DY260437

Overview
NameDY260437
Unique NameDY260437
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1252
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260437 vs. ExPASy Swiss-Prot
Match: ACCO4_SOLLC (1-aminocyclopropane-1-carboxylate oxidase 4 OS=Solanum lycopersicum GN=ACO4 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.397e-11
Identity = 33/106 (31.13%), Postives = 61/106 (57.55%), Query Frame = 2
Query:    8 YSMELKSLAMNLISKMGKVLNIKDEELREFFDNGFQ---SMRMNYYPPCPQPEKVMGLTPHSDGSALTILLQINEVEGLQIKNDGKWIPITPLPNAFIVNIGDTLE 316
            ++  L+ LA  L+  + + L ++   L+  F          +++ YPPCP+P+ + GL  H+D   + +L Q ++V GLQ+  D +WI + P+ ++ +VN+GD LE
Sbjct:  117 FAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDEQWIDVPPMRHSIVVNLGDQLE 222          
BLAST of DY260437 vs. ExPASy Swiss-Prot
Match: ACCO1_SOLLC (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Solanum lycopersicum GN=ACO1 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 2.397e-11
Identity = 33/106 (31.13%), Postives = 61/106 (57.55%), Query Frame = 2
Query:    8 YSMELKSLAMNLISKMGKVLNIKDEELREFFDNGFQ---SMRMNYYPPCPQPEKVMGLTPHSDGSALTILLQINEVEGLQIKNDGKWIPITPLPNAFIVNIGDTLE 316
            ++  L+ LA  L+  + + L ++   L+  F          +++ YPPCP+P+ + GL  H+D   + +L Q ++V GLQ+  D +WI + P+ ++ +VN+GD LE
Sbjct:  117 FAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDEQWIDVPPMRHSIVVNLGDQLE 222          
BLAST of DY260437 vs. ExPASy Swiss-Prot
Match: FLS_SOLTU (Flavonol synthase/flavanone 3-hydroxylase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.131e-11
Identity = 37/107 (34.58%), Postives = 63/107 (58.88%), Query Frame = 2
Query:    2 EVYSMELKSLAMNLISKMGKVLNIKDEELREFF--DNGFQSMRMNYYPPCPQPEKVMGLTPHSDGSALTILLQINEVEGLQIKNDGKWIPITPLPNAFIVNIGDTLE 316
            E Y+  L+ +A  +   +   L ++  E+ E    ++    +++NYYPPCP+P+  +G+  H+D S +T+L+  NEV   Q+  DG W  +  +PNA IV+IGD +E
Sbjct:  177 EEYAKWLRKVADGIFRSLSLGLGLEGHEMMEAAGSEDIVYMLKINYYPPCPRPDLALGVVAHTDMSYITLLVP-NEV---QVFKDGHWYDVNYIPNAIIVHIGDQVE 279          
BLAST of DY260437 vs. ExPASy Swiss-Prot
Match: ACCO_PERAE (1-aminocyclopropane-1-carboxylate oxidase OS=Persea americana GN=ACO PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.131e-11
Identity = 32/108 (29.63%), Postives = 62/108 (57.41%), Query Frame = 2
Query:    8 YSMELKSLAMNLISKMGKVLNIKDEELREFFDNGFQSM-----RMNYYPPCPQPEKVMGLTPHSDGSALTILLQINEVEGLQIKNDGKWIPITPLPNAFIVNIGDTLE 316
            ++ +L+ LA  ++  + + L ++   L+  F      +     +++ YPPCP+PE   GL  H+D   L +L Q + V GLQ+  DG+W+ + P+ ++ ++N+GD +E
Sbjct:  116 FAEKLEKLAEQVLDLLCENLGLEKGYLKMAFAGTTTGLPTFGTKVSNYPPCPRPELFKGLRAHTDAGGLILLFQDDRVAGLQLLKDGEWVDVPPMNHSIVINLGDQVE 223          
BLAST of DY260437 vs. ExPASy Swiss-Prot
Match: G3OX2_ARATH (Gibberellin 3-beta-dioxygenase 2 OS=Arabidopsis thaliana GN=GA4H PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 5.340e-11
Identity = 37/110 (33.64%), Postives = 65/110 (59.09%), Query Frame = 2
Query:    2 EVYSMELKSLAMNLISKMGKVLNIKDEELREFFDNG-FQS----MRMNYYPPCPQPEKVMGLTPHSDGSALTILLQINEVEGLQI-KNDGKWIPITPLPNAFIVNIGDTL 313
            E Y   ++ LA  L+      L +++++++    N  FQ     +++N+YP CP+P++ MGL  H+D + +TIL Q N   GLQ+ ++D  W+   P+P + +VN+GD L
Sbjct:  161 EEYEEHMQKLAAKLMWFALGSLGVEEKDIQWAGPNSDFQGTQAVIQLNHYPKCPEPDRAMGLAAHTDSTLMTILYQ-NNTAGLQVFRDDVGWVTAPPVPGSLVVNVGDLL 269          
The following BLAST results are available for this feature:
BLAST of DY260437 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
ACCO4_SOLLC2.397e-1131.131-aminocyclopropane-1-carboxylate oxidase 4 OS=Sol... [more]
ACCO1_SOLLC2.397e-1131.131-aminocyclopropane-1-carboxylate oxidase 1 OS=Sol... [more]
FLS_SOLTU3.131e-1134.58Flavonol synthase/flavanone 3-hydroxylase OS=Solan... [more]
ACCO_PERAE3.131e-1129.631-aminocyclopropane-1-carboxylate oxidase OS=Perse... [more]
G3OX2_ARATH5.340e-1133.64Gibberellin 3-beta-dioxygenase 2 OS=Arabidopsis th... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YH20FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260437 ID=DY260437; Name=DY260437; organism=Citrus clementina; type=EST; length=1252bp
GGAAGTTTACTCAATGGAGTTAAAATCTTTGGCCATGAACCTGATATCGA
AAATGGGAAAAGTTTTAAATATCAAAGATGAAGAATTGAGAGAATTCTTT
GACAATGGTTTCCAATCAATGAGGATGAACTATTACCCTCCATGTCCTCA
GCCAGAAAAGGTTATGGGCCTCACCCCTCATTCTGATGGCTCTGCTCTTA
CCATTCTGCTACAAATCAATGAAGTAGAAGGTCTCCAGATCAAGAACGAT
GGAAAATGGATTCCTATCACACCGCTGCCAAATGCTTTCATTGTCAACAT
CGGAGACACATTAGAGCATTGAGCATCGTGCAATTGTGAACTCTATACAA
GAAAGACTTTCCATTGCCACATTTTACACAAAGAGATTAGATGGTGAAAT
ATATCCAGCATCCAGTTTGATATCTGAAAAAACTCCTGCATTGTTTCGAA
GAGTGACGGTTGAAGAATACTTTAGGAGCCGATTTGCTCGTGAGCTTAGG
GGAAAATCTCACCTGGATGACCTGAGAATTCAACATGGTCGAGGCTAGCA
TAAATTATTTTGGATAGTTGCAGATTTGTGCCAGGGAATTTTCTGATGAT
AATTGTGCTTATTTTGGACCCGTGTCCTTTCATTTTTGGAATAAAATTTT
TGCCGGCCTTGTCAGTTTTTTATCAGATTTCCAAGACACATTTTCCCTTA
AAAAAAAAAAAAAAAAAAAAAAACCCCCACTTTCTTGGAAAAAGTTGGGA
TCAATAAAAAAGCCTTTGCCTTACCATTTTGTTGGCACTAAACGGGTCCA
CCATCCATACAAAAAAAAAACCATTTTTTTCCCCCCACCCCCAGAAACAC
CCCCCCATAGGTGATTCAACATAACCTGGCCACAACCTTTTTTCCGCCTC
CCCCCCCCGCGCCCGCCTCCCCAAAAACCTCAAATGTGACACTCCTCCCC
ACTAAAACAAACCTCTCTCTCACTCTCTGTAACTAAAACCCTCTTGCGTC
CTTCGACACACCAACAGCCAAACTTTCTCTCCATACACCGATAGAACACT
CACTCCCCTTCATCATTCAAAAAAAAACCTGCTCTTTCCTCAAATAGCCA
GACAACAACACCAACCCCAACGAGCGGCACTATACTATCACAAAGCATGG
CCACCGCACCCGCGCGCGCACACGCACACCACCCAACTCTACGCACCCCC
TCCCTCCTCATCGCTCGCTAACAATATAACCCCGACGTCAACCACCGGTC
TT
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