DY260720

Overview
NameDY260720
Unique NameDY260720
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length997
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY260720 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 9.277e-13
Identity = 44/102 (43.14%), Postives = 54/102 (52.94%), Query Frame = 3 
Query:  249 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLKLL 554
            WYGPDR  +L        E P YLTGE          GLS  P+ F+K +  E+IH+RWAMLGA G + PE   + G   G EAVWFK G+ +     L  L
Sbjct:   48 WYGPDRVKYLGPF---SGEAPSYLTGEF--------HGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 137
[Close]
BLAST of DY260720 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.699e-12
Identity = 32/70 (45.71%), Postives = 45/70 (64.29%), Query Frame = 3 
Query:  309 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTG 518
            P+YLTG + GD G+DP GL++ P++   +   EL++ RWAMLG AG ++PE F K G    PE  W+  G
Sbjct:   64 PDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPE--WYDAG 131
[Close]
BLAST of DY260720 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.340e-11
Identity = 31/70 (44.29%), Postives = 44/70 (62.86%), Query Frame = 3 
Query:  309 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTG 518
            P YLTG +PGD G+DP GL++ P++   +   EL++ RWAMLG AG ++PE F   G    P+  W+  G
Sbjct:   63 PGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPK--WYAAG 130
The following BLAST results are available for this feature:
BLAST of DY260720 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
CB22_SOYBN9.277e-1343.14Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB24_ARATH2.699e-1245.71Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB24_PEA1.340e-1144.29Chlorophyll a-b binding protein P4, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP13YG11FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260720 ID=DY260720; Name=DY260720; organism=Citrus clementina; type=EST; length=997bp
GAAGCAGCAGCCTTTACACTCTGAAGATGGCTTCATTGGCAGCATCGTCC
ACTCCTGCTGCCTCCATTGGAGTTAAGGAGATGCTTGGCAACCCTCTCAA
TGTCAGCAGTGCTGTTAGGACTTCAGCTCCAGGTGCATCAAACCCTTCTA
CTTTCAAGCCCGTTGCTCTCTTCTCCAAGAAGAAAGCCGCCCCTCCTGCC
AAGTCTAAGCCCGTCGCCGTCTCCCCCGTTAACGAAGAGCTCGCCAAGTG
GTATGGTCCTGACCGAAGAATTTTCTTGCCCGAGGGTCTCTTGGACAGAT
CTGAGATCCCTGAGTACTTGACCGGAGAAGTTCCCGGAGACTATGGTTAC
GATCCTTTTGGTCTCAGCAAGAAACCAGACGACTTCAGCAAATATCAGGC
ATATGAATTGATTCATGCCAGATGGGCCATGCTTGGTGCTGCTGGTTTCA
TCATTCCTGAAGCCTTTAACAAGTTTGGTGCTAACTGTGGTCCTGAAGCT
GTCTGGTTCAAGACTGGAGCTCTACTTCTTGATGGAAACACATTGAAACT
ACTTCGGAAAGAACATCCCATATCACCTTGTTTTTGCTGTCATTGCTGAC
ATTGCTCTTGTAGGTGGTGCTAAAATTTATCAAATCACAAAGAGGATAGG
AATTAGTATGACAAGAATTCTCTAAAAGTGGGTCTATTATGAACGACTCG
TGAGTAAATATACTATCCCTGATTCACATTACAATAATAAACTATCCTCT
GATATAAAAAAAAGATAATATTTTGTTGTTTATTTAAACAAGCAAAGATT
ATCATAGACAGGATTTATGAAGGATATAAGTCATCATAAAATAAGGTAAA
TTTAGCTAGTAATATAATCAAATCCAACCCTCACCCATAATCAATTCAAT
ACTACATCTATCTATAATACTATTTGATAATTATTATTATTCCTCTCAAG
TTTTTACCTTACATCTTCACATATCTTAAGTCCTTCCTCCTATTTTA
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