DY260430

Overview
NameDY260430
Unique NameDY260430
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1117
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260430 vs. ExPASy Swiss-Prot
Match: SAR1_CRYNE (Small COPII coat GTPase SAR1 OS=Cryptococcus neoformans GN=SAR1 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 8.596e-18
Identity = 46/120 (38.33%), Postives = 69/120 (57.50%), Query Frame = 1
Query:   88 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAALPVLPNKQDRTNATN 447
            K  ++L +GLD AGKTT+L+ LK   + T  PT+    E +   N+ FT +D+GG  + R LWR YF    G++F+VDS D +R  E++ EL  +L+ + L      +L NK D   A +
Sbjct:   19 KSAKLLFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELAIGNVKFTTYDLGGHIQARRLWRDYFPEVDGIVFLVDSADAERFAESKAELDSLLSIESLAQVPFLILGNKIDAYGAVS 138          
BLAST of DY260430 vs. ExPASy Swiss-Prot
Match: SAR1_TRIRE (Small COPII coat GTPase sar1 OS=Trichoderma reesei GN=sar1 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.123e-17
Identity = 44/120 (36.67%), Postives = 70/120 (58.33%), Query Frame = 1
Query:   88 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAALPVLPNKQDRTNATN 447
            K  ++L +GLD AGKTT+L+ LK   +    PT+    E +   N+ F  +D+GG  + R +WR YF +  G++F+VD+ D +R  EA+ EL  +L+ +EL      +L NK D  +A +
Sbjct:   19 KHAKLLFLGLDNAGKTTLLHMLKNDRVAILQPTLHPTSEELAIGNVRFNTFDLGGHQQARRIWRDYFPDVNGVVFLVDAKDHERFPEAKAELDALLSMEELSKVPFVILGNKIDHPDAVS 138          
BLAST of DY260430 vs. ExPASy Swiss-Prot
Match: SAR1_PICGU (Small COPII coat GTPase SAR1 OS=Pichia guilliermondii GN=SAR1 PE=3 SV=3)

HSP 1 Score: 90.8929 bits (224), Expect = 1.466e-17
Identity = 43/118 (36.44%), Postives = 70/118 (59.32%), Query Frame = 1
Query:   88 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAALPVLPNKQDRTNA 441
            K  ++L +GLD AGKTT+L+ LK   + T  PT+    E +   ++ FT +D+GG  + R LW+ YF    G++F+VD+ D +R+ E++ EL  +   +EL      +L NK D++ A
Sbjct:   19 KHAKLLFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELAIGSVRFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAADTERLAESKAELESLFRIEELSQVPFLILGNKIDKSTA 136          
BLAST of DY260430 vs. ExPASy Swiss-Prot
Match: ARL3_YEAST (ADP-ribosylation factor-like protein 3 OS=Saccharomyces cerevisiae GN=ARL3 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.466e-17
Identity = 51/131 (38.93%), Postives = 76/131 (58.02%), Query Frame = 1
Query:   64 LFSRLFAKKEMRILMVGLDAAGKTTIL------YKLKLGEIVTTIPTIGFNVET--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAALPVLPNKQDR 432
            L++    K++  IL++GLD AGKTT L      Y L    +    PT+G NV T  V+ K I    WDVGGQ+ +R +W  Y+    G+IF+VDS+DR+R+ E    L  ++ ++E+    + +L NKQDR
Sbjct:    8 LYNNWNKKEQYSILILGLDNAGKTTFLETLKKEYSLAFKALEKIQPTVGQNVATIPVDSKQI-LKFWDVGGQESLRSMWSEYYSLCHGIIFIVDSSDRERLDECSTTLQSVVMDEEIEGVPILMLANKQDR 137          
BLAST of DY260430 vs. ExPASy Swiss-Prot
Match: SAR1A_PIG (GTP-binding protein SAR1a OS=Sus scrofa GN=SAR1A PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.915e-17
Identity = 45/137 (32.85%), Postives = 83/137 (60.58%), Query Frame = 1
Query:   46 GLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAALPVLPNKQDRTNATNRPK 456
            G S    F  L+ KK  +++ +GLD AGKTT+L+ LK   +   +PT+    E +    ++FT +D+GG ++ R +W++Y     G++F+VD  D  R++E++ EL+ ++ ++ + +  + +L NK DRT+A +  K
Sbjct:   11 GFSSVLQFLGLY-KKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHPRLMESKVELNALMTDETISNVPILILGNKIDRTDAISEEK 146          
BLAST of DY260430 vs. ExPASy Swiss-Prot
Match: SAR1A_BOVIN (GTP-binding protein SAR1a OS=Bos taurus GN=SAR1A PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.915e-17
Identity = 45/137 (32.85%), Postives = 83/137 (60.58%), Query Frame = 1
Query:   46 GLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAALPVLPNKQDRTNATNRPK 456
            G S    F  L+ KK  +++ +GLD AGKTT+L+ LK   +   +PT+    E +    ++FT +D+GG ++ R +W++Y     G++F+VD  D  R++E++ EL+ ++ ++ + +  + +L NK DRT+A +  K
Sbjct:   11 GFSSVLQFLGLY-KKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHPRLMESKVELNALMTDETISNVPILILGNKIDRTDAISEEK 146          
BLAST of DY260430 vs. ExPASy Swiss-Prot
Match: ARFRP_RAT (ADP-ribosylation factor-related protein 1 OS=Rattus norvegicus GN=Arfrp1 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.501e-17
Identity = 48/133 (36.09%), Postives = 77/133 (57.89%), Query Frame = 1
Query:   64 LFSRLFAKKEMRILMVGLDAAGKTTIL----------YK-LKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAALPVLPNKQD 429
            L+  +F K E  IL++GLD AGKTT L          YK + L +I TT+   G N+ TV+        WD+GGQ++++ LW  Y+    G+I+V+DS D +R+ E+++   ++++ + L    + VL NKQD
Sbjct:    8 LYKYMFQKDEYCILILGLDNAGKTTFLEQSKTRFNKNYKGMSLSKITTTV---GLNIGTVDVGKARLMFWDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLSESKEAFEKVVSSEALDGVPILVLANKQD 137          
BLAST of DY260430 vs. ExPASy Swiss-Prot
Match: ARFRP_MOUSE (ADP-ribosylation factor-related protein 1 OS=Mus musculus GN=Arfrp1 PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 2.501e-17
Identity = 48/133 (36.09%), Postives = 77/133 (57.89%), Query Frame = 1
Query:   64 LFSRLFAKKEMRILMVGLDAAGKTTIL----------YK-LKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAALPVLPNKQD 429
            L+  +F K E  IL++GLD AGKTT L          YK + L +I TT+   G N+ TV+        WD+GGQ++++ LW  Y+    G+I+V+DS D +R+ E+++   ++++ + L    + VL NKQD
Sbjct:    8 LYKYMFQKDEYCILILGLDNAGKTTFLEQSKTRFNKNYKGMSLSKITTTV---GLNIGTVDVGKARLMFWDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLSESKEAFEKVVSSEALDGVPILVLANKQD 137          
BLAST of DY260430 vs. ExPASy Swiss-Prot
Match: ARFRP_BOVIN (ADP-ribosylation factor-related protein 1 OS=Bos taurus GN=ARFRP1 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.501e-17
Identity = 48/133 (36.09%), Postives = 75/133 (56.39%), Query Frame = 1
Query:   64 LFSRLFAKKEMRILMVGLDAAGKTTIL----------YK-LKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAALPVLPNKQD 429
            L+  +F K E  +L++GLD AGKTT L          YK + L +I TT+   G N+ TV+        WD+GGQ++++ LW  Y+    G+I+V+DS D +R+ E++    +M+  + L    + VL NKQD
Sbjct:    8 LYKYMFQKDEYCVLILGLDNAGKTTFLEQSKTRFNKNYKGMSLSKITTTV---GLNIGTVDVGKARLMFWDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLSESKQAFEKMVTSEALDGVPILVLANKQD 137          
BLAST of DY260430 vs. ExPASy Swiss-Prot
Match: SAR1A_MOUSE (GTP-binding protein SAR1a OS=Mus musculus GN=Sar1a PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 3.266e-17
Identity = 45/137 (32.85%), Postives = 82/137 (59.85%), Query Frame = 1
Query:   46 GLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAALPVLPNKQDRTNATNRPK 456
            G S    F  L+ KK  +++ +GLD AGKTT+L  LK   +   +PT+    E +    ++FT +D+GG ++ R +W++Y     G++F+VD  D  R++E++ EL+ ++ ++ + +  + +L NK DRT+A +  K
Sbjct:   11 GFSSVLQFLGLY-KKSGKLVFLGLDNAGKTTLLQMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLMESKVELNALMTDETISNVPILILGNKIDRTDAISEEK 146          
The following BLAST results are available for this feature:
BLAST of DY260430 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 217
Match NameE-valueIdentityDescription
SAR1_CRYNE8.596e-1838.33Small COPII coat GTPase SAR1 OS=Cryptococcus neofo... [more]
SAR1_TRIRE1.123e-1736.67Small COPII coat GTPase sar1 OS=Trichoderma reesei... [more]
SAR1_PICGU1.466e-1736.44Small COPII coat GTPase SAR1 OS=Pichia guilliermon... [more]
ARL3_YEAST1.466e-1738.93ADP-ribosylation factor-like protein 3 OS=Saccharo... [more]
SAR1A_PIG1.915e-1732.85GTP-binding protein SAR1a OS=Sus scrofa GN=SAR1A P... [more]
SAR1A_BOVIN1.915e-1732.85GTP-binding protein SAR1a OS=Bos taurus GN=SAR1A P... [more]
ARFRP_RAT2.501e-1736.09ADP-ribosylation factor-related protein 1 OS=Rattu... [more]
ARFRP_MOUSE2.501e-1736.09ADP-ribosylation factor-related protein 1 OS=Mus m... [more]
ARFRP_BOVIN2.501e-1736.09ADP-ribosylation factor-related protein 1 OS=Bos t... [more]
SAR1A_MOUSE3.266e-1732.85GTP-binding protein SAR1a OS=Mus musculus GN=Sar1a... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP12YH13FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260430 ID=DY260430; Name=DY260430; organism=Citrus clementina; type=EST; length=1117bp
CTTAAGCAGCCTCCTTTTTCAGATCTCGTGAGATAACAGAAAATGGGGCT
GTCATTTACGAAACTTTTTAGCCGGCTTTTTGCCAAGAAAGAGATGCGAA
TTCTGATGGTGGGTCTCGACGCTGCTGGTAAGACCACCATTTTGTACAAG
CTCAAGCTCGGTGAGATTGTGACAACCATTCCTACCATTGGTTTCAACGT
GGAGACTGTGGAATATAAGAACATTAGCTTCACTGTTTGGGATGTTGGGG
GTCAGGATAAGATTCGTCCTTTGTGGAGACATTACTTCCAAAACACTCAA
GGACTTATCTTTGTGGTTGATAGCAATGATCGTGACCGTGTGGTTGAAGC
TAGAGATGAACTGCACCGGATGCTGAATGAGGATGAGTTGAGGGATGCTG
CGCTGCCTGTTTTACCCAACAAGCAAGATCGTACAAATGCCACGAACCGC
CCAAAGAACCCTGACAAGCATCGACCTCCTCCNCNNCNCCNNNCCCCCNC
CTNCTTCCCCCTCCTTCCTCCCCCTCTNCCTCTCCCCAACCAAACGCCTG
TACCGCCCCCTCATCCCTCTTCACCACTCAATCAACCCATACACACCCCC
TCCCCCACCCCCTCCGCAACGACCCATGCATAACCCTACCCACGCCTTTT
CTCACCCCATCGAATTCACCCCCCCTCTCCCCTCTCCCCCTTCCACACCC
ACCCGCGCTACCCCGACACACCTACCCTACCCCCCACCCCACCCCCTCCG
ACCCCACCTTCCCTCCCCACTCCTCCTCCCCCACCTCCTCATCGTAACCA
ATCTCTACAATATAACTCCTAACCACCTCCAACACAGCCCCTCCACAGCA
ATGTCACCACCCCCGCCACCCTCTAACCTCTTCACCCTATCCTCTCCTCC
ACCCTGAACACCTCCCCCAATCCCTCCTCATATCACAACACAAAATCCAC
ACACACCACACCACAAACGAATCCGACCCGTACCTCCACCTCAATCATCT
CGCACGCCCACTTATCACACCGCTCACCCCCAACCCCACATTCGCTTCAC
TCAAACATGACTCTATATCAGGCATCTAACCCCTCTATGCTGCCTATCCA
CGCCTCATCATACCTGA
back to top