DY260277

Overview
NameDY260277
Unique NameDY260277
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length852
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260277 vs. ExPASy Swiss-Prot
Match: IF1A_SULSO (Translation initiation factor 1A OS=Sulfolobus solfataricus GN=eIF1A PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.630e-12
Identity = 32/80 (40.00%), Postives = 51/80 (63.75%), Query Frame = 1
Query:  127 RELVFKEDGQEYAPVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLL 366
            R++   E+GQ    V +MLG      +C+DG +RL  I GK+ KK+W+  GD++LVG+ D+Q ++ D++ KY  DE + L
Sbjct:   13 RDVPRPEEGQTICVVKKMLGGDHLIVLCMDGKERLARIPGKIRKKMWMREGDVVLVGIWDFQPNRCDILYKYGNDEIKRL 92          
BLAST of DY260277 vs. ExPASy Swiss-Prot
Match: IF1A_HALMA (Translation initiation factor 1A OS=Haloarcula marismortui GN=eif1a PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 6.191e-12
Identity = 33/89 (37.08%), Postives = 53/89 (59.55%), Query Frame = 1
Query:  124 KRELVFKEDGQEYAPVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPE 390
            ++ L   E+ + +A V+ MLG  R +  C+DG +R   I GKM K++WI   D++LV   D+QD+KAD+  +Y   +A  L+  G + E
Sbjct:    7 RKNLRMPEEDEVFAVVMDMLGANRVKVRCMDGVERTARIPGKMQKRIWIREDDVVLVEPWDWQDEKADITWRYEKQDADQLREEGHIQE 95          
BLAST of DY260277 vs. ExPASy Swiss-Prot
Match: IF1A_HALS3 (Translation initiation factor 1A OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=eIF1A PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.086e-12
Identity = 35/87 (40.23%), Postives = 50/87 (57.47%), Query Frame = 1
Query:  124 KRELVFKEDGQEYAPVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGEL 384
            ++ L   ED + +A V  MLG  R +  C DG +R   I G+M K++WI   DI+LV   D+QDDKADV  +Y   +A  L+  G +
Sbjct:    8 RKNLRMPEDDEVFAEVTDMLGANRVQVRCADGEERTARIPGRMQKRIWIREDDIVLVEPWDWQDDKADVTWRYEKSDADQLREEGHI 94          
BLAST of DY260277 vs. ExPASy Swiss-Prot
Match: IF1A1_HALSA (Translation initiation factor 1A 1 OS=Halobacterium salinarium GN=eIF1A1 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.086e-12
Identity = 35/87 (40.23%), Postives = 50/87 (57.47%), Query Frame = 1
Query:  124 KRELVFKEDGQEYAPVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGEL 384
            ++ L   ED + +A V  MLG  R +  C DG +R   I G+M K++WI   DI+LV   D+QDDKADV  +Y   +A  L+  G +
Sbjct:    8 RKNLRMPEDDEVFAEVTDMLGANRVQVRCADGEERTARIPGRMQKRIWIREDDIVLVEPWDWQDDKADVTWRYEKSDADQLREEGHI 94          
BLAST of DY260277 vs. ExPASy Swiss-Prot
Match: IF1A_METKA (Translation initiation factor 1A OS=Methanopyrus kandleri GN=eIF1A PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.056e-11
Identity = 33/88 (37.50%), Postives = 54/88 (61.36%), Query Frame = 1
Query:  127 RELVFKEDGQEYAPVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPE 390
            +++   ++G+ +  V +MLGN R +  C+DG  R+  I GKM K+VWI  GD++LV   ++Q ++ADV  +Y   +   LK  G+L E
Sbjct:   11 KKIRLPKEGEIFGVVEKMLGNDRVQVRCVDGKTRVARIPGKMRKRVWIREGDVVLVKPWEFQPERADVTWRYTRVQVDWLKRKGKLDE 98          
BLAST of DY260277 vs. ExPASy Swiss-Prot
Match: IF1A_PICTO (Translation initiation factor 1A OS=Picrophilus torridus GN=eif1a PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.801e-11
Identity = 34/83 (40.96%), Postives = 48/83 (57.83%), Query Frame = 1
Query:  142 KEDGQEYAPVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPE 390
            K+ G+ Y  V +M G  R   MC DG  R C I GKM K++WI  GD+++V   ++QD+K D+I +Y   +A  L     LPE
Sbjct:   17 KKSGEIYGIVEKMSGASRLIVMCEDGVTRNCRIPGKMKKRMWIREGDLVIVKPWEFQDEKGDIIYRYTKTQAAYLSRNHMLPE 99          
BLAST of DY260277 vs. ExPASy Swiss-Prot
Match: IF1A_DESK1 (Translation initiation factor 1A OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=eIF1A PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.940e-11
Identity = 34/82 (41.46%), Postives = 47/82 (57.32%), Query Frame = 1
Query:  145 EDGQEYAPVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPE 390
            ++G     V+R LG     A C+DG  R   I GK+ +KVWI  GDIILVGL D+  +K +V+ KY  +E   L   G +P+
Sbjct:   25 DEGTIICGVVRHLGGDYLIAKCLDGVDRKIRIPGKLRRKVWITEGDIILVGLWDFSSEKGEVVYKYGKNEVNKLVEKGVVPK 106          
The following BLAST results are available for this feature:
BLAST of DY260277 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
IF1A_SULSO3.630e-1240.00Translation initiation factor 1A OS=Sulfolobus sol... [more]
IF1A_HALMA6.191e-1237.08Translation initiation factor 1A OS=Haloarcula mar... [more]
IF1A_HALS38.086e-1240.23Translation initiation factor 1A OS=Halobacterium ... [more]
IF1A1_HALSA8.086e-1240.23Translation initiation factor 1A 1 OS=Halobacteriu... [more]
IF1A_METKA1.056e-1137.50Translation initiation factor 1A OS=Methanopyrus k... [more]
IF1A_PICTO1.801e-1140.96Translation initiation factor 1A OS=Picrophilus to... [more]
IF1A_DESK18.940e-1141.46Translation initiation factor 1A OS=Desulfurococcu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YA01FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260277 ID=DY260277; Name=DY260277; organism=Citrus clementina; type=EST; length=852bp
TGATTTCCATCCTGCTGCCTTTTAACTCCCCCACTCCCCCTCCCCCCCCA
AGAAACCCTGCCCAAGAATAAGGGAAAGGGAGGAAAGAACAGGAAGAGGG
GAAAGAATGAAGCCTGACACGAGAAGCGTGAGCTTGTCTTCAAGGAAGAC
GGACAGGAATATGCCCCAGTCCTTCGTATGCTCGGCAATGGTCGGTGTGA
AGCTATGTGCATCGATGGAACCAAGCGTCTTTGCCACATCCGTGGGAAGA
TGCACAAAAAGGTTTGGATTGCAGCTGGTGATATAATACTTGTTGGCCTA
CGTGATTATCAGGATGACAAGGCTGATGTCATCCTCAAGTATATGCCCGA
CGAGGCAAGGCTTCTGAAGGCTTATGGTGAACTTCCAGAGAGTACCCGTC
TCAATGAGGGCATTGCTGGTGGTCTTGATGAAGAGGATGATGGCGCTGAT
AATGATTACATCGAGTTTGAAGACGAAGATATTGATAAGATCTAGGCTCC
GAGAATCGACTCTGTCTGGGGTTTATGTTCAATATTTAGCAAAAATGGAG
TATGCCAATGTATTGGTTACTTAAAAGCTGAAAATATGTGTTTGCAGCTT
ATATATTTGGAATTTTTAATGGTGAGCCTGTCATATTTTGTGTAACGCCT
ATTACTTGCTTATTAATTTTGTTTAGTTCCGCCCCTTTTTTGAAGTGGTA
TTTCCAGAATGGAATCCTATACCGGTATGGTGCCAATCCTTTATGTCCAT
AATAATTTGTTGTGCCAATTAGAAGACGGGTAAATGGCCCGAATCTTTTT
TTCTAATTTGGGGTAAAAAAAAAAAAAAAAAAAACCCCAACTTTTTGGAC
CA
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