DY260181

Overview
NameDY260181
Unique NameDY260181
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1081
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY260181 vs. ExPASy Swiss-Prot
Match: SDC10_HUMAN (Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Homo sapiens GN=SDCCAG10 PE=1 SV=1)

HSP 1 Score: 43.1282 bits (100), Expect = 7.538e-11
Identity = 27/76 (35.53%), Postives = 35/76 (46.05%), Query Frame = 1 
Query:   43 QSKMPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGD 270
            Q    N KV    T     AG I +EL++   P+   NF  LC             +Y  + FHRV+PGF+ QGGD
Sbjct:    7 QEPPTNGKVLLKTT-----AGDIDIELWSKEAPKACRNFIQLCL----------EAYYDNTIFHRVVPGFIVQGGD 67

HSP 2 Score: 36.5798 bits (83), Expect = 7.538e-11
Identity = 18/36 (50.00%), Postives = 25/36 (69.44%), Query Frame = 2 
Query:  281 GNGTGGESIYGSKFADENFVK-KHTGPGILSMANAG 385
            G G+GGESIYG+ F DE   + +    G+++MANAG
Sbjct:   70 GTGSGGESIYGAPFKDEFHSRLRFNRRGLVAMANAG 105

HSP 3 Score: 28.1054 bits (61), Expect = 7.538e-11
Identity = 11/25 (44.00%), Postives = 16/25 (64.00%), Query Frame = 3 
Query:  396 NGSQFFVRTAKTEWLDGKHVVFRQV 470
            NGSQFF    + + L+ KH +F +V
Sbjct:  109 NGSQFFFTLGRADELNNKHTIFGKV 133
The following BLAST results are available for this feature:
BLAST of DY260181 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
SDC10_HUMAN7.538e-1135.53Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Ho... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YJ08FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260181 ID=DY260181; Name=DY260181; organism=Citrus clementina; type=EST; length=1081bp
TCAGAAGTCCGTTTTTAGTTTGTTTTTTTCTCTCCAATCAACCAATCAAA
AATGCCAAACCCCAAAGTGTTCTTCGACATGACCGTCGGCGGTCAGCCCG
CCGGCAGGATCGTGATGGAGCTCTTCGCCGATGTCACCCCCCGAACCGCC
GAGAACTTCCGCGCCCTCTGCACCGGCGAGAAAGGCATCGGCAAGTCCGG
CAAGCCACTCCACTACAAGGGCTCGTCCTTCCACCGTGTGATCCCCGGAT
TCATGTGCCAGGGGGGAGACCTTCACCGCCGGAAACGGAACCGGAGGCGA
ATCAATCTACGGCTCAAAATTCGCCGATGAGAACTTCGTGAAGAAGCACA
CCGGCCCCGGAATCCTCTCCATGGCGAATGCCGGACCCCGGAACCAACGG
ATCTCAGTTCTTCGTCCGTACGGCCAAGACCGAGTGGCTCGATGGGAAGC
ACGTTGTGTTCCGTCAAGTCCTCGAAGGAATGGACGTCCTCCAGGCCATC
CAGAAAGTGGGGTCCAGCTCCGGAAGGACCAACAAGCCCCCCGTGATCGC
TGATTGCGGCCCACTGTCCTAGATTTGATCATGATAATGATCGCCATCCT
CACCAACCCCTCTGATCGCCATCGTGACGGTGATTATGTCATCCATTATT
ATGTGGCCGTGTCTGTAGGACTTTTAACTTTTACCCAAATTTCCCGGCCA
CCGTACCTCGTCCGGGCCGACACCGCGCCCCCCGGCGGCGGCCCCCCGAC
CCACCCCCTCCCCCCGGCCCCCCCCACCGGCCGGCCCTTTTACAACCCAT
AGGGCCTGCTCTCGTCAAACAACAAAAAAAAAAAAACACCCGGCCCTTCA
TGGACCAAAATGCCGCATATACAAAAACACATCCTCTCCACCTCTGTACG
AACCACAACCGCCCCCCACCACTCAACAACAAAAACACTCTTTACGCCCC
CCACTCCAAAACCCCCCCACACAAGAACCCACACACACCGCGACCACGCC
CCTCACCCCCCTCCCCCTCCCCGCCCCCCCCCGCTCCCTCCCCTCCCGTA
CTCTCCTCTCCCCCCCCGCCACACTACACCC
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