DY260437

Overview
NameDY260437
Unique NameDY260437
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1252
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260437 vs. ExPASy Swiss-Prot
Match: LDOX_PERFR (Leucoanthocyanidin dioxygenase OS=Perilla frutescens GN=ANS PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 5.705e-13
Identity = 40/106 (37.74%), Postives = 63/106 (59.43%), Query Frame = 2
Query:    8 YSMELKSLAMNLISKMGKVLNIKDEELREFFDNG---FQSMRMNYYPPCPQPEKVMGLTPHSDGSALTILLQINEVEGLQIKNDGKWIPITPLPNAFIVNIGDTLE 316
            Y+ +L++LA  ++S +   L ++   L +           M++N+YP CPQPE  +G   H+D SALT +L  N V GLQ+  + KW+    +PN+ I++IGDTLE
Sbjct:  178 YAKQLRALATKILSVLSIGLGLEKGRLEKEVGGAEDLIVQMKINFYPKCPQPELALGWEAHTDVSALTFILH-NMVPGLQLFYEDKWVTAKCVPNSIIMHIGDTLE 282          
BLAST of DY260437 vs. ExPASy Swiss-Prot
Match: ACCO3_CUCME (1-aminocyclopropane-1-carboxylate oxidase 3 OS=Cucumis melo GN=ACO3 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 7.451e-13
Identity = 34/106 (32.08%), Postives = 63/106 (59.43%), Query Frame = 2
Query:    8 YSMELKSLAMNLISKMGKVLNIKDEELREFFDNGFQ---SMRMNYYPPCPQPEKVMGLTPHSDGSALTILLQINEVEGLQIKNDGKWIPITPLPNAFIVNIGDTLE 316
            ++ EL+ LA  ++  + + L ++   L++ F          +++ YPPCP+PE + GL  H+D   L +L Q ++V GL +  DGKW+ + P+ ++ ++N+GD LE
Sbjct:  118 FADELEKLAEEVLDLLCENLGLEKGYLKKVFYGSKGPNFGTKVSNYPPCPKPELIKGLRAHTDAGGLILLFQDDKVSGLHVLKDGKWVDVPPMHHSIVINLGDQLE 223          
BLAST of DY260437 vs. ExPASy Swiss-Prot
Match: ACCO1_CUCME (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Cucumis melo GN=ACO1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 7.451e-13
Identity = 35/106 (33.02%), Postives = 64/106 (60.38%), Query Frame = 2
Query:    8 YSMELKSLAMNLISKMGKVLNIKDEELREFFDNGFQ---SMRMNYYPPCPQPEKVMGLTPHSDGSALTILLQINEVEGLQIKNDGKWIPITPLPNAFIVNIGDTLE 316
            ++ +L++LA  L+  + + L ++   L++ F          +++ YPPCP+P+ + GL  H+D   + +L Q ++V GLQ+  DG WI + P+ +A +VN+GD LE
Sbjct:  117 FAKKLENLAEELLDLLCENLGLEKGYLKKAFYGSKGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGNWIDVPPMRHAIVVNLGDQLE 222          
BLAST of DY260437 vs. ExPASy Swiss-Prot
Match: LDOX_ARATH (Leucoanthocyanidin dioxygenase OS=Arabidopsis thaliana GN=LDOX PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 9.732e-13
Identity = 39/106 (36.79%), Postives = 63/106 (59.43%), Query Frame = 2
Query:    8 YSMELKSLAMNLISKMGKVLNIKDEELREF---FDNGFQSMRMNYYPPCPQPEKVMGLTPHSDGSALTILLQINEVEGLQIKNDGKWIPITPLPNAFIVNIGDTLE 316
            Y+  L+ LA  +   +   L ++ + L +     +     M++NYYP CPQPE  +G+  H+D SALT +L  N V GLQ+  +GKW+    +P++ +++IGDTLE
Sbjct:  172 YAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILH-NMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLE 276          
BLAST of DY260437 vs. ExPASy Swiss-Prot
Match: IDS3_HORVU (2'-deoxymugineic-acid 2'-dioxygenase OS=Hordeum vulgare GN=IDS3 PE=1 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 1.660e-12
Identity = 34/105 (32.38%), Postives = 57/105 (54.29%), Query Frame = 2
Query:    2 EVYSMELKSLAMNLISKMGKVLNIKDEELREFFDNGFQSMRMNYYPPCPQPEKVMGLTPHSDGSALTILLQINEVEGLQIKNDGKWIPITPLPNAFIVNIGDTLE 316
            E ++ + + +   L+  + + + I+ +        G   + +N+YP CP P+K +G  PH D + +T+LL    V GL++   G WI + P PNAF+VN G  LE
Sbjct:  150 EKFTSQTRDVGKELLRLLCEGMGIQADYFEGDLSGGNVILNINHYPSCPNPDKALGQPPHCDRNLITLLLP-GAVNGLEVSYKGDWIKVDPAPNAFVVNFGQQLE 253          
BLAST of DY260437 vs. ExPASy Swiss-Prot
Match: ACCO3_PETHY (1-aminocyclopropane-1-carboxylate oxidase 3 OS=Petunia hybrida GN=ACO3 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.168e-12
Identity = 34/106 (32.08%), Postives = 63/106 (59.43%), Query Frame = 2
Query:    8 YSMELKSLAMNLISKMGKVLNIKDEELREFFDNGFQ---SMRMNYYPPCPQPEKVMGLTPHSDGSALTILLQINEVEGLQIKNDGKWIPITPLPNAFIVNIGDTLE 316
            ++  L+ LA  L+  + + L ++   L++ F          +++ YPPCP+P+ + GL  H+D   + +L Q ++V GLQ+  DG+WI + P+ ++ +VN+GD LE
Sbjct:  117 FAKRLEKLAEELLDLLCENLGLEKGYLKKAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPMRHSIVVNLGDQLE 222          
BLAST of DY260437 vs. ExPASy Swiss-Prot
Match: ACCO2_SOLLC (1-aminocyclopropane-1-carboxylate oxidase 2 OS=Solanum lycopersicum GN=ACO2 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.168e-12
Identity = 34/106 (32.08%), Postives = 61/106 (57.55%), Query Frame = 2
Query:    8 YSMELKSLAMNLISKMGKVLNIKDEELREFFDNGFQ---SMRMNYYPPCPQPEKVMGLTPHSDGSALTILLQINEVEGLQIKNDGKWIPITPLPNAFIVNIGDTLE 316
            +   L+ LA  L+  + + L ++   L+  F          +++ YPPCP+P+ + GL  H+D   + +L Q ++V GLQ+  DG+WI + P+ ++ +VN+GD LE
Sbjct:  117 FRKRLEKLAEELLDLLCENLGLEKSYLKNTFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGRWIDVPPMRHSIVVNLGDQLE 222          
BLAST of DY260437 vs. ExPASy Swiss-Prot
Match: ACCO2_MALDO (1-aminocyclopropane-1-carboxylate oxidase 2 OS=Malus domestica GN=ACO2 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.168e-12
Identity = 32/106 (30.19%), Postives = 65/106 (61.32%), Query Frame = 2
Query:    8 YSMELKSLAMNLISKMGKVLNIKDEELREFFDNGFQ---SMRMNYYPPCPQPEKVMGLTPHSDGSALTILLQINEVEGLQIKNDGKWIPITPLPNAFIVNIGDTLE 316
            +++EL+ LA  L+  + + L ++   L++ F          +++ YPPCP+P+ + GL  H+D   + +L Q ++V GLQ+  DG+W+ + P+ ++ ++N+GD +E
Sbjct:  117 FAVELEKLAEKLLDLLCENLGLEKGYLKKAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGEWMDVPPVHHSIVINLGDQIE 222          
BLAST of DY260437 vs. ExPASy Swiss-Prot
Match: ACCO1_ORYSI (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Oryza sativa subsp. indica GN=ACO1 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.168e-12
Identity = 35/107 (32.71%), Postives = 64/107 (59.81%), Query Frame = 2
Query:    8 YSMELKSLAMNLISKMGKVLNIKDEELREFFDNGFQS----MRMNYYPPCPQPEKVMGLTPHSDGSALTILLQINEVEGLQIKNDGKWIPITPLPNAFIVNIGDTLE 316
            ++ EL++LA  L+  + + L ++   L + F     +     +++ YPPCP+P+ V GL  H+D   + +L Q + V GLQ+  DG+W+ + P+ ++ +VN+GD LE
Sbjct:  122 FAAELETLAERLLDLLCENLGLEKGYLTKAFRGPAGAPTFGTKVSSYPPCPRPDLVKGLRAHTDAGGIILLFQDDSVGGLQLLKDGEWVDVPPMRHSIVVNLGDQLE 228          
BLAST of DY260437 vs. ExPASy Swiss-Prot
Match: ACCO_PEA (1-aminocyclopropane-1-carboxylate oxidase OS=Pisum sativum GN=ACO PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.832e-12
Identity = 33/106 (31.13%), Postives = 64/106 (60.38%), Query Frame = 2
Query:    8 YSMELKSLAMNLISKMGKVLNIKDEELREFFDNGFQ---SMRMNYYPPCPQPEKVMGLTPHSDGSALTILLQINEVEGLQIKNDGKWIPITPLPNAFIVNIGDTLE 316
            ++++L+ LA  L+  + + L ++   L++ F          +++ YPPCP+PE + GL  H+D   + +L Q ++V GLQ+  D +WI + P+ ++ ++N+GD LE
Sbjct:  117 FALKLEELAEELLDLLCENLGLEKGYLKKAFYGSKGPNFGTKVSNYPPCPKPELIKGLRAHTDAGGIILLFQDDKVSGLQLLKDDQWIDVPPMRHSIVINLGDQLE 222          
The following BLAST results are available for this feature:
BLAST of DY260437 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
LDOX_PERFR5.705e-1337.74Leucoanthocyanidin dioxygenase OS=Perilla frutesce... [more]
ACCO3_CUCME7.451e-1332.081-aminocyclopropane-1-carboxylate oxidase 3 OS=Cuc... [more]
ACCO1_CUCME7.451e-1333.021-aminocyclopropane-1-carboxylate oxidase 1 OS=Cuc... [more]
LDOX_ARATH9.732e-1336.79Leucoanthocyanidin dioxygenase OS=Arabidopsis thal... [more]
IDS3_HORVU1.660e-1232.382'-deoxymugineic-acid 2'-dioxygenase OS=Hordeum vu... [more]
ACCO3_PETHY2.168e-1232.081-aminocyclopropane-1-carboxylate oxidase 3 OS=Pet... [more]
ACCO2_SOLLC2.168e-1232.081-aminocyclopropane-1-carboxylate oxidase 2 OS=Sol... [more]
ACCO2_MALDO2.168e-1230.191-aminocyclopropane-1-carboxylate oxidase 2 OS=Mal... [more]
ACCO1_ORYSI2.168e-1232.711-aminocyclopropane-1-carboxylate oxidase 1 OS=Ory... [more]
ACCO_PEA2.832e-1231.131-aminocyclopropane-1-carboxylate oxidase OS=Pisum... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YH20FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260437 ID=DY260437; Name=DY260437; organism=Citrus clementina; type=EST; length=1252bp
GGAAGTTTACTCAATGGAGTTAAAATCTTTGGCCATGAACCTGATATCGA
AAATGGGAAAAGTTTTAAATATCAAAGATGAAGAATTGAGAGAATTCTTT
GACAATGGTTTCCAATCAATGAGGATGAACTATTACCCTCCATGTCCTCA
GCCAGAAAAGGTTATGGGCCTCACCCCTCATTCTGATGGCTCTGCTCTTA
CCATTCTGCTACAAATCAATGAAGTAGAAGGTCTCCAGATCAAGAACGAT
GGAAAATGGATTCCTATCACACCGCTGCCAAATGCTTTCATTGTCAACAT
CGGAGACACATTAGAGCATTGAGCATCGTGCAATTGTGAACTCTATACAA
GAAAGACTTTCCATTGCCACATTTTACACAAAGAGATTAGATGGTGAAAT
ATATCCAGCATCCAGTTTGATATCTGAAAAAACTCCTGCATTGTTTCGAA
GAGTGACGGTTGAAGAATACTTTAGGAGCCGATTTGCTCGTGAGCTTAGG
GGAAAATCTCACCTGGATGACCTGAGAATTCAACATGGTCGAGGCTAGCA
TAAATTATTTTGGATAGTTGCAGATTTGTGCCAGGGAATTTTCTGATGAT
AATTGTGCTTATTTTGGACCCGTGTCCTTTCATTTTTGGAATAAAATTTT
TGCCGGCCTTGTCAGTTTTTTATCAGATTTCCAAGACACATTTTCCCTTA
AAAAAAAAAAAAAAAAAAAAAAACCCCCACTTTCTTGGAAAAAGTTGGGA
TCAATAAAAAAGCCTTTGCCTTACCATTTTGTTGGCACTAAACGGGTCCA
CCATCCATACAAAAAAAAAACCATTTTTTTCCCCCCACCCCCAGAAACAC
CCCCCCATAGGTGATTCAACATAACCTGGCCACAACCTTTTTTCCGCCTC
CCCCCCCCGCGCCCGCCTCCCCAAAAACCTCAAATGTGACACTCCTCCCC
ACTAAAACAAACCTCTCTCTCACTCTCTGTAACTAAAACCCTCTTGCGTC
CTTCGACACACCAACAGCCAAACTTTCTCTCCATACACCGATAGAACACT
CACTCCCCTTCATCATTCAAAAAAAAACCTGCTCTTTCCTCAAATAGCCA
GACAACAACACCAACCCCAACGAGCGGCACTATACTATCACAAAGCATGG
CCACCGCACCCGCGCGCGCACACGCACACCACCCAACTCTACGCACCCCC
TCCCTCCTCATCGCTCGCTAACAATATAACCCCGACGTCAACCACCGGTC
TT
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