DY260720

Overview
NameDY260720
Unique NameDY260720
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length997
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260720 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.930e-18
Identity = 48/102 (47.06%), Postives = 60/102 (58.82%), Query Frame = 3
Query:  249 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLKLL 554
            WYG DR  +L        + P YLTGE PGDYG+D  GLS  P+ F++ +  E+IH RWAMLGA G + PE  +K G   G EAVWFK G+ +     L  L
Sbjct:   49 WYGEDRPKYLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYL 146          
BLAST of DY260720 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.930e-18
Identity = 49/102 (48.04%), Postives = 60/102 (58.82%), Query Frame = 3
Query:  249 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLKLL 554
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE   + G   G EA WFK G+ +     L  L
Sbjct:   29 WYGPDRVKYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EASWFKAGSQIFSEGGLDYL 126          
BLAST of DY260720 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.520e-18
Identity = 49/102 (48.04%), Postives = 59/102 (57.84%), Query Frame = 3
Query:  249 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLKLL 554
            WYGPDR  +L        E P YLTGE PGDYG+D   LS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L  L
Sbjct:   51 WYGPDRVKYLGPF---SGEAPSYLTGEFPGDYGWDTAELSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 148          
BLAST of DY260720 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.520e-18
Identity = 48/102 (47.06%), Postives = 59/102 (57.84%), Query Frame = 3
Query:  249 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLKLL 554
            WYGPDR  +L       ++ P YL GE PGDYG+D  GLS  P+ F+K +A E+IH RWAMLGA G I PE   K+      E VWFK G+ +     L  L
Sbjct:   47 WYGPDRVKYLGPF---SAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYL 145          
BLAST of DY260720 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.520e-18
Identity = 49/102 (48.04%), Postives = 60/102 (58.82%), Query Frame = 3
Query:  249 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLKLL 554
            WYGP+R  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L  L
Sbjct:   51 WYGPNRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKGGSQIFSQGGLDYL 148          
BLAST of DY260720 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.520e-18
Identity = 50/102 (49.02%), Postives = 61/102 (59.80%), Query Frame = 3
Query:  249 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLKLL 554
            WYG DR ++L  G L   E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EA WFK G+ +     L  L
Sbjct:   50 WYGSDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAGWFKAGSQIFSDGGLDYL 147          
BLAST of DY260720 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.520e-18
Identity = 50/92 (54.35%), Postives = 58/92 (63.04%), Query Frame = 3
Query:  249 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGA 521
            WYGPDR    P+ L   SE  P YLTGE PGDYG+D   +S  P+ F+K +  E+IH RWAMLGA G + PE   K G   G EAVWFK GA
Sbjct:   50 WYGPDR----PKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGLKFG-EAVWFKAGA 136          
BLAST of DY260720 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 3.292e-18
Identity = 48/91 (52.75%), Postives = 59/91 (64.84%), Query Frame = 3
Query:  249 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGA 521
            WYG DR ++L  G    S  P YL+GE PGDYG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE   K G   G EAVWFK G+
Sbjct:   49 WYGSDRPLYL--GPFSGSP-PSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFG-EAVWFKAGS 135          
BLAST of DY260720 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 3.292e-18
Identity = 48/102 (47.06%), Postives = 61/102 (59.80%), Query Frame = 3
Query:  249 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLKLL 554
            W+GPD   +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE  ++ G   G EAVWFK G+ +     L  L
Sbjct:   12 WHGPDGVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYL 109          
BLAST of DY260720 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 4.299e-18
Identity = 50/102 (49.02%), Postives = 58/102 (56.86%), Query Frame = 3
Query:  249 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLKLL 554
            WYG DR  FL        E P YL GE  GDYG+D  GLS  P+ F++ +  E+IHARWAMLGA G + PE   K G   G EAVWFK GA +     L  L
Sbjct:   52 WYGADRPKFLGPF---SGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFG-EAVWFKAGAQIFSEGGLDYL 149          
The following BLAST results are available for this feature:
BLAST of DY260720 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
CB23_TOBAC1.930e-1847.06Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB21_SOYBN1.930e-1848.04Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB25_PETSP2.520e-1848.04Chlorophyll a-b binding protein 91R, chloroplastic... [more]
CB23_SOLLC2.520e-1847.06Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB23_NICPL2.520e-1848.04Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB21_WHEAT2.520e-1849.02Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_PINTH2.520e-1854.35Chlorophyll a-b binding protein type I, chloroplas... [more]
CB23_POLMU3.292e-1852.75Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB21_PEA3.292e-1847.06Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB2_PHYPA4.299e-1849.02Chlorophyll a-b binding protein, chloroplastic OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP13YG11FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260720 ID=DY260720; Name=DY260720; organism=Citrus clementina; type=EST; length=997bp
GAAGCAGCAGCCTTTACACTCTGAAGATGGCTTCATTGGCAGCATCGTCC
ACTCCTGCTGCCTCCATTGGAGTTAAGGAGATGCTTGGCAACCCTCTCAA
TGTCAGCAGTGCTGTTAGGACTTCAGCTCCAGGTGCATCAAACCCTTCTA
CTTTCAAGCCCGTTGCTCTCTTCTCCAAGAAGAAAGCCGCCCCTCCTGCC
AAGTCTAAGCCCGTCGCCGTCTCCCCCGTTAACGAAGAGCTCGCCAAGTG
GTATGGTCCTGACCGAAGAATTTTCTTGCCCGAGGGTCTCTTGGACAGAT
CTGAGATCCCTGAGTACTTGACCGGAGAAGTTCCCGGAGACTATGGTTAC
GATCCTTTTGGTCTCAGCAAGAAACCAGACGACTTCAGCAAATATCAGGC
ATATGAATTGATTCATGCCAGATGGGCCATGCTTGGTGCTGCTGGTTTCA
TCATTCCTGAAGCCTTTAACAAGTTTGGTGCTAACTGTGGTCCTGAAGCT
GTCTGGTTCAAGACTGGAGCTCTACTTCTTGATGGAAACACATTGAAACT
ACTTCGGAAAGAACATCCCATATCACCTTGTTTTTGCTGTCATTGCTGAC
ATTGCTCTTGTAGGTGGTGCTAAAATTTATCAAATCACAAAGAGGATAGG
AATTAGTATGACAAGAATTCTCTAAAAGTGGGTCTATTATGAACGACTCG
TGAGTAAATATACTATCCCTGATTCACATTACAATAATAAACTATCCTCT
GATATAAAAAAAAGATAATATTTTGTTGTTTATTTAAACAAGCAAAGATT
ATCATAGACAGGATTTATGAAGGATATAAGTCATCATAAAATAAGGTAAA
TTTAGCTAGTAATATAATCAAATCCAACCCTCACCCATAATCAATTCAAT
ACTACATCTATCTATAATACTATTTGATAATTATTATTATTCCTCTCAAG
TTTTTACCTTACATCTTCACATATCTTAAGTCCTTCCTCCTATTTTA
back to top