DY260441

Overview
NameDY260441
Unique NameDY260441
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1052
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260441 vs. ExPASy Swiss-Prot
Match: PSMA_SULSO (Proteasome subunit alpha OS=Sulfolobus solfataricus GN=psmA PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 3.669e-23
Identity = 61/189 (32.28%), Postives = 96/189 (50.79%), Query Frame = 2
Query:   89 GYDLSVTTFSPDGRVFQIEYAAKAVDNSG*VXXXXXXXXXXXXXXXXXXXXXXARRTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGTAIGKG 655
            GYD ++T FSPDG ++Q++YA +AV                               T IGIK K  +V+  EK  A  ++   S  ++  +  H G + AGLA+DGR ++  A++ A  +  +Y EP+ +  L + VA    + T +  +RPFG  +++ G D+  P+L+M EPSG    Y   AIG+G
Sbjct:    9 GYDRAITIFSPDGSLYQVDYAFEAVKKGW---------------------------TAIGIKSKSSVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGIDKSVPKLFMTEPSGQYMPYQAVAIGQG 170          
BLAST of DY260441 vs. ExPASy Swiss-Prot
Match: PSA5_YEAST (Proteasome component PUP2 OS=Saccharomyces cerevisiae GN=PUP2 PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 3.669e-23
Identity = 71/209 (33.97%), Postives = 100/209 (47.85%), Query Frame = 2
Query:   92 YDLSVTTFSPDGRVFQIEYAAKAVDNSG*VXXXXXXXXXXXXXXXXXXXXXXARRTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTL------------YWWLRPFGCGVILGGYDR-DGPQLYMIEPSGISYRYFGTAIGKGRPAAKTEI 679
            YD  V+TFSP+GR+FQ+EY+ +A+                               T IGI  K+G+V+GVEK   S ++   S  +I  + RH G A++GL AD R ++  A++ A  +   Y E I V+ L Q V      C L                RPFG  +++ G+D  DG QL+  EPSG  YRY   AIG G   A+ E+
Sbjct:    8 YDRGVSTFSPEGRLFQVEYSLEAIKLGS---------------------------TAIGIATKEGVVLGVEKRATSPLLESDSIEKIVEIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSV------CDLALRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAEL 183          
BLAST of DY260441 vs. ExPASy Swiss-Prot
Match: PSA4_SPIOL (Proteasome subunit alpha type-4 OS=Spinacia oleracea GN=PAC1 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 4.792e-23
Identity = 67/216 (31.02%), Postives = 112/216 (51.85%), Query Frame = 2
Query:   92 YDLSVTTFSPDGRVFQIEYAAKAVDNSG*VXXXXXXXXXXXXXXXXXXXXXXARRTVIGIKCKDGIVMGVEKLIASKMMLPG-SNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRD-GPQLYMIEPSGISYRYFGTAIGKGRPAAKTEIGKFEAFRNDLPNKGFIEL 733
            YD   T FSP+GR++Q+EYA +A+ N+G                           + IGI  KDG+V+  EK + SK++    S  +++ +  H   AVAG+ +D   ++  A+ +A  Y   Y EP+PV++L Q +       T +  LRPFG   +  G+D++ G QLYM +PSG    +  TAIG    AA++ +   + +++D+  +  ++L
Sbjct:    5 YDSRTTIFSPEGRLYQVEYAMEAIGNAG---------------------------SAIGILAKDGVVLIGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTFSYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKATAIGANNQAAQSMLK--QDYKDDVTREDAVKL 191          
BLAST of DY260441 vs. ExPASy Swiss-Prot
Match: PSMA_SULAC (Proteasome subunit alpha OS=Sulfolobus acidocaldarius GN=psmA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.067e-22
Identity = 62/190 (32.63%), Postives = 99/190 (52.11%), Query Frame = 2
Query:   89 GYDLSVTTFSPDGRVFQIEYAAKAVDNSG*VXXXXXXXXXXXXXXXXXXXXXXARRTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDR-DGPQLYMIEPSGISYRYFGTAIGKG 655
            GYD ++T FSPDG ++Q++YA +AV                               T +G+K K G+V+  EK  A++++      +I  +  H G   AGLA+DGR ++  A+S+A  +  +Y EPI ++ L + ++      T +  +RPFG  +I+GG D+   P+L M EPSG    Y+  AIG+G
Sbjct:    9 GYDRAITIFSPDGSLYQVDYAFEAVKRGW---------------------------TTLGVKTKSGVVLLAEKRKATQLLDVDGIEKIFMLDDHVGCTFAGLASDGRILIDYARSQALQHRLIYDEPISIEYLTKVISDVKQAYTQHGGVRPFGVALIVGGIDKGKQPKLLMTEPSGQFMPYYAVAIGQG 171          
BLAST of DY260441 vs. ExPASy Swiss-Prot
Match: PSMA_METS5 (Proteasome subunit alpha OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=psmA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.067e-22
Identity = 73/233 (31.33%), Postives = 116/233 (49.79%), Query Frame = 2
Query:   89 GYDLSVTTFSPDGRVFQIEYAAKAVDNSG*VXXXXXXXXXXXXXXXXXXXXXXARRTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGTAIGKGRPAAKTEIGKFEAFRNDLPNKGFIELPKNHLRRC--PNEA*GKG 781
            GYD ++T FSPDG ++Q++YA +AV                               T +G+K K+ +V+  EK  AS+++   S  ++  +  H G + AGLA+DGR ++  A++ +  +  VY EPI +  L + ++    + T +  +RPFG  +I+GG DR   +L+M EPSG    Y   AIG+G   A   + K   ++ DL  +  I L  N L+    P E  G G
Sbjct:    9 GYDRAITIFSPDGSLYQVDYAFEAVKKGW---------------------------TTLGVKTKNAVVILGEKKKASQLLDVDSIEKVFLLDDHVGCSFAGLASDGRILIDYARNSSLQHRLVYDEPISIDYLTKLISDVKQMYTQHGGVRPFGVALIVGGVDRGVTKLFMTEPSGQFMPYQAVAIGQGGYNATDYLEK--NYKEDLSVEETILLALNALKVTLKPGEKLGPG 212          
BLAST of DY260441 vs. ExPASy Swiss-Prot
Match: PSA5_TRYBB (Proteasome subunit alpha type-5 OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.067e-22
Identity = 69/212 (32.55%), Postives = 99/212 (46.70%), Query Frame = 2
Query:   71 MSSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSG*VXXXXXXXXXXXXXXXXXXXXXXARRTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTL-----------YWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGTAIGKGRPAAKT 673
            M S  T YD  V TFSP+GR+FQIEYA +A+                               T +GI+  D +++  EK + S ++ P S  +I  +  H G  ++G+ AD R +V  A+ EA N+   Y EP+ V+  A      +  C L               RPFG  +++ G D +GPQL+  +PSG   RY   AIG G  AA+T
Sbjct:    1 MFSSKTEYDRGVNTFSPEGRIFQIEYAIEAIKLGS---------------------------TSLGIQTPDAVIIAAEKRVPSTLVDPSSVNKILEIDHHIGTVLSGMVADARILVDHARVEAQNHRFTYDEPMSVESCA------LATCDLSVQFGESGGRKKLMSRPFGVSLLIAGVDENGPQLWQTDPSGTYTRYDAQAIGGGAEAAQT 179          
BLAST of DY260441 vs. ExPASy Swiss-Prot
Match: PSA2_DROME (Proteasome subunit alpha type-2 OS=Drosophila melanogaster GN=Pros25 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.067e-22
Identity = 64/198 (32.32%), Postives = 94/198 (47.47%), Query Frame = 2
Query:   92 YDLSVTTFSPDGRVFQIEYAAKAVDNSG*VXXXXXXXXXXXXXXXXXXXXXXARRTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGTAIGKGRPAAKTEIGK 685
            Y  S+TTFSP G++ Q+EYA  AV                                 +GI   +G+V+  E    S +    S  R+  ++ H GM  +G+  D R +V +A+  A  Y   Y EPIPV +L QRVA+ +   T    +RPFG  +++ G+D D P LY  +PSG  + +  TA+GK     KT + K
Sbjct:    6 YSFSLTTFSPSGKLVQLEYALAAVSGGA---------------------------PSVGIIASNGVVIATENKHKSPLYEQHSVHRVEMIYNHIGMVYSGMGPDYRLLVKQARKIAQTYYLTYKEPIPVSQLVQRVATLMQEYTQSGGVRPFGVSLLICGWDNDRPYLYQSDPSGAYFAWKATAMGKNAVNGKTFLEK 176          
BLAST of DY260441 vs. ExPASy Swiss-Prot
Match: PSA4_PETHY (Proteasome subunit alpha type-4 OS=Petunia hybrida GN=PAC1 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 3.106e-22
Identity = 65/216 (30.09%), Postives = 111/216 (51.39%), Query Frame = 2
Query:   92 YDLSVTTFSPDGRVFQIEYAAKAVDNSG*VXXXXXXXXXXXXXXXXXXXXXXARRTVIGIKCKDGIVMGVEKLIASKMMLPG-SNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRD-GPQLYMIEPSGISYRYFGTAIGKGRPAAKTEIGKFEAFRNDLPNKGFIEL 733
            YD   T FSP+GR++Q+EYA +A+ N+G                           + IGI  KDG+V+  EK + SK++    S+ +++ +  H   AVAG+ +D   ++  A+ +A  Y   Y EP+PV++L Q +       T Y  L PFG   +  G+D++ G QL+M +PSG    +   AIG    AA++ +   + +++D+  +  ++L
Sbjct:    5 YDSRTTIFSPEGRLYQVEYAMEAIGNAG---------------------------SAIGISSKDGVVLVGEKKVTSKLLQTSTSSEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTFSYQEPMPVEQLVQSLCDTKQGYTQYGGLPPFGVSFLFAGWDKNFGFQLFMSDPSGNYAGWKAAAIGANNQAAQSMLK--QDYKDDITREEAVQL 191          
BLAST of DY260441 vs. ExPASy Swiss-Prot
Match: PSA2_RAT (Proteasome subunit alpha type-2 OS=Rattus norvegicus GN=Psma2 PE=1 SV=3)

HSP 1 Score: 106.301 bits (264), Expect = 3.106e-22
Identity = 65/199 (32.66%), Postives = 96/199 (48.24%), Query Frame = 2
Query:   89 GYDLSVTTFSPDGRVFQIEYAAKAVDNSG*VXXXXXXXXXXXXXXXXXXXXXXARRTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGTAIGKGRPAAKTEIGK 685
            GY  S+TTFSP G++ QIEYA  AV                                 +GIK  +G+V+  EK   S +    S  ++  + +H G+  +G+  D R +V RA+  A  Y  VY EPIP  +L QRVAS +   T    +RPFG  +++ G++   P L+  +PSG  + +  TA+GK     KT + K
Sbjct:    5 GYSFSLTTFSPSGKLVQIEYALAAVAGGA---------------------------PSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEK 176          
BLAST of DY260441 vs. ExPASy Swiss-Prot
Match: PSA2_MOUSE (Proteasome subunit alpha type-2 OS=Mus musculus GN=Psma2 PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 3.106e-22
Identity = 65/199 (32.66%), Postives = 96/199 (48.24%), Query Frame = 2
Query:   89 GYDLSVTTFSPDGRVFQIEYAAKAVDNSG*VXXXXXXXXXXXXXXXXXXXXXXARRTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGTAIGKGRPAAKTEIGK 685
            GY  S+TTFSP G++ QIEYA  AV                                 +GIK  +G+V+  EK   S +    S  ++  + +H G+  +G+  D R +V RA+  A  Y  VY EPIP  +L QRVAS +   T    +RPFG  +++ G++   P L+  +PSG  + +  TA+GK     KT + K
Sbjct:    5 GYSFSLTTFSPSGKLVQIEYALAAVAGGA---------------------------PSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEK 176          
The following BLAST results are available for this feature:
BLAST of DY260441 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
PSMA_SULSO3.669e-2332.28Proteasome subunit alpha OS=Sulfolobus solfataricu... [more]
PSA5_YEAST3.669e-2333.97Proteasome component PUP2 OS=Saccharomyces cerevis... [more]
PSA4_SPIOL4.792e-2331.02Proteasome subunit alpha type-4 OS=Spinacia olerac... [more]
PSMA_SULAC1.067e-2232.63Proteasome subunit alpha OS=Sulfolobus acidocaldar... [more]
PSMA_METS51.067e-2231.33Proteasome subunit alpha OS=Metallosphaera sedula ... [more]
PSA5_TRYBB1.067e-2232.55Proteasome subunit alpha type-5 OS=Trypanosoma bru... [more]
PSA2_DROME1.067e-2232.32Proteasome subunit alpha type-2 OS=Drosophila mela... [more]
PSA4_PETHY3.106e-2230.09Proteasome subunit alpha type-4 OS=Petunia hybrida... [more]
PSA2_RAT3.106e-2232.66Proteasome subunit alpha type-2 OS=Rattus norvegic... [more]
PSA2_MOUSE3.106e-2232.66Proteasome subunit alpha type-2 OS=Mus musculus GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YH24FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260441 ID=DY260441; Name=DY260441; organism=Citrus clementina; type=EST; length=1052bp
CGCTTTCTCAGTAGAAGGGAAAGGGAAATCAAATTGACTCAAAAATCGAA
AAAGAAAGAAGAGAGCAAGCATGAGCAGCATAGGCACAGGCTACGATCTG
TCGGTGACCACATTCTCTCCCGACGGTCGCGTTTTCCAGATCGAATACGC
CGCCAAAGCCGTCGACAACAGCGGGTAGGTTAACTCACTCTCTCTTTCGC
TCTTTTTTTTATTCTCCATTCTTAATATCCTTATTTTTTCAATCTTCGCT
CGCAGGACTGTGATTGGAATTAAATGCAAAGATGGCATCGTTATGGGAGT
GGAGAAGCTAATAGCGTCGAAGATGATGTTGCCTGGTTCCAATAGAAGAA
TCCATTCCGTTCATCGTCACTCCGGCATGGCTGTTGCAGGATTAGCAGCA
GATGGGAGACAAATTGTTACCAGGGCCAAGTCTGAAGCTACAAACTATGA
AAGTGTATATGGCGAACCAATTCCTGTTAAAGAACTTGCTCAACGAGTTG
CTAGCTATGTGCATCTATGTACTCTATATTGGTGGCTCAGACCTTTTGGA
TGTGGTGTAATTCTTGGAGGTTATGACAGAGATGGACCGCAATTGTATAT
GATTGAACCTTCTGGTATCTCCTATAGGTATTTTGGAACTGCAATTGGAA
AGGGCAGGCCAGCCGCTAAAACCGAGATTGGAAAATTTGAAGCTTTTCGA
AATGACCTGCCCAACAAGGGGTTCATTGAATTACCCAAGAACCATTTAAG
GAGGTGCCCGAATGAGGCCTAAGGCAAGGGCCTTTGAACTTGGAAATGGA
CCGGGGTCCGTGAAGAATCCAAACCCCCCCCCACCCAAAGGGTACAAAAA
GAACCTTTTTGAAGGGAAAACAAAGGCCAGCCCCCCCCAAACCCCCCTTT
GGAAAAAAAGGGTGGCAAATTATTGGACCCAAAATTCAAAAAATTTTGTT
TTCTACTTTTGCTGCCCCCTTTCAAGGCCCTTCCCCGCAAACAATCTTTC
CCACCAATTTTTCAAAAAAATATAAACAAACAAGGGGGGAACCTCTCCCC
TC
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