+  G  +HR C +C   G T++P  +  H+G+ YC K  +  LF  KG
Sbjct:    4 KCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLFGPKGVNIGGAGSYIYEKPLAEGPQVTGPIEVPAARAEERKASGPPKGPSRASSVTTFTGEPNTCPRCSKKVYFAEKVTSLGKDWHRPCLRCERCGKTLTPGGHAEHDGQPYCHKPCYGILFGPKG 187          
BLAST of DY260166 vs. ExPASy Swiss-Prot
Match: CRIP2_MOUSE (Cysteine-rich protein 2 OS=Mus musculus GN=Crip2 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.570e-15
Identity = 55/184 (29.89%), Postives = 81/184 (44.02%), Query Frame = 2
Query:  176 KCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYC-RPHFDQLFKRTGS---------LEKSFEGTPKIVKP-EKLVENENAQKVSNK------------FVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYC-KHHHIQLFREKG 655
            KC  CDKTVY  +K+++  + +HK C +C  C  TL        +G  +C +P +  LF   G           EK     P++  P E  V     +K S              F G  + C  C++ VY  EKV+  G  +HR C +C     T++P  +  H+G+ YC K  +  LF  KG
Sbjct:    4 KCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCNKTLTPGGHAEHDGKPFCHKPCYATLFGPKGVNIGGAGSYIYEKPQTEAPQVTGPIEVPVVRTEERKTSGPPKGPSKASSVTTFTGEPNMCPRCNKRVYFAEKVTSLGKDWHRPCLRCERCSKTLTPGGHAEHDGQPYCHKPCYGILFGPKG 187          
BLAST of DY260166 vs. ExPASy Swiss-Prot
Match: CRIP2_RAT (Cysteine-rich protein 2 OS=Rattus norvegicus GN=Crip2 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.663e-15
Identity = 55/184 (29.89%), Postives = 81/184 (44.02%), Query Frame = 2
Query:  176 KCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYC-RPHFDQLFKRTGS---------LEKSFEGTPKIVKP-EKLVENENAQKVSNK------------FVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYC-KHHHIQLFREKG 655
            KC  CDKTVY  +K+++  + +HK C +C  C  TL        +G  +C +P +  LF   G           EK     P++  P E  V     +K S              F G  + C  C++ VY  EKV+  G  +HR C +C     T++P  +  H+G+ YC K  +  LF  KG
Sbjct:    4 KCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCNKTLTPGGHAEHDGKPFCHKPCYATLFGPKGVNIGGAGSYIYEKPPTEAPQVTGPIEVPVVRTEERKTSGPPKGPSKASSVTTFTGEPNMCPRCNKRVYFAEKVTSLGKDWHRPCLRCERCSKTLTPGGHAEHDGQPYCHKPCYGILFGPKG 187          
BLAST of DY260166 vs. ExPASy Swiss-Prot
Match: LIMD2_MOUSE (LIM domain-containing protein 2 OS=Mus musculus GN=Limd2 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.772e-14
Identity = 31/70 (44.29%), Postives = 45/70 (64.29%), Query Frame = 2
Query:  170 QQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTGSLEKSF 379
            ++ C AC KTVY +++L AD  ++H +CF C HC   L L ++ +  G  YCRPHF QLFK  G+ ++ F
Sbjct:   38 KETCAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAAMHGEFYCRPHFQQLFKSKGNYDEGF 107          

HSP 2 Score: 68.9366 bits (167), Expect = 4.085e-11
Identity = 27/68 (39.71%), Postives = 40/68 (58.82%), Query Frame = 2
Query:  464 RDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKGNYSQ 667
            ++ C  C +TVYP E++  +   +H SCF C H    +S  +Y A  G+ YC+ H  QLF+ KGNY +
Sbjct:   38 KETCAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAAMHGEFYCRPHFQQLFKSKGNYDE 105          
BLAST of DY260166 vs. ExPASy Swiss-Prot
Match: LIMA1_HUMAN (LIM domain and actin-binding protein 1 OS=Homo sapiens GN=LIMA1 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.772e-14
Identity = 31/74 (41.89%), Postives = 49/74 (66.22%), Query Frame = 2
Query:  170 QQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTGSLEKSFEGTP 391
            ++ C+ C KTVY +++L A+ +V+H +CFRC +C   L L  + S  G +YC+PHF+QLFK  G+ ++ F   P
Sbjct:  387 RETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDEGFGHRP 460          

HSP 2 Score: 75.485 bits (184), Expect = 4.364e-13
Identity = 42/130 (32.31%), Postives = 64/130 (49.23%), Query Frame = 2
Query:  389 PKIVKPEKLVEN---ENAQKVSNKFVG-TRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKGNYSQ----------LESDLEKSQISEKPTPVQIAAQS 736
            PK + P+    +    +  K   KF    R+ CV C +TVYP E++  N   +H SCF+CS+    +S   Y +  G++YCK H  QLF+ KGNY +            S  E  +I E+P  +  A ++
Sbjct:  358 PKPLSPDSRASSLSESSPPKAMKKFQAPARETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDEGFGHRPHKDLWASKNENEEILERPAQLANARET 487          
BLAST of DY260166 vs. ExPASy Swiss-Prot
Match: LIMA1_MOUSE (LIM domain and actin-binding protein 1 OS=Mus musculus GN=Lima1 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 2.314e-14
Identity = 30/70 (42.86%), Postives = 48/70 (68.57%), Query Frame = 2
Query:  170 QQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTGSLEKSF 379
            ++ C+ C KTVY +++L A+ +V+H +CFRC +C   L L  + S  G +YC+PHF+QLFK  G+ ++ F
Sbjct:  385 KESCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDEGF 454          

HSP 2 Score: 75.0998 bits (183), Expect = 5.700e-13
Identity = 35/97 (36.08%), Postives = 54/97 (55.67%), Query Frame = 2
Query:  389 PKIVKPEKLVEN---ENAQKVSNKFVG-TRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKGNYSQ 667
            PK + P+    +    +  K + KF    ++ CV C +TVYP E++  N   +H SCF+CS+    +S   Y +  G++YCK H  QLF+ KGNY +
Sbjct:  356 PKPLSPDARTSSLPESSPSKTAKKFQAPAKESCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDE 452          
BLAST of DY260166 vs. ExPASy Swiss-Prot
Match: LIMD2_RAT (LIM domain-containing protein 2 OS=Rattus norvegicus GN=Limd2 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.947e-14
Identity = 30/70 (42.86%), Postives = 45/70 (64.29%), Query Frame = 2
Query:  170 QQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTGSLEKSF 379
            ++ C AC KTVY +++L AD  ++H +CF C HC   L L ++ +  G  YC+PHF QLFK  G+ ++ F
Sbjct:   38 KETCAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAAMHGEFYCKPHFQQLFKSKGNYDEGF 107          

HSP 2 Score: 70.0922 bits (170), Expect = 1.834e-11
Identity = 28/68 (41.18%), Postives = 40/68 (58.82%), Query Frame = 2
Query:  464 RDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKGNYSQ 667
            ++ C  C +TVYP E++  +   +H SCF C H    +S  +Y A  G+ YCK H  QLF+ KGNY +
Sbjct:   38 KETCAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAAMHGEFYCKPHFQQLFKSKGNYDE 105          
BLAST of DY260166 vs. ExPASy Swiss-Prot
Match: LIMD2_HUMAN (LIM domain-containing protein 2 OS=Homo sapiens GN=LIMD2 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.947e-14
Identity = 30/70 (42.86%), Postives = 45/70 (64.29%), Query Frame = 2
Query:  170 QQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTGSLEKSF 379
            ++ C AC KTVY +++L AD  ++H +CF C HC   L L ++ +  G  YC+PHF QLFK  G+ ++ F
Sbjct:   37 KETCAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAALHGEFYCKPHFQQLFKSKGNYDEGF 106          

HSP 2 Score: 69.707 bits (169), Expect = 2.395e-11
Identity = 28/68 (41.18%), Postives = 40/68 (58.82%), Query Frame = 2
Query:  464 RDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKGNYSQ 667
            ++ C  C +TVYP E++  +   +H SCF C H    +S  +Y A  G+ YCK H  QLF+ KGNY +
Sbjct:   37 KETCAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAALHGEFYCKPHFQQLFKSKGNYDE 104          
BLAST of DY260166 vs. ExPASy Swiss-Prot
Match: LIMD2_BOVIN (LIM domain-containing protein 2 OS=Bos taurus GN=LIMD2 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.947e-14
Identity = 30/70 (42.86%), Postives = 45/70 (64.29%), Query Frame = 2
Query:  170 QQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTGSLEKSF 379
            ++ C AC KTVY +++L AD  ++H +CF C HC   L L ++ +  G  YC+PHF QLFK  G+ ++ F
Sbjct:   38 KETCAACQKTVYPMERLVADKLIFHSSCFCCKHCHTKLSLGSYAALHGEFYCKPHFQQLFKSKGNYDEGF 107          

HSP 2 Score: 69.3218 bits (168), Expect = 3.128e-11
Identity = 28/68 (41.18%), Postives = 40/68 (58.82%), Query Frame = 2
Query:  464 RDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKGNYSQ 667
            ++ C  C +TVYP E++  +   +H SCF C H    +S  +Y A  G+ YCK H  QLF+ KGNY +
Sbjct:   38 KETCAACQKTVYPMERLVADKLIFHSSCFCCKHCHTKLSLGSYAALHGEFYCKPHFQQLFKSKGNYDE 105          
BLAST of DY260166 vs. ExPASy Swiss-Prot
Match: CRIP2_PONAB (Cysteine-rich protein 2 OS=Pongo abelii GN=CRIP2 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.947e-14
Identity = 54/184 (29.35%), Postives = 78/184 (42.39%), Query Frame = 2
Query:  176 KCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYC-RPHFDQLFKRTGS---------LEKSFEGTPKIVKP-EKLVENENAQKVSNK------------FVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYC-KHHHIQLFREKG 655
            KC  CDKTV   +K+++  + +HK C +C  C  TL        +G  +C +P +  LF   G           EK     P++  P E        +K S              F G  + C  C + VY  EKV+  G  +HR C  C   G T++P  +  H+G+ YC K  +  LF  KG
Sbjct:    4 KCPKCDKTVCFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLFGPKGVNIGGAGSYIYEKPLAEGPQVTGPIEVPAARAEERKASGPPKGPSRASSVTTFTGEPNTCPRCSKKVYFAEKVTSLGKDWHRPCLHCERCGKTLTPGGHAEHDGQPYCHKPCYGILFGPKG 187          
The following BLAST results are available for this feature:
BLAST of DY260166 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
CRIP2_HUMAN1.603e-1529.89Cysteine-rich protein 2 OS=Homo sapiens GN=CRIP2 P... [more]
CRIP2_MOUSE3.570e-1529.89Cysteine-rich protein 2 OS=Mus musculus GN=Crip2 P... [more]
CRIP2_RAT4.663e-1529.89Cysteine-rich protein 2 OS=Rattus norvegicus GN=Cr... [more]
LIMD2_MOUSE1.772e-1444.29LIM domain-containing protein 2 OS=Mus musculus GN... [more]
LIMA1_HUMAN1.772e-1441.89LIM domain and actin-binding protein 1 OS=Homo sap... [more]
LIMA1_MOUSE2.314e-1442.86LIM domain and actin-binding protein 1 OS=Mus musc... [more]
LIMD2_RAT3.947e-1442.86LIM domain-containing protein 2 OS=Rattus norvegic... [more]
LIMD2_HUMAN3.947e-1442.86LIM domain-containing protein 2 OS=Homo sapiens GN... [more]
LIMD2_BOVIN3.947e-1442.86LIM domain-containing protein 2 OS=Bos taurus GN=L... [more]
CRIP2_PONAB3.947e-1429.35Cysteine-rich protein 2 OS=Pongo abelii GN=CRIP2 P... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YI13FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260166 ID=DY260166; Name=DY260166; organism=Citrus clementina; type=EST; length=862bp
CTGGTTTTTTCCCCTTACATTTTGGTTTCTTTTTTTCTCCTCATTATCAT
CAATAAAACACAAAAAAAGAAGAAGTTGCTTCTCTTAATATAATAAATCT
GAGGTTCGGTTGGACCGGAAGCTAGCTAGCTAGCAAGCAGCAGCCATGGC
ATCACCCTTTGGAGGAACCCAACAAAAATGCATGGCCTGTGACAAAACTG
TGTACCTTGTTGATAAGTTGACGGCCGATAATCGGGTCTATCACAAAGCT
TGCTTCCGGTGCCACCATTGCAAAGGAACCCTCAAGCTCAGCAACTTCAA
TTCCTTTGAGGGGGTCCTGTATTGCAGGCCTCACTTTGATCAGCTCTTCA
AGAGAACTGGCAGCCTGGAGAAGAGTTTTGAAGGAACACCAAAGATTGTG
AAACCTGAAAAGCTCGTTGAAAATGAGAATGCACAGAAAGTCTCCAACAA
GTTTGTGGGCACCAGAGATAAATGTGTGGGATGCGATAGGACTGTTTATC
CAACTGAGAAGGTTTCTGTAAATGGCGCCGCATATCATAGGAGCTGCTTC
AAGTGCAGCCATGGAGGTTGCACCATCAGCCCATCAAATTATATTGCCCA
TGAGGGGAAACTCTACTGCAAGCATCATCACATACAACTCTTCAGGGAGA
AAGGAAACTACAGCCAGCTTGAGAGTGATCTTGAGAAGAGTCAAATCTCT
GAGAAGCCAACTCCTGTCCAAATTGCTGCCCAATCATAACTTCAAGTGGA
TTTTTTTATTATTAATATTTGTAGAATTTGGTGCGTAAACCGAACTCCTT
TCCGAACTTTGTTGTGGGTGTTTGATCCAATTACAATTTGGGGCACTGAT
GGTATTTCCTTG
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