DY260166

Overview
NameDY260166
Unique NameDY260166
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length862
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260166 vs. ExPASy Swiss-Prot
Match: LIMC_DICDI (LIM domain-containing protein C OS=Dictyostelium discoideum GN=limC PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.794e-14
Identity = 45/170 (26.47%), Postives = 71/170 (41.76%), Query Frame = 2
Query:  179 CMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRT-----GSLEKSFEGTPKIVKPEKLVEN------ENAQKVSNKFVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKG 655
            C  C K VY  + + A  + YHK C +C HC   L+L  ++  +G  YC+  +D+LF++      G +  SFE  PK+     +            ++V  +   T   C  C +  Y  E    N   +H++CF C      +    Y   EG +YC   +   F   G
Sbjct:    5 CPTCTKRVYAAEAVKACEKQYHKLCLQCFHCHKILQLGQYSERDGQPYCKTDYDRLFRQAGYRGGGVVADSFEPAPKVETTTPVEPTPPPTFLTPTEEVKVQLFPT--NCPKCGKKAYFNELKVYNSRDWHKTCFACFSCNKNLVSGQYSEKEGLIYCPRCYQSKFGPSG 172          
BLAST of DY260166 vs. ExPASy Swiss-Prot
Match: MLP2_DROME (Muscle LIM protein Mlp84B OS=Drosophila melanogaster GN=Mlp84B PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.404e-11
Identity = 56/189 (29.63%), Postives = 82/189 (43.39%), Query Frame = 2
Query:  176 KCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTGSLEKSFEGTPKIVKPEK-LVENENAQKVSNKFVGTR------------DKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYI---AHEGKLYCKHHHIQLFREKG-NYSQ----LESD 679
            KC  C K+VY  ++  A   V+HK CF+C  C  +L  +N    E  LYC+    + F   G    +  GT  +    + L EN +   V N   G R            + C  C   VY  E++   G ++H+ CFKC  G C     + +   A +  +YCK  + + F  KG  Y Q    L+SD
Sbjct:   11 KCPRCGKSVYAAEERLAGGYVFHKNCFKCGMCNKSLDSTNCTEHERELYCKTCHGRKFGPKGYGFGTGAGTLSMDNGSQFLRENGDVPSVRN---GARLEPRAIARAPEGEGCPRCGGYVYAAEQMLARGRSWHKECFKC--GTCKKGLDSILCCEAPDKNIYCKGCYAKKFGPKGYGYGQGGGALQSD 194          
The following BLAST results are available for this feature:
BLAST of DY260166 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
LIMC_DICDI8.794e-1426.47LIM domain-containing protein C OS=Dictyostelium d... [more]
MLP2_DROME1.404e-1129.63Muscle LIM protein Mlp84B OS=Drosophila melanogast... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YI13FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260166 ID=DY260166; Name=DY260166; organism=Citrus clementina; type=EST; length=862bp
CTGGTTTTTTCCCCTTACATTTTGGTTTCTTTTTTTCTCCTCATTATCAT
CAATAAAACACAAAAAAAGAAGAAGTTGCTTCTCTTAATATAATAAATCT
GAGGTTCGGTTGGACCGGAAGCTAGCTAGCTAGCAAGCAGCAGCCATGGC
ATCACCCTTTGGAGGAACCCAACAAAAATGCATGGCCTGTGACAAAACTG
TGTACCTTGTTGATAAGTTGACGGCCGATAATCGGGTCTATCACAAAGCT
TGCTTCCGGTGCCACCATTGCAAAGGAACCCTCAAGCTCAGCAACTTCAA
TTCCTTTGAGGGGGTCCTGTATTGCAGGCCTCACTTTGATCAGCTCTTCA
AGAGAACTGGCAGCCTGGAGAAGAGTTTTGAAGGAACACCAAAGATTGTG
AAACCTGAAAAGCTCGTTGAAAATGAGAATGCACAGAAAGTCTCCAACAA
GTTTGTGGGCACCAGAGATAAATGTGTGGGATGCGATAGGACTGTTTATC
CAACTGAGAAGGTTTCTGTAAATGGCGCCGCATATCATAGGAGCTGCTTC
AAGTGCAGCCATGGAGGTTGCACCATCAGCCCATCAAATTATATTGCCCA
TGAGGGGAAACTCTACTGCAAGCATCATCACATACAACTCTTCAGGGAGA
AAGGAAACTACAGCCAGCTTGAGAGTGATCTTGAGAAGAGTCAAATCTCT
GAGAAGCCAACTCCTGTCCAAATTGCTGCCCAATCATAACTTCAAGTGGA
TTTTTTTATTATTAATATTTGTAGAATTTGGTGCGTAAACCGAACTCCTT
TCCGAACTTTGTTGTGGGTGTTTGATCCAATTACAATTTGGGGCACTGAT
GGTATTTCCTTG
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