DY260437

Overview
NameDY260437
Unique NameDY260437
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1252
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260437 vs. ExPASy Swiss-Prot
Match: FLS1_ARATH (Flavonol synthase/flavanone 3-hydroxylase OS=Arabidopsis thaliana GN=FLS1 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.961e-13
Identity = 39/106 (36.79%), Postives = 63/106 (59.43%), Query Frame = 2
Query:    2 EVYSMELKSLAMNLISKMGKVLNIKDEELREFFDNGFQS--MRMNYYPPCPQPEKVMGLTPHSDGSALTILLQINEVEGLQIKNDGKWIPITPLPNAFIVNIGDTL 313
            E Y++ +K L+  L+  +   L +K + L+E          M++NYYPPCP+P+  +G+  H+D S +T+L+  NEV GLQ+  D  W     +P+A IV+IGD +
Sbjct:  160 EEYAVHVKKLSETLLGILSDGLGLKRDALKEGLGGEMAEYMMKINYYPPCPRPDLALGVPAHTDLSGITLLVP-NEVPGLQVFKDDHWFDAEYIPSAVIVHIGDQI 264          
BLAST of DY260437 vs. ExPASy Swiss-Prot
Match: ACCO2_DORSP (1-aminocyclopropane-1-carboxylate oxidase 2 OS=Doritaenopsis sp. GN=ACO2 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.561e-13
Identity = 37/108 (34.26%), Postives = 63/108 (58.33%), Query Frame = 2
Query:    8 YSMELKSLAMNLISKMGKVLNIKDEELREFFDNGFQSM-----RMNYYPPCPQPEKVMGLTPHSDGSALTILLQINEVEGLQIKNDGKWIPITPLPNAFIVNIGDTLE 316
            ++ EL+ LA  L+  + + L ++   L+  F  G   +     +++ YPPCP+P+ + GL  H+D   + +L Q ++V GLQ+  D +WI + PL  + +VNIGD LE
Sbjct:  119 FARELEKLAERLLDLLCEDLGLEKGYLKRVFCGGSDGLPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDREWIEVPPLRYSIVVNIGDQLE 226          
BLAST of DY260437 vs. ExPASy Swiss-Prot
Match: ACCH2_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 2 OS=Arabidopsis thaliana GN=At1g06640 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.561e-13
Identity = 38/103 (36.89%), Postives = 58/103 (56.31%), Query Frame = 2
Query:    8 YSMELKSLAMNLISKMGKVLNIKDEELREFFDNGFQSMRMNYYPPCPQPEKVMGLTPHSDGSALTILLQINEVEGLQIKNDGKWIPITPLPNAFIVNIGDTLE 316
            YS ++  L   L   + + L +    L++        M  +Y+PPCP+P+   G + HSDGS LT+LL  N +EGLQ+  +G W  +  +P A I+NIGD L+
Sbjct:  184 YSKQVMILGEFLFELLSEALGLNPNHLKDMECLKGLRMLCHYFPPCPEPDLTFGTSKHSDGSFLTVLLPDN-IEGLQVCREGYWFDVPHVPGALIINIGDLLQ 285          
BLAST of DY260437 vs. ExPASy Swiss-Prot
Match: G3O23_WHEAT (Gibberellin 3-beta-dioxygenase 2-3 OS=Triticum aestivum GN=GA3ox2-3 PE=2 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 3.062e-13
Identity = 33/113 (29.20%), Postives = 61/113 (53.98%), Query Frame = 2
Query:    2 EVYSMELKSLAMNLISKMGKVLNIKDEEL------REFFDNGFQSMRMNYYPPCPQPEKVMGLTPHSDGSALTILLQINEVEGLQIKNDG--KWIPITPLPNAFIVNIGDTLE 316
            E +  E+++LA  L+      L +  E++      ++  +    +M +N+YP CP P++ +GL  H+D    T +LQ + V GLQ+   G  +W+ +  +P A +VN+GD  +
Sbjct:  164 EEFHREMRALADKLLELFLVALGLTGEQVAAVESEQKIAETMTATMHLNWYPKCPDPKRALGLIAHTDSGFFTFVLQ-SLVPGLQLFRHGPDRWVTVPAVPGAMVVNVGDLFQ 275          

HSP 2 Score: 33.4982 bits (75), Expect = 3.062e-13
Identity = 22/67 (32.84%), Postives = 32/67 (47.76%), Query Frame = 3
Query:  315 SIEHRAIVNSIQERLSIATFYTKRLDGEIYPASSLISEKTPALFRRVTVEEYFRSRFARELRGKSHL 515
            S+ HRA+VN   +R+S+  F       ++ P    ++  TPA +R VT  EY   R      G S L
Sbjct:  284 SVYHRAVVNRESDRISLGYFLGPPAHVKVAPLREALA-GTPAAYRAVTWPEYMGVRKKAFTTGASAL 349          
BLAST of DY260437 vs. ExPASy Swiss-Prot
Match: G3O22_WHEAT (Gibberellin 3-beta-dioxygenase 2-2 OS=Triticum aestivum GN=GA3ox2-2 PE=2 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 3.062e-13
Identity = 33/113 (29.20%), Postives = 61/113 (53.98%), Query Frame = 2
Query:    2 EVYSMELKSLAMNLISKMGKVLNIKDEEL------REFFDNGFQSMRMNYYPPCPQPEKVMGLTPHSDGSALTILLQINEVEGLQIKNDG--KWIPITPLPNAFIVNIGDTLE 316
            E +  E+++LA  L+      L +  E++      ++  +    +M +N+YP CP P++ +GL  H+D    T +LQ + V GLQ+   G  +W+ +  +P A +VN+GD  +
Sbjct:  164 EEFHREMRALADKLLELFLVALGLTGEQVAAVESEQKIAETMTATMHLNWYPKCPDPKRALGLIAHTDSGFFTFVLQ-SLVPGLQLFRHGPDRWVTVPAVPGAMVVNVGDLFQ 275          

HSP 2 Score: 33.4982 bits (75), Expect = 3.062e-13
Identity = 22/67 (32.84%), Postives = 32/67 (47.76%), Query Frame = 3
Query:  315 SIEHRAIVNSIQERLSIATFYTKRLDGEIYPASSLISEKTPALFRRVTVEEYFRSRFARELRGKSHL 515
            S+ HRA+VN   +R+S+  F       ++ P    ++  TPA +R VT  EY   R      G S L
Sbjct:  284 SVYHRAVVNRDSDRISLGYFLGPPAHVKVAPLREALA-GTPAAYRAVTWPEYMGVRKKAFTTGASAL 349          
BLAST of DY260437 vs. ExPASy Swiss-Prot
Match: FLS_EUSGR (Flavonol synthase/flavanone 3-hydroxylase OS=Eustoma grandiflorum GN=FLS PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 3.345e-13
Identity = 41/107 (38.32%), Postives = 65/107 (60.75%), Query Frame = 2
Query:    2 EVYSMELKSLAMNLISKMGKVLNIKDEELREFF--DNGFQSMRMNYYPPCPQPEKVMGLTPHSDGSALTILLQINEVEGLQIKNDGKWIPITPLPNAFIVNIGDTLE 316
            E Y+  L+ +  NL   +   L+++    ++    D+    M++NYYPPCP+P+  +G+  H+D SA+T+L+  NEV GLQ+  DG W     +PNA IV+IGD +E
Sbjct:  160 EEYAKRLQLVVDNLFKYLSLGLDLEPNSFKDGAGGDDLVYLMKINYYPPCPRPDLALGVA-HTDMSAITVLVP-NEVPGLQVYKDGHWYDCKYIPNALIVHIGDQVE 264          
BLAST of DY260437 vs. ExPASy Swiss-Prot
Match: ACCO_ACTDE (1-aminocyclopropane-1-carboxylate oxidase OS=Actinidia deliciosa GN=ACO PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 3.345e-13
Identity = 35/106 (33.02%), Postives = 64/106 (60.38%), Query Frame = 2
Query:    8 YSMELKSLAMNLISKMGKVLNIKDEELREFFDNGFQ---SMRMNYYPPCPQPEKVMGLTPHSDGSALTILLQINEVEGLQIKNDGKWIPITPLPNAFIVNIGDTLE 316
            ++ +L+ LA  L+  + + + ++   L++ F          +++ YPPCP+PE + GL  H+D   + +L Q N+V GLQ+  DG+WI + P+ ++ ++NIGD LE
Sbjct:  117 FAEKLEKLAEQLLDLLCENVGLEKGYLKKAFYGSKGPTFGTKVSNYPPCPRPELIKGLRAHTDAGGIILLFQDNKVSGLQLLKDGEWIDVPPMKHSIVINIGDQLE 222          
BLAST of DY260437 vs. ExPASy Swiss-Prot
Match: ACCO1_MALDO (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Malus domestica PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 3.345e-13
Identity = 33/106 (31.13%), Postives = 65/106 (61.32%), Query Frame = 2
Query:    8 YSMELKSLAMNLISKMGKVLNIKDEELREFFDNGFQ---SMRMNYYPPCPQPEKVMGLTPHSDGSALTILLQINEVEGLQIKNDGKWIPITPLPNAFIVNIGDTLE 316
            +++EL+ LA  L+  + + L ++   L++ F          +++ YPPCP+P+ + GL  HSD   + +L Q ++V GLQ+  DG+W+ + P+ ++ ++N+GD +E
Sbjct:  117 FAVELEKLAEKLLDLLCENLGLEKGYLKKVFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHSDAGGIILLFQDDKVSGLQLLKDGEWVDVPPMHHSIVINLGDQIE 222          
BLAST of DY260437 vs. ExPASy Swiss-Prot
Match: G3O21_WHEAT (Gibberellin 3-beta-dioxygenase 2-1 OS=Triticum aestivum GN=GA3ox2-1 PE=1 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 3.977e-13
Identity = 33/113 (29.20%), Postives = 60/113 (53.10%), Query Frame = 2
Query:    2 EVYSMELKSLAMNLISKMGKVLNIKDEEL------REFFDNGFQSMRMNYYPPCPQPEKVMGLTPHSDGSALTILLQINEVEGLQIKNDG--KWIPITPLPNAFIVNIGDTLE 316
            E +  E+++LA  L+      L +  E++       +  +    +M +N+YP CP P++ +GL  H+D    T +LQ + V GLQ+   G  +W+ +  +P A +VN+GD  +
Sbjct:  164 EEFHREMRALADKLLELFLVALGLTGEQVAAVESEHKIAETMTATMHLNWYPKCPDPKRALGLIAHTDSGFFTFVLQ-SLVPGLQLFRHGPDRWVTVPAVPGAMVVNVGDLFQ 275          

HSP 2 Score: 33.4982 bits (75), Expect = 3.977e-13
Identity = 22/67 (32.84%), Postives = 32/67 (47.76%), Query Frame = 3
Query:  315 SIEHRAIVNSIQERLSIATFYTKRLDGEIYPASSLISEKTPALFRRVTVEEYFRSRFARELRGKSHL 515
            S+ HRA+VN   +R+S+  F       ++ P    ++  TPA +R VT  EY   R      G S L
Sbjct:  284 SVYHRAVVNRDSDRISLGYFLGPPAHVKVAPLREALA-GTPAAYRAVTWPEYMGVRKKAFTTGASAL 349          
BLAST of DY260437 vs. ExPASy Swiss-Prot
Match: ACCO_DENCR (1-aminocyclopropane-1-carboxylate oxidase OS=Dendrobium crumenatum GN=ACO PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 4.368e-13
Identity = 36/108 (33.33%), Postives = 63/108 (58.33%), Query Frame = 2
Query:    8 YSMELKSLAMNLISKMGKVLNIKDEELREFFDNGFQSM-----RMNYYPPCPQPEKVMGLTPHSDGSALTILLQINEVEGLQIKNDGKWIPITPLPNAFIVNIGDTLE 316
            +++ L+ LA  L+  + + L ++   L+  F  G   +     +++ YPPCP+PE + GL  H+D   + +L Q + V GLQ+  D +WI + P+ ++ +VNIGD LE
Sbjct:  113 FALGLEKLAERLLDLLCENLGLEKGYLKRVFCGGSDGLPTFGTKVSNYPPCPKPELIKGLRAHTDAGGIILLFQDDTVSGLQLLKDEEWIDVPPMRHSIVVNIGDQLE 220          
The following BLAST results are available for this feature:
BLAST of DY260437 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
FLS1_ARATH1.961e-1336.79Flavonol synthase/flavanone 3-hydroxylase OS=Arabi... [more]
ACCO2_DORSP2.561e-1334.261-aminocyclopropane-1-carboxylate oxidase 2 OS=Dor... [more]
ACCH2_ARATH2.561e-1336.891-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
G3O23_WHEAT3.062e-1329.20Gibberellin 3-beta-dioxygenase 2-3 OS=Triticum aes... [more]
G3O22_WHEAT3.062e-1329.20Gibberellin 3-beta-dioxygenase 2-2 OS=Triticum aes... [more]
FLS_EUSGR3.345e-1338.32Flavonol synthase/flavanone 3-hydroxylase OS=Eusto... [more]
ACCO_ACTDE3.345e-1333.021-aminocyclopropane-1-carboxylate oxidase OS=Actin... [more]
ACCO1_MALDO3.345e-1331.131-aminocyclopropane-1-carboxylate oxidase 1 OS=Mal... [more]
G3O21_WHEAT3.977e-1329.20Gibberellin 3-beta-dioxygenase 2-1 OS=Triticum aes... [more]
ACCO_DENCR4.368e-1333.331-aminocyclopropane-1-carboxylate oxidase OS=Dendr... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YH20FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260437 ID=DY260437; Name=DY260437; organism=Citrus clementina; type=EST; length=1252bp
GGAAGTTTACTCAATGGAGTTAAAATCTTTGGCCATGAACCTGATATCGA
AAATGGGAAAAGTTTTAAATATCAAAGATGAAGAATTGAGAGAATTCTTT
GACAATGGTTTCCAATCAATGAGGATGAACTATTACCCTCCATGTCCTCA
GCCAGAAAAGGTTATGGGCCTCACCCCTCATTCTGATGGCTCTGCTCTTA
CCATTCTGCTACAAATCAATGAAGTAGAAGGTCTCCAGATCAAGAACGAT
GGAAAATGGATTCCTATCACACCGCTGCCAAATGCTTTCATTGTCAACAT
CGGAGACACATTAGAGCATTGAGCATCGTGCAATTGTGAACTCTATACAA
GAAAGACTTTCCATTGCCACATTTTACACAAAGAGATTAGATGGTGAAAT
ATATCCAGCATCCAGTTTGATATCTGAAAAAACTCCTGCATTGTTTCGAA
GAGTGACGGTTGAAGAATACTTTAGGAGCCGATTTGCTCGTGAGCTTAGG
GGAAAATCTCACCTGGATGACCTGAGAATTCAACATGGTCGAGGCTAGCA
TAAATTATTTTGGATAGTTGCAGATTTGTGCCAGGGAATTTTCTGATGAT
AATTGTGCTTATTTTGGACCCGTGTCCTTTCATTTTTGGAATAAAATTTT
TGCCGGCCTTGTCAGTTTTTTATCAGATTTCCAAGACACATTTTCCCTTA
AAAAAAAAAAAAAAAAAAAAAAACCCCCACTTTCTTGGAAAAAGTTGGGA
TCAATAAAAAAGCCTTTGCCTTACCATTTTGTTGGCACTAAACGGGTCCA
CCATCCATACAAAAAAAAAACCATTTTTTTCCCCCCACCCCCAGAAACAC
CCCCCCATAGGTGATTCAACATAACCTGGCCACAACCTTTTTTCCGCCTC
CCCCCCCCGCGCCCGCCTCCCCAAAAACCTCAAATGTGACACTCCTCCCC
ACTAAAACAAACCTCTCTCTCACTCTCTGTAACTAAAACCCTCTTGCGTC
CTTCGACACACCAACAGCCAAACTTTCTCTCCATACACCGATAGAACACT
CACTCCCCTTCATCATTCAAAAAAAAACCTGCTCTTTCCTCAAATAGCCA
GACAACAACACCAACCCCAACGAGCGGCACTATACTATCACAAAGCATGG
CCACCGCACCCGCGCGCGCACACGCACACCACCCAACTCTACGCACCCCC
TCCCTCCTCATCGCTCGCTAACAATATAACCCCGACGTCAACCACCGGTC
TT
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