DY260692

Overview
NameDY260692
Unique NameDY260692
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1014
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260692 vs. ExPASy Swiss-Prot
Match: HSP11_CHERU (18.3 kDa class I heat shock protein OS=Chenopodium rubrum GN=HSP18 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 9.071e-40
Identity = 87/149 (58.39%), Postives = 102/149 (68.46%), Query Frame = 3
Query:   42 MSLIPSFFGN--RRSSVFDPFSLD-VWDPFRDXXXXXXXXXXXXXXXXXGEASAFVNTRVDWKETPEAHVFKADLPGLXXXXXXXXXXXXXXLQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASMENGVLTVTVP 479
            MSLIP+ + N  RRS++FDPFSLD +WDPF                    E +AF N R+DWKETPEAHVFKADLPG+              L+ISGQR  EKE+K+DTWHRVERSSG F R+FRLPENAK+D++KA MENGVLTVTVP
Sbjct:    1 MSLIPNNWFNTGRRSNIFDPFSLDEIWDPF---FGLPSTLSTVPRSETAAETAAFANARIDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLRISGQRAREKEEKNDTWHRVERSSGQFMRKFRLPENAKVDQVKAGMENGVLTVTVP 146          
BLAST of DY260692 vs. ExPASy Swiss-Prot
Match: HS16B_ORYSJ (16.9 kDa class I heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP16.9B PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 5.880e-39
Identity = 81/136 (59.56%), Postives = 93/136 (68.38%), Query Frame = 3
Query:   72 RRSSVFDPFSLDVWDPFRDXXXXXXXXXXXXXXXXXGEASAFVNTRVDWKETPEAHVFKADLPGLXXXXXXXXXXXXXXLQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASMENGVLTVTVP 479
            RRS+VFDPFSLD+WDPF                    + +AF N R+DWKETPE+HVFKADLPG+              L ISGQR+ EKEDK+D WHRVERSSG F RRFRLPENAK+D++KA MENGVLTVTVP
Sbjct:    5 RRSNVFDPFSLDLWDPFDSVFRSVVPATSD------NDTAAFANARIDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGMENGVLTVTVP 134          
BLAST of DY260692 vs. ExPASy Swiss-Prot
Match: HS16A_ORYSJ (16.9 kDa class I heat shock protein 1 OS=Oryza sativa subsp. japonica GN=HSP16.9A PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 1.310e-38
Identity = 80/136 (58.82%), Postives = 93/136 (68.38%), Query Frame = 3
Query:   72 RRSSVFDPFSLDVWDPFRDXXXXXXXXXXXXXXXXXGEASAFVNTRVDWKETPEAHVFKADLPGLXXXXXXXXXXXXXXLQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASMENGVLTVTVP 479
            RRS+VFDPFSLD+WDPF                    + +AF N R+DWKETPE+HVFKADLPG+              L ISGQR+ EKEDK+D WHRVERSSG F RRFRLPENAK+D++KA +ENGVLTVTVP
Sbjct:    5 RRSNVFDPFSLDLWDPFDSVFRSVVPATSD------NDTAAFANARIDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGLENGVLTVTVP 134          
BLAST of DY260692 vs. ExPASy Swiss-Prot
Match: HS17A_ORYSJ (17.9 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.9A PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 1.109e-37
Identity = 81/141 (57.45%), Postives = 93/141 (65.96%), Query Frame = 3
Query:   72 RRSSVFDPFSLDVWDPFR-----DXXXXXXXXXXXXXXXXXGEASAFVNTRVDWKETPEAHVFKADLPGLXXXXXXXXXXXXXXLQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASMENGVLTVTVP 479
            RRS+VFDPFSLD+WDPF                         E +AF   R+DWKETPEAHVFKAD+PGL              LQISG+RN E+E+K+D WHRVERSSG F RRFRLP+NAK ++IKASMENGVLTVTVP
Sbjct:    5 RRSNVFDPFSLDLWDPFDGFPFGSGGSSSGSIFPSFPRGASSETAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVDDGNILQISGERNKEQEEKTDQWHRVERSSGKFLRRFRLPDNAKPEQIKASMENGVLTVTVP 145          
BLAST of DY260692 vs. ExPASy Swiss-Prot
Match: HS174_ORYSJ (17.4 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.4 PE=2 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 3.226e-37
Identity = 80/136 (58.82%), Postives = 92/136 (67.65%), Query Frame = 3
Query:   72 RRSSVFDPFSLDVWDPFRDXXXXXXXXXXXXXXXXXGEASAFVNTRVDWKETPEAHVFKADLPGLXXXXXXXXXXXXXXLQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASMENGVLTVTVP 479
            RRS+VFDPFSLD+WDPF                    +A+AF   R+DWKETPEAHVFKAD+PGL              LQISG+R  E+E+K+D WHRVERSSG F RRFRLPEN K ++IKASMENGVLTVTVP
Sbjct:    5 RRSNVFDPFSLDLWDPF--DGFPFGSGSGSLFPRANSDAAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGERIKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVP 138          
BLAST of DY260692 vs. ExPASy Swiss-Prot
Match: HS181_ORYSJ (18.1 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 5.503e-37
Identity = 80/141 (56.74%), Postives = 92/141 (65.25%), Query Frame = 3
Query:   72 RRSSVFDPFSLDVWDPFR-----DXXXXXXXXXXXXXXXXXGEASAFVNTRVDWKETPEAHVFKADLPGLXXXXXXXXXXXXXXLQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASMENGVLTVTVP 479
            RRS+VFDPFSLD+WDPF                         E +AF   R+DWKETPEAHVFKAD+PGL              LQISG+R+ E+E+K+D WHRVERSSG F RRFRLPEN K ++IKASMENGVLTVTVP
Sbjct:    5 RRSNVFDPFSLDLWDPFDGFPFGSGSRSSGSIFPSFPRGTSSETAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGERSKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVP 145          
BLAST of DY260692 vs. ExPASy Swiss-Prot
Match: HS16C_ORYSJ (16.9 kDa class I heat shock protein 3 OS=Oryza sativa subsp. japonica GN=HSP16.9C PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 7.188e-37
Identity = 81/136 (59.56%), Postives = 92/136 (67.65%), Query Frame = 3
Query:   72 RRSSVFDPFSLDVWDPFRDXXXXXXXXXXXXXXXXXGEASAFVNTRVDWKETPEAHVFKADLPGLXXXXXXXXXXXXXXLQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASMENGVLTVTVP 479
            RRS+VFDPF+ D WDPF                    + +AF N RVDWKETPE+HVFKADLPG+              L ISGQR+ EKEDK+D WHRVERSSG F RRFRLPENAK+D++KASMENGVLTVTVP
Sbjct:    5 RRSNVFDPFA-DFWDPFDGVFRSLVPATSDR------DTAAFANARVDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKASMENGVLTVTVP 133          
BLAST of DY260692 vs. ExPASy Swiss-Prot
Match: HS177_ORYSJ (17.7 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 6.085e-36
Identity = 78/139 (56.12%), Postives = 90/139 (64.75%), Query Frame = 3
Query:   72 RRSSVFDPFSLDVWDP---FRDXXXXXXXXXXXXXXXXXGEASAFVNTRVDWKETPEAHVFKADLPGLXXXXXXXXXXXXXXLQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASMENGVLTVTVP 479
            RR + FDPFSLD+WDP   F                    +A+AF   R+DWKETPE HVFKAD+PGL              LQISG+R+ E+E+KSD WHRVERSSG F RRFRLPEN K ++IKASMENGVLTVTVP
Sbjct:    5 RRGNAFDPFSLDLWDPVDGFPFGSGGSSSSSGSLFPRANSDAAAFAGARIDWKETPEVHVFKADVPGLKKEEVKVEVDDGNILQISGERSREQEEKSDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVP 143          
BLAST of DY260692 vs. ExPASy Swiss-Prot
Match: HS16A_WHEAT (16.9 kDa class I heat shock protein 1 OS=Triticum aestivum GN=hsp16.9A PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.657e-33
Identity = 76/137 (55.47%), Postives = 90/137 (65.69%), Query Frame = 3
Query:   72 RRSSVFDPFSLDVW-DPFRDXXXXXXXXXXXXXXXXXGEASAFVNTRVDWKETPEAHVFKADLPGLXXXXXXXXXXXXXXLQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASMENGVLTVTVP 479
            RRS+VFDPF+ D+W DPF                    E +AF N RVDWKETPEAHVFK DLPG+              L +SG+R+ EKEDK+D WHRVERSSG F RRFRLPE+AK++ +KA +ENGVLTVTVP
Sbjct:    5 RRSNVFDPFA-DLWADPF-----DTFRSIVPAISGGSSETAAFANARVDWKETPEAHVFKVDLPGVKKEEVKVEVEDGNVLVVSGERSREKEDKNDKWHRVERSSGKFVRRFRLPEDAKVEEVKAGLENGVLTVTVP 135          
BLAST of DY260692 vs. ExPASy Swiss-Prot
Match: HS16B_WHEAT (16.9 kDa class I heat shock protein 2 OS=Triticum aestivum GN=hsp16.9B PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 5.331e-32
Identity = 74/137 (54.01%), Postives = 89/137 (64.96%), Query Frame = 3
Query:   72 RRSSVFDPFSLDVW-DPFRDXXXXXXXXXXXXXXXXXGEASAFVNTRVDWKETPEAHVFKADLPGLXXXXXXXXXXXXXXLQISGQRNIEKEDKSDTWHRVERSSGMFSRRFRLPENAKMDRIKASMENGVLTVTVP 479
            RR++VFDPF+ D+W DPF                    E +AF N R+DWKETPEAHVFKADLPG+              L +SG+R  EKEDK+D WHRVERSSG F RRFRL E+AK++ +KA +ENGVLTVTVP
Sbjct:    5 RRTNVFDPFA-DLWADPF-----DTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVP 135          
The following BLAST results are available for this feature:
BLAST of DY260692 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
HSP11_CHERU9.071e-4058.3918.3 kDa class I heat shock protein OS=Chenopodium... [more]
HS16B_ORYSJ5.880e-3959.5616.9 kDa class I heat shock protein 2 OS=Oryza sat... [more]
HS16A_ORYSJ1.310e-3858.8216.9 kDa class I heat shock protein 1 OS=Oryza sat... [more]
HS17A_ORYSJ1.109e-3757.4517.9 kDa class I heat shock protein OS=Oryza sativ... [more]
HS174_ORYSJ3.226e-3758.8217.4 kDa class I heat shock protein OS=Oryza sativ... [more]
HS181_ORYSJ5.503e-3756.7418.1 kDa class I heat shock protein OS=Oryza sativ... [more]
HS16C_ORYSJ7.188e-3759.5616.9 kDa class I heat shock protein 3 OS=Oryza sat... [more]
HS177_ORYSJ6.085e-3656.1217.7 kDa class I heat shock protein OS=Oryza sativ... [more]
HS16A_WHEAT1.657e-3355.4716.9 kDa class I heat shock protein 1 OS=Triticum ... [more]
HS16B_WHEAT5.331e-3254.0116.9 kDa class I heat shock protein 2 OS=Triticum ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP13YF04FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260692 ID=DY260692; Name=DY260692; organism=Citrus clementina; type=EST; length=1014bp
GGAAAGAGAGAGGGAAAACAAAAAAAGGAAAGATAAGGAAAATGTCGCTG
ATTCCAAGCTTCTTCGGCAACCGACGCAGCAGTGTGTTCGATCCGTTCTC
ACTCGACGTTTGGGATCCATTCAGGGACTTCCCTCTCTCTGCTTCTTCTT
TTCCATCTGCGGTGTCCTCTCAGTTCCCTGGAGAAGCCTCTGCTTTCGTT
AATACCCGCGTGGACTGGAAGGAAACCCCAGAGGCCCACGTGTTCAAGGC
TGATCTTCCGGGGCTAAGGAAAGAGGAGGTGAAGGTCGAGGTTGAGGATG
ACAGGGTGCTTCAGATAAGCGGGCAGAGGAACATTGAGAAGGAAGACAAG
AGCGACACGTGGCATCGCGTGGAGCGTAGCAGTGGCATGTTCTCGAGGAG
GTTCAGGCTGCCGGAGAATGCGAAGATGGACCGCATTAAGGCTTCAATGG
AGAACGGTGTGCTTACTGTTACCGTTCCCTAAAGCGGAAGAAGCCCAGTA
AGCTACTGTTCCGACTATTGAAATTCCCTGGGCTTGACTTATTAATATAT
ATTTACCATAACTGATCGTCTGAATAAATTATAAGGGTTGGTTTGGAGTT
ATGTGACGAGAGAAATATGAAACAAGACCAGAATGTATGATATGATTATG
CCCTAACTCATATACATATACAACTAAATAACTGCATTGCTATCACTACT
AACCGGAATACCATCAATATAACATTTAATGACTCTCTGTTGCTTACAGT
CTATCGCCGATCCCTCTTACCGACAGAACGGCTCAACAACTAATAAGATA
GACTATATCGACCTTAACTAATATGTTTGATGACTATGACTTCTCCATCC
TGCCTACCACACTCATGCCTTGAATAGCGCTTAGTAAATTTATGGACTAA
TGTCGGTACGCGTATCATACATACGAAGACGTAGACTGACCCTATCAACT
CTAACACATTTTGATAAAACCAAAAAAATTATAGCATGCGAAAAATTACG
ATGTTAAATAATTT
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