DY260235

Overview
NameDY260235
Unique NameDY260235
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1038
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260235 vs. ExPASy Swiss-Prot
Match: NUON_RHIEC (NADH-quinone oxidoreductase subunit N OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=nuoN PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.561e-18
Identity = 49/129 (37.98%), Postives = 78/129 (60.47%), Query Frame = 3
Query:    3 IGHACYIPTGFPCGTIEGIPSLLIGIFIYALMTIDAFAIVLALRQ---TRVKYIAGLGPLAKTNPISAITFSLTMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLASVGVVTSVIGCWAAGRLPRVSQF 380
            IGH  Y   G   G   G+  +++ + IY +MT+  FAI++++R+   T V+ +  L  L+ TNP  A+  +  MFS AGIPPLAGF +K+++F AA+    Y LA +GV+ SV+G +   R+ ++  F
Sbjct:  306 IGHMGYALVGLAAGNQTGVSGVMLYMVIYMIMTLGTFAIIMSMRRKDGTVVEDVNDLAGLSATNPFMAVVLTALMFSLAGIPPLAGFFAKYFVFVAAIEAKLYALAIIGVLASVVGAYYYLRVIKLMWF 434          
BLAST of DY260235 vs. ExPASy Swiss-Prot
Match: NUON_PARL1 (NADH-quinone oxidoreductase subunit N OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=nuoN PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 2.038e-18
Identity = 49/128 (38.28%), Postives = 75/128 (58.59%), Query Frame = 3
Query:    3 IGHACYIPTGFPCGTIEGIPSLLIGIFIYALMTIDAFAIVLALRQTR--VKYIAGLGPLAKTNPISAITFSLTMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLASVGVVTSVIGCWAAGRLPRVSQF 380
            I H  +   G   GT EG+  +LI + IY +M    F  +LA+++    V+ I+ L  L++  P+ A   ++ MFS AG+PPLAGF  KFY+F AA+  G Y LA +GV+ SV+G +   R+ ++  F
Sbjct:  307 ISHMGFAMVGLAAGTPEGVRGVLIYLVIYVVMNAGVFCCILAMQRKEGYVENISDLAGLSRNQPMVAFMMAMLMFSLAGVPPLAGFFGKFYVFMAAVEAGLYPLAVIGVLASVVGAFYYLRIVKIMYF 434          
BLAST of DY260235 vs. ExPASy Swiss-Prot
Match: NUON_BARBK (NADH-quinone oxidoreductase subunit N OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=nuoN PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 2.038e-18
Identity = 56/132 (42.42%), Postives = 75/132 (56.82%), Query Frame = 3
Query:    3 IGHACYIPTGFPCGTIEGIPSLLIGIFIYALMTIDAFAIVLALRQTR--VKYIAGLGPLAKTNPISAITFSLTMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLASVGVVTSVIGCWAAGRLPRVSQFGGPK 392
            IGH  Y   G   G I G+  +LI + IY  MTI +FA +L +R +   V+ I  L  L KTNP  AI  ++ +FS A IPP+AGF  K+Y F AA+  G   LA VG+V SVIG +   R+ ++  F   K
Sbjct:  312 IGHMGYALVGLAAGNILGVKGILIYMTIYLGMTIGSFAFILGMRFSNRYVENIYDLAGLVKTNPFMAIVMTIQLFSLASIPPMAGFFGKWYTFSAAVRAGLVPLAIVGMVLSVIGAFYYLRIIKIMWFDDAK 443          
BLAST of DY260235 vs. ExPASy Swiss-Prot
Match: NUON_RHOCS (NADH-quinone oxidoreductase subunit N OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=nuoN PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.662e-18
Identity = 51/138 (36.96%), Postives = 77/138 (55.80%), Query Frame = 3
Query:    3 IGHACYIPTGFPCGTIEGIPSLLIGIFIYALMTIDAFAIVLALRQT--RVKYIAGLGPLAKTNPISAITFSLTMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLASVGVVTSVIGCWAAGRLPRVSQFGGPKAVLRAP 410
            IGH  Y   G   GT EG+  +LI + IY  M +  FA++L++R     V+ I  L  L++++P+ A+  +  MFS  G+PP+AGF  K Y+F AA+    Y LA +GV+TSVI  +   R+ +V  F      +  P
Sbjct:  304 IGHIGYALVGLAAGTEEGVRGVLIYLAIYLAMNVGTFAVILSMRVNGRMVENIDDLSGLSRSHPMMALAMAFFMFSLGGVPPMAGFFGKLYVFMAAIEAQLYVLAVIGVLTSVISLFYYLRIVKVMWFDDLMETIERP 441          
BLAST of DY260235 vs. ExPASy Swiss-Prot
Match: NUON_BEII9 (NADH-quinone oxidoreductase subunit N OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=nuoN PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.726e-17
Identity = 53/138 (38.41%), Postives = 76/138 (55.07%), Query Frame = 3
Query:    3 IGHACYIPTGFPCGTIEGIPSLLIGIFIYALMTIDAFAIVLALRQT--RVKYIAGLGPLAKTNPISAITFSLTMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLASVGVVTSVIGCWAAGRLPRVSQFGGPKAVLRAP 410
            IGH  +   G   GT  GI  +L  + IY +MT+  FA +L++R     V+ I+ L  LA+T    A   ++ MFS AGIPPLAGF +K+Y+F AA+    Y LA +GV+ S +G +   R+ +V  F  P      P
Sbjct:  303 IGHMGFALVGLAAGTETGIQGVLAYMAIYLVMTLGTFAAILSMRVNGVNVEQISDLAGLARTRGSMAFFLAIMMFSLAGIPPLAGFFAKWYVFNAAIQAHLYPLAVIGVLCSTVGAYYYLRIVKVMYFDDPAPAFDRP 440          
BLAST of DY260235 vs. ExPASy Swiss-Prot
Match: NUON1_ACICJ (NADH-quinone oxidoreductase subunit N 1 OS=Acidiphilium cryptum (strain JF-5) GN=nuoN1 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 5.021e-17
Identity = 51/128 (39.84%), Postives = 74/128 (57.81%), Query Frame = 3
Query:    3 IGHACYIPTGFPCGTIEGIPSLLIGIFIYALMTIDAFAIVLALRQTR--VKYIAGLGPLAKTNPISAITFSLTMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLASVGVVTSVIGCWAAGRLPRVSQF 380
            IGH  Y   G   GT  G+   LI + IY +M++  F  ++A+ + R  V+ IA L  +A  +P  A   ++ M+S AGIPPLAGF  KFY+F AA+  G   LA +G++TSVI  +   R+ +V  F
Sbjct:  299 IGHMGYALMGLAAGTAAGVSGALIYLAIYLVMSLGTFGCIIAMSRGRQPVERIADLAGMASDDPRFAFVLAVMMWSMAGIPPLAGFFGKFYVFAAAINAGLGPLAVLGIITSVIAAFYYLRVIKVMYF 426          
BLAST of DY260235 vs. ExPASy Swiss-Prot
Match: NUON_PELUB (NADH-quinone oxidoreductase subunit N OS=Pelagibacter ubique GN=nuoN PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 3.254e-16
Identity = 50/132 (37.88%), Postives = 77/132 (58.33%), Query Frame = 3
Query:    3 IGHACYIPTGFPCGTIEGIPSLLIGIFIYALMTIDAFAIVLALRQTRVKY--IAGLGPLAKTNPISAITFSLTMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLASVGVVTSVIGCWAAGRLPRVSQFGGPK 392
            IGH  Y   G   G+ EGI S ++ + IY +M +  F+ +L L++    Y  I  L  L+K +PI +++    +FS AGIPPLAGF +KFY+F A +    YFLA VG++++VI  +   ++ +V  F   K
Sbjct:  298 IGHMGYALAGLSTGSNEGIQSSIVYMSIYLVMNLAFFSCLLMLKRNDAYYETIDDLSGLSKNHPILSLSLLAILFSLAGIPPLAGFFAKFYIFKAVIEQSMYFLAIVGLLSTVIAAFYYLKIIKVIYFDKEK 429          
BLAST of DY260235 vs. ExPASy Swiss-Prot
Match: NUON_GRABC (NADH-quinone oxidoreductase subunit N OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=nuoN PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 4.250e-16
Identity = 50/131 (38.17%), Postives = 75/131 (57.25%), Query Frame = 3
Query:    3 IGHACYIPTGFPCGTIEGIPSLLIGIFIYALMTIDAFAIVLALRQT--RVKYIAGLGPLAKTNPISAITFSLTMFSYAGIPPLAGFCSKFYLFFAALGCG---AYFLASVGVVTSVIGCWAAGRLPRVSQF 380
            IGH  Y   G   G+  GI  LLI +  Y  M    FA +LA+R+   +++ ++ L    +T+P  A+  ++ MFS AGIPP++GF  K Y+F AA+  G    + LA +GV+TSVIG +   R+ +V  F
Sbjct:  299 IGHMGYALVGLAAGSQAGIRGLLIYLVTYVFMNTGTFACILAMRRRGRQLEKVSDLAGAGRTDPALALLLAIFMFSMAGIPPMSGFFGKLYVFLAAVQAGEPLLWGLAVIGVLTSVIGAYYYLRVVKVMYF 429          
BLAST of DY260235 vs. ExPASy Swiss-Prot
Match: NUON_PARDP (NADH-quinone oxidoreductase subunit N OS=Paracoccus denitrificans (strain Pd 1222) GN=nuoN PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 7.250e-16
Identity = 48/130 (36.92%), Postives = 73/130 (56.15%), Query Frame = 3
Query:    3 IGHACYIPTGFPCGTIEGIPSLLIGIFIYALMTIDAFAIVLALRQTRVKY--IAGLGPLAKTNPISAITFSLTMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLASVGVVTSVIGCWAAGRLPRVSQFGG 386
            I H  +   G   GT  G+ ++L+ + IYA+M I  FA +L++ +  V    +A L   A T+P+ A+   + MFS AG+PP  GF +KF +  AA+  G  +LA +GV+ SVIG +   R+     FGG
Sbjct:  303 IAHMGFALVGLAAGTAIGVQNMLLYMTIYAVMNIGTFAFILSMERDGVPVTDLAALNRFAWTDPVKALAMLVLMFSLAGVPPTLGFFAKFGVLTAAVDAGMGWLAVLGVIASVIGAFYYLRIVYYMYFGG 432          
BLAST of DY260235 vs. ExPASy Swiss-Prot
Match: NQO14_PARDE (NADH-quinone oxidoreductase subunit 14 OS=Paracoccus denitrificans GN=nqo14 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 7.250e-16
Identity = 48/130 (36.92%), Postives = 73/130 (56.15%), Query Frame = 3
Query:    3 IGHACYIPTGFPCGTIEGIPSLLIGIFIYALMTIDAFAIVLALRQTRVKY--IAGLGPLAKTNPISAITFSLTMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLASVGVVTSVIGCWAAGRLPRVSQFGG 386
            I H  +   G   GT  G+ ++L+ + IYA+M I  FA +L++ +  V    +A L   A T+P+ A+   + MFS AG+PP  GF +KF +  AA+  G  +LA +GV+ SVIG +   R+     FGG
Sbjct:  303 IAHMGFALVGLAAGTAIGVQNMLLYMTIYAVMNIGTFAFILSMERDGVPVTDLAALNRFAWTDPVKALAMLVLMFSLAGVPPTLGFFAKFGVLTAAVDAGMGWLAVLGVIASVIGAFYYLRIVYYMYFGG 432          
The following BLAST results are available for this feature:
BLAST of DY260235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
NUON_RHIEC1.561e-1837.98NADH-quinone oxidoreductase subunit N OS=Rhizobium... [more]
NUON_PARL12.038e-1838.28NADH-quinone oxidoreductase subunit N OS=Parvibacu... [more]
NUON_BARBK2.038e-1842.42NADH-quinone oxidoreductase subunit N OS=Bartonell... [more]
NUON_RHOCS2.662e-1836.96NADH-quinone oxidoreductase subunit N OS=Rhodospir... [more]
NUON_BEII91.726e-1738.41NADH-quinone oxidoreductase subunit N OS=Beijerinc... [more]
NUON1_ACICJ5.021e-1739.84NADH-quinone oxidoreductase subunit N 1 OS=Acidiph... [more]
NUON_PELUB3.254e-1637.88NADH-quinone oxidoreductase subunit N OS=Pelagibac... [more]
NUON_GRABC4.250e-1638.17NADH-quinone oxidoreductase subunit N OS=Granuliba... [more]
NUON_PARDP7.250e-1636.92NADH-quinone oxidoreductase subunit N OS=Paracoccu... [more]
NQO14_PARDE7.250e-1636.92NADH-quinone oxidoreductase subunit 14 OS=Paracocc... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP11YM21FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260235 ID=DY260235; Name=DY260235; organism=Citrus clementina; type=EST; length=1038bp
CAATTGGACATGCTTGTTATATTCCTACTGGTTTCCCATGTGGAACCATA
GAAGGAATTCCATCCCTACTAATTGGTATCTTTATTTATGCCTTAATGAC
GATAGATGCATTCGCCATAGTTTTAGCATTACGGCAAACCCGTGTCAAAT
ATATAGCGGGTTTGGGCCCCCTAGCCAAAACGAATCCTATTTCGGCTATT
ACCTTCTCCCTTACTATGTTCTCATACGCGGGAATACCCCCGTTAGCCGG
CTTTTGTAGCAAATTCTATTTGTTCTTCGCCGCTTTGGGTTGTGGGGCTT
ACTTCCTAGCCTCAGTGGGAGTAGTGACTAGCGTTATAGGTTGTTGGGCG
GCCGGAAGGTTGCCACGAGTAAGTCAGTTTGGGGGACCGAAGGCAGTTCT
CCGTGCACCGGACACGTAGTTTACCCAATCAGTTGCGACACGGATGGGAA
TGCATGCTACGAAAGATAGGGTAGAGTCTGATACATCAACCGTCTACTCA
ATATCCTTGTACGAGTCCACAATCACTACACGAGATGAACCTTGGTTTGG
TGAATTGAAGTTGGCCTTAGGTGTAATAGGACTCCCAGTTACTGCGCGCG
ATCGTATACTGAGGTGCTCCCCGCCCATTGTTGAAACCACCCAAGCCGGG
CCCGGGCCGGGCCTCGATTCAGAAAGATGAAGGGCCCCCAAGTCTAAATA
GGGGGTTACAAACCCCCCATCCCATTGGGGGCCGAAAACCAATCCACCTC
TCGATGTGAGACAGCCTTTTCCATTTTATTTGGGAAAGAACGGCCAAGTC
CCTCCCAACCCCCCAATGAAAAATAAAAGGAAAACCCAAGCCCCCAAGGG
CCCCCCAACCCCCAGCCGAAACCGGCCCCGAAAAAAAATAATGGTGGAGG
AAAAACCCCCCCACCCCCTTCCCCTCCCCTCCCGGGGCCCAACCCTGCCC
TCCTTTCCCCGGCCCAATCCAAGGATTGGGGCCCTCCTCCCCCCCCCCAC
CCCACACTACCCATTCCAAAAAAATCCCTTTTTGGAAT
back to top