DY260277

Overview
NameDY260277
Unique NameDY260277
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length852
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260277 vs. ExPASy Swiss-Prot
Match: IF1A_DICDI (Eukaryotic translation initiation factor 1A OS=Dictyostelium discoideum GN=eif1a PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 7.516e-34
Identity = 69/95 (72.63%), Postives = 78/95 (82.11%), Query Frame = 1
Query:  121 EKRELVFKEDGQEYAPVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLN 405
            +KREL FKE+GQEYA VLRMLGNGR EA C DG KRLCHI G++ KK WI  GDIIL+ LRDYQ+DKADVIL+Y  DEAR LK YGELPE+ R+N
Sbjct:   21 QKRELQFKEEGQEYAQVLRMLGNGRLEASCFDGEKRLCHISGRLRKKEWINNGDIILIQLRDYQNDKADVILRYNVDEARNLKTYGELPETARIN 115          
BLAST of DY260277 vs. ExPASy Swiss-Prot
Match: IF1A_YEAST (Eukaryotic translation initiation factor 1A OS=Saccharomyces cerevisiae GN=TIF11 PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.955e-31
Identity = 61/94 (64.89%), Postives = 75/94 (79.79%), Query Frame = 1
Query:  124 KRELVFKEDGQEYAPVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLN 405
            KREL++KE+GQEYA + +MLGNGR EA C DG KR+ HIRGK+ KKVW+  GDIILV LRD+QDD+ DV+ KY  DEAR LK  GELPE+ ++N
Sbjct:   23 KRELIYKEEGQEYAQITKMLGNGRVEASCFDGNKRMAHIRGKLRKKVWMGQGDIILVSLRDFQDDQCDVVHKYNLDEARTLKNQGELPENAKIN 116          
BLAST of DY260277 vs. ExPASy Swiss-Prot
Match: IF1A_SCHPO (Eukaryotic translation initiation factor 1A OS=Schizosaccharomyces pombe GN=tif11 PE=2 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 2.263e-30
Identity = 63/96 (65.62%), Postives = 75/96 (78.12%), Query Frame = 1
Query:  118 HEKRELVFKEDGQEYAPVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLN 405
            +EKREL + E+GQ YA V +MLGNGR EA C DG KRL HIRGK+ KKVWI  GDIIL+ LR++QD+K DVILKY  DEAR LK  GELPE+ ++N
Sbjct:   21 NEKRELTYAEEGQMYAQVTKMLGNGRIEAACFDGVKRLGHIRGKLRKKVWINQGDIILLSLREFQDEKGDVILKYTADEARTLKNQGELPETAKIN 116          
BLAST of DY260277 vs. ExPASy Swiss-Prot
Match: IF1A_NATPD (Translation initiation factor 1A OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=eif1a PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.552e-13
Identity = 35/90 (38.89%), Postives = 54/90 (60.00%), Query Frame = 1
Query:  124 KRELVFKEDGQEYAPVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPES 393
            ++ L   E  + +A V  MLG  R +  C+DGT+R   I G+M K++WI   D++LV   D+QD+KADV+ +Y   EA  L+  G + +S
Sbjct:    7 RKNLRMPEGDEVFAVVTNMLGANRVKVRCMDGTERTARIPGRMQKRIWIREDDVVLVEPWDWQDEKADVVWRYEKQEADQLREEGHITDS 96          
BLAST of DY260277 vs. ExPASy Swiss-Prot
Match: IF1A_SULIY (Translation initiation factor 1A OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=eIF1A PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.779e-12
Identity = 32/80 (40.00%), Postives = 51/80 (63.75%), Query Frame = 1
Query:  127 RELVFKEDGQEYAPVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLL 366
            R++   E+GQ    V +MLG      +C+DG +RL  I GK+ KK+W+  GD++LVG+ D+Q ++ D++ KY  DE + L
Sbjct:   13 RDVPKPEEGQTICVVKKMLGGDHLVVLCMDGKERLARIPGKIRKKMWMREGDVVLVGIWDFQPNRCDILYKYGNDEIKRL 92          
BLAST of DY260277 vs. ExPASy Swiss-Prot
Match: IF1A_SULIN (Translation initiation factor 1A OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=eIF1A PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.779e-12
Identity = 32/80 (40.00%), Postives = 51/80 (63.75%), Query Frame = 1
Query:  127 RELVFKEDGQEYAPVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLL 366
            R++   E+GQ    V +MLG      +C+DG +RL  I GK+ KK+W+  GD++LVG+ D+Q ++ D++ KY  DE + L
Sbjct:   13 RDVPKPEEGQTICVVKKMLGGDHLVVLCMDGKERLARIPGKIRKKMWMREGDVVLVGIWDFQPNRCDILYKYGNDEIKRL 92          
BLAST of DY260277 vs. ExPASy Swiss-Prot
Match: IF1A_SULIM (Translation initiation factor 1A OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=eIF1A PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.779e-12
Identity = 32/80 (40.00%), Postives = 51/80 (63.75%), Query Frame = 1
Query:  127 RELVFKEDGQEYAPVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLL 366
            R++   E+GQ    V +MLG      +C+DG +RL  I GK+ KK+W+  GD++LVG+ D+Q ++ D++ KY  DE + L
Sbjct:   13 RDVPKPEEGQTICVVKKMLGGDHLVVLCMDGKERLARIPGKIRKKMWMREGDVVLVGIWDFQPNRCDILYKYGNDEIKRL 92          
BLAST of DY260277 vs. ExPASy Swiss-Prot
Match: IF1A_SULIL (Translation initiation factor 1A OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=eIF1A PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.779e-12
Identity = 32/80 (40.00%), Postives = 51/80 (63.75%), Query Frame = 1
Query:  127 RELVFKEDGQEYAPVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLL 366
            R++   E+GQ    V +MLG      +C+DG +RL  I GK+ KK+W+  GD++LVG+ D+Q ++ D++ KY  DE + L
Sbjct:   13 RDVPKPEEGQTICVVKKMLGGDHLVVLCMDGKERLARIPGKIRKKMWMREGDVVLVGIWDFQPNRCDILYKYGNDEIKRL 92          
BLAST of DY260277 vs. ExPASy Swiss-Prot
Match: IF1A_SULIK (Translation initiation factor 1A OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=eIF1A PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.779e-12
Identity = 32/80 (40.00%), Postives = 51/80 (63.75%), Query Frame = 1
Query:  127 RELVFKEDGQEYAPVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLL 366
            R++   E+GQ    V +MLG      +C+DG +RL  I GK+ KK+W+  GD++LVG+ D+Q ++ D++ KY  DE + L
Sbjct:   13 RDVPKPEEGQTICVVKKMLGGDHLVVLCMDGKERLARIPGKIRKKMWMREGDVVLVGIWDFQPNRCDILYKYGNDEIKRL 92          
BLAST of DY260277 vs. ExPASy Swiss-Prot
Match: IF1A_SULIA (Translation initiation factor 1A OS=Sulfolobus islandicus (strain M.16.27) GN=eIF1A PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.779e-12
Identity = 32/80 (40.00%), Postives = 51/80 (63.75%), Query Frame = 1
Query:  127 RELVFKEDGQEYAPVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLL 366
            R++   E+GQ    V +MLG      +C+DG +RL  I GK+ KK+W+  GD++LVG+ D+Q ++ D++ KY  DE + L
Sbjct:   13 RDVPKPEEGQTICVVKKMLGGDHLVVLCMDGKERLARIPGKIRKKMWMREGDVVLVGIWDFQPNRCDILYKYGNDEIKRL 92          
The following BLAST results are available for this feature:
BLAST of DY260277 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
IF1A_DICDI7.516e-3472.63Eukaryotic translation initiation factor 1A OS=Dic... [more]
IF1A_YEAST5.955e-3164.89Eukaryotic translation initiation factor 1A OS=Sac... [more]
IF1A_SCHPO2.263e-3065.63Eukaryotic translation initiation factor 1A OS=Sch... [more]
IF1A_NATPD9.552e-1338.89Translation initiation factor 1A OS=Natronomonas p... [more]
IF1A_SULIY2.779e-1240.00Translation initiation factor 1A OS=Sulfolobus isl... [more]
IF1A_SULIN2.779e-1240.00Translation initiation factor 1A OS=Sulfolobus isl... [more]
IF1A_SULIM2.779e-1240.00Translation initiation factor 1A OS=Sulfolobus isl... [more]
IF1A_SULIL2.779e-1240.00Translation initiation factor 1A OS=Sulfolobus isl... [more]
IF1A_SULIK2.779e-1240.00Translation initiation factor 1A OS=Sulfolobus isl... [more]
IF1A_SULIA2.779e-1240.00Translation initiation factor 1A OS=Sulfolobus isl... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YA01FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260277 ID=DY260277; Name=DY260277; organism=Citrus clementina; type=EST; length=852bp
TGATTTCCATCCTGCTGCCTTTTAACTCCCCCACTCCCCCTCCCCCCCCA
AGAAACCCTGCCCAAGAATAAGGGAAAGGGAGGAAAGAACAGGAAGAGGG
GAAAGAATGAAGCCTGACACGAGAAGCGTGAGCTTGTCTTCAAGGAAGAC
GGACAGGAATATGCCCCAGTCCTTCGTATGCTCGGCAATGGTCGGTGTGA
AGCTATGTGCATCGATGGAACCAAGCGTCTTTGCCACATCCGTGGGAAGA
TGCACAAAAAGGTTTGGATTGCAGCTGGTGATATAATACTTGTTGGCCTA
CGTGATTATCAGGATGACAAGGCTGATGTCATCCTCAAGTATATGCCCGA
CGAGGCAAGGCTTCTGAAGGCTTATGGTGAACTTCCAGAGAGTACCCGTC
TCAATGAGGGCATTGCTGGTGGTCTTGATGAAGAGGATGATGGCGCTGAT
AATGATTACATCGAGTTTGAAGACGAAGATATTGATAAGATCTAGGCTCC
GAGAATCGACTCTGTCTGGGGTTTATGTTCAATATTTAGCAAAAATGGAG
TATGCCAATGTATTGGTTACTTAAAAGCTGAAAATATGTGTTTGCAGCTT
ATATATTTGGAATTTTTAATGGTGAGCCTGTCATATTTTGTGTAACGCCT
ATTACTTGCTTATTAATTTTGTTTAGTTCCGCCCCTTTTTTGAAGTGGTA
TTTCCAGAATGGAATCCTATACCGGTATGGTGCCAATCCTTTATGTCCAT
AATAATTTGTTGTGCCAATTAGAAGACGGGTAAATGGCCCGAATCTTTTT
TTCTAATTTGGGGTAAAAAAAAAAAAAAAAAAAACCCCAACTTTTTGGAC
CA
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