DY260433

Overview
NameDY260433
Unique NameDY260433
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1283
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260433 vs. ExPASy Swiss-Prot
Match: UCRI_NOSP7 (Cytochrome b6-f complex iron-sulfur subunit OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=petC PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.404e-14
Identity = 39/76 (51.32%), Postives = 46/76 (60.53%), Query Frame = 3
Query:  180 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLK 407
            VPDMG+RQ MNLL  G V+      L P   +F PP  G AGGGTTAKD +GND+    +L     GDR L +GLK
Sbjct:   10 VPDMGRRQFMNLLTFGTVTGVALGALYPVVNYFIPPATGGAGGGTTAKDELGNDVSVTKFLENRNAGDRNLVQGLK 85          
BLAST of DY260433 vs. ExPASy Swiss-Prot
Match: UCRI_PROMM (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9313) GN=petC PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 1.833e-14
Identity = 38/83 (45.78%), Postives = 51/83 (61.45%), Query Frame = 3
Query:  159 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLK 407
            T + +  VP MG+RQ MNLL  G+V+      L P   +F PP    +GGGT+AKD +GN + A+ WL  H  GDR+L +GLK
Sbjct:    2 TQMTSSDVPGMGRRQFMNLLTFGSVTGVALGSLYPVVKYFIPPRASGSGGGTSAKDELGNSVTASGWLANHSDGDRSLVQGLK 84          
BLAST of DY260433 vs. ExPASy Swiss-Prot
Match: UCRI_PROM3 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9303) GN=petC PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.833e-14
Identity = 38/83 (45.78%), Postives = 51/83 (61.45%), Query Frame = 3
Query:  159 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLK 407
            T + +  VP MG+RQ MNLL  G+V+      L P   +F PP    +GGGT+AKD +GN + A+ WL  H  GDR+L +GLK
Sbjct:    2 TQMTSSDVPGMGRRQFMNLLTFGSVTGVALGSLYPVVKYFIPPRASGSGGGTSAKDELGNSVTASGWLANHSDGDRSLVQGLK 84          
BLAST of DY260433 vs. ExPASy Swiss-Prot
Match: UCRI_NOSSP (Cytochrome b6-f complex iron-sulfur subunit OS=Nostoc sp. (strain PCC 7906) GN=petC PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.394e-14
Identity = 39/76 (51.32%), Postives = 47/76 (61.84%), Query Frame = 3
Query:  180 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLK 407
            VPDMG+RQ MNLL  G V+      L P   +F PP  G AGGGTTAKD +GND+  + +L     GDR L +GLK
Sbjct:   10 VPDMGRRQFMNLLTFGTVTGVALGALYPVVKYFIPPASGGAGGGTTAKDELGNDVSLSKFLENRNAGDRALVQGLK 85          
BLAST of DY260433 vs. ExPASy Swiss-Prot
Match: UCRI_CYAP4 (Cytochrome b6-f complex iron-sulfur subunit OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=petC PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.394e-14
Identity = 39/76 (51.32%), Postives = 47/76 (61.84%), Query Frame = 3
Query:  180 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLK 407
            VPDMG+RQ MNLL  G+ +     ML P   +F PP  G  GGG  AKDA+GNDI  +D+L  H   DR L +GLK
Sbjct:   10 VPDMGRRQFMNLLTFGSATGVALGMLYPVVRYFIPPASGGVGGGVVAKDALGNDISVSDFLAKHPANDRALAQGLK 85          
BLAST of DY260433 vs. ExPASy Swiss-Prot
Match: UCRI_MASLA (Cytochrome b6-f complex iron-sulfur subunit OS=Mastigocladus laminosus GN=petC PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 3.127e-14
Identity = 38/76 (50.00%), Postives = 49/76 (64.47%), Query Frame = 3
Query:  180 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLK 407
            VPDMG+RQ MNLL  G V+      L P   +F PP  G+ GGGTTAKD +GN++  + +L +H  GDR L +GLK
Sbjct:   10 VPDMGRRQFMNLLAFGTVTGVALGALYPLVKYFIPPSGGAVGGGTTAKDKLGNNVKVSKFLESHNAGDRVLVQGLK 85          
BLAST of DY260433 vs. ExPASy Swiss-Prot
Match: UCRIB_SYNY3 (Cytochrome b6-f complex iron-sulfur subunit 2 OS=Synechocystis sp. (strain PCC 6803) GN=petC2 PE=3 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 3.127e-14
Identity = 36/76 (47.37%), Postives = 48/76 (63.16%), Query Frame = 3
Query:  180 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLK 407
            VPD+G+RQ MNLL  G ++      L P   +  PP  G +GGG TAKDA+GND+   ++L +H  GDR L +GLK
Sbjct:   10 VPDLGRRQFMNLLTFGTITGVAAGALYPAVKYLIPPSSGGSGGGVTAKDALGNDVKVTEFLASHNAGDRVLAQGLK 85          
BLAST of DY260433 vs. ExPASy Swiss-Prot
Match: UCRI_PROMS (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain AS9601) GN=petC PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 6.967e-14
Identity = 39/83 (46.99%), Postives = 49/83 (59.04%), Query Frame = 3
Query:  159 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLK 407
            T + ++ VP MG+RQ MNLL  G  +      L P A +F P   G  GGGT+AKD +GN I    WL TH  GDR+L +GLK
Sbjct:    2 TQLSSNDVPSMGRRQFMNLLTFGTATGVALGALYPVANYFMPLRAGGGGGGTSAKDELGNPITKTGWLATHQAGDRSLVQGLK 84          
BLAST of DY260433 vs. ExPASy Swiss-Prot
Match: UCRI_PROM4 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9211) GN=petC PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 6.967e-14
Identity = 40/80 (50.00%), Postives = 50/80 (62.50%), Query Frame = 3
Query:  168 PADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLK 407
            P+D VP MG+RQ MNLL  G  +      L P A +F P   G  GGGT+AKD +GN I A+ WL+ H  GDR+L +GLK
Sbjct:    6 PSD-VPSMGRRQFMNLLTFGTATGVALGALYPVANYFMPLRAGGGGGGTSAKDELGNPITASGWLSNHPAGDRSLVQGLK 84          
BLAST of DY260433 vs. ExPASy Swiss-Prot
Match: UCRI_PROM0 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9301) GN=petC PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 6.967e-14
Identity = 39/83 (46.99%), Postives = 49/83 (59.04%), Query Frame = 3
Query:  159 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLK 407
            T + ++ VP MG+RQ MNLL  G  +      L P A +F P   G  GGGT+AKD +GN I    WL TH  GDR+L +GLK
Sbjct:    2 TQLSSNDVPSMGRRQFMNLLTFGTATGVALGALYPVANYFMPLRAGGGGGGTSAKDELGNPITKTGWLATHQAGDRSLVQGLK 84          
The following BLAST results are available for this feature:
BLAST of DY260433 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
UCRI_NOSP71.404e-1451.32Cytochrome b6-f complex iron-sulfur subunit OS=Nos... [more]
UCRI_PROMM1.833e-1445.78Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_PROM31.833e-1445.78Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_NOSSP2.394e-1451.32Cytochrome b6-f complex iron-sulfur subunit OS=Nos... [more]
UCRI_CYAP42.394e-1451.32Cytochrome b6-f complex iron-sulfur subunit OS=Cya... [more]
UCRI_MASLA3.127e-1450.00Cytochrome b6-f complex iron-sulfur subunit OS=Mas... [more]
UCRIB_SYNY33.127e-1447.37Cytochrome b6-f complex iron-sulfur subunit 2 OS=S... [more]
UCRI_PROMS6.967e-1446.99Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_PROM46.967e-1450.00Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_PROM06.967e-1446.99Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YH16FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260433 ID=DY260433; Name=DY260433; organism=Citrus clementina; type=EST; length=1283bp
CAATGGCTTCCTCCTCTTCTCTCTCCTCAGCAACTCCTTCTCAGCTATGC
TCAAGCAAGAGTGGTATGTTCTGTCCATCGAGAGCTTTTCTTGTGAAACC
AGCAAGGACCCAGATGGTGACAAAGAATCCAATGGGAATGAAGATCAAGT
GCCAGGCTACAAGTATTCCAGCTGATAGAGTGCCTGATATGGGCAAGAGG
CAGCTCATGAATTTGCTTCTCTTGGGTGCTGTTTCTCTTCCCACTGGATT
TATGTTGGTTCCTTATGCGACCTTCTTTGCCCCACCTGGTTTAGGAAGTG
CTGGTGGTGGTACTACTGCCAAGGATGCCATTGGCAATGACATCATTGCC
GCTGATTGGCTTAACACGCACGGCCCTGGGGACCGAACCCTCACCGAAGG
ATTGAAGGTACAAATCAATTTCTTTGAAAATTATTGCTTAGTTCATTGCA
AACTTGACTCTTGGTTCTAAAAAACTTAATAAATTGTCATGAGATAATCT
GCAATTGCCATGAACCTCAATTTTTGGTTGTGTTTACACGTGAAGCAGGA
TTTCTCACATTTGCCACTTATTCTGTAGCCCCAATTGTGAACTCCTTCCC
CTGAATGCTGGAGTTTTCTCGTACGTGAAAGGTCGCTCTACAAGTAGATT
CATAAGGAGATCCCACCCTACCTTGTTGTGGAAAAAGACAAAACACCTTG
CATCCAAGGGAATCCATGCCGTCCGCCCTCCCCCTTGAAGTGGGGTGCCC
TGGGAATTCACCTGAGAACAAATTCCCCCGGCCCCGGCCCCGAATCCCCA
TAACAATACCCAGGAAAAATTGGTGAAAAGGCCCGCCCCCTTGTCCTTGG
CACTTGGGCCCCAGCCCACCATTGAAAAAGGGAAAGGGACTCCTCCCTTC
CCCGGAACCGAAAAACAAATTTCCAAACGGGGGAAACCCCCCGGGGGGGC
CTAAAAAACCTTGTTCCCGGGCCCCCGCCCTTCCAAAAATCCAAATTTTT
TGGCCCCGGCGCGGTTTTCCTCTTCCGCCACCCCCCCAAAAACCAACCTG
GAAACGCAAAACCCGCCTATTCACAAAAAAAAGCTCATACAACAAAGAAA
AAACATCCCCTCGGGCCTGAACCCCACCCCCCCTCCCTGGGAACCCCGCG
GGCCAACCTTCGAAAACCATTTTTTCCCCCTCTCTCTCTCCCCTCCCTTT
CTCCTTGTTACTCCCCACCACAAACACCCCTTCACACCCCCCCCACCCCA
CCAAAGGGCGTCGGCAGGCTGCCCCCCCCCCGC
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