DY260727

Overview
NameDY260727
Unique NameDY260727
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length937
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260727 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.691e-37
Identity = 71/76 (93.42%), Postives = 73/76 (96.05%), Query Frame = 2
Query:  221 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKEGA 448
            PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH  WAMLGALGCVFPELL+RNGVKFGEAVWFK G+
Sbjct:    1 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSRNGVKFGEAVWFKAGS 76          
BLAST of DY260727 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 2.209e-37
Identity = 81/137 (59.12%), Postives = 97/137 (70.80%), Query Frame = 2
Query:   47 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSP-WYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKEGA 448
            MA++ MA +S + V K   L+  G   S      +    +  ++ G+  WYGPDRVKYLGPFS + PSYL GEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGCVFPE+L +  GV+F E VWFK G+
Sbjct:    1 MASTIMAAASRAVVAKTPFLSGQGRAASASPLRDIAAATNGRITMGNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGS 137          
BLAST of DY260727 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 6.427e-37
Identity = 76/134 (56.72%), Postives = 94/134 (70.15%), Query Frame = 2
Query:   50 ATSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKEGA 448
            +++T+  ++ F+G+  N  P  + ++ G         ++   S   WYGPDRVKYLGPFS + PSYL GEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC+FPE+L +   V F E VWFK G+
Sbjct:    9 SSTTVVKATPFLGQTKNANPLRDVVAMGS--------ARFTMSNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGS 134          
BLAST of DY260727 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 2.442e-36
Identity = 73/104 (70.19%), Postives = 85/104 (81.73%), Query Frame = 2
Query:  149 RKTGSKSV---SSGSPWYGPDRVKYLGPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKEGA 448
            +KT +K+    SSG  +YGP+R K+LGP+S    P+YLTGEFPGDYGWDTAGLSADPETF + RELE+IH RWAMLGALGC  PELLA++G KFGEAVWFK GA
Sbjct:   20 KKTAAKAAAPKSSGVEFYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKFGEAVWFKAGA 123          
BLAST of DY260727 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 9.281e-36
Identity = 71/93 (76.34%), Postives = 77/93 (82.80%), Query Frame = 2
Query:  173 SSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKEGA 448
            S+G  WYGPDR K+LGPFS   P+YLTGEFPGDYGWDTAGLSADPETF K RELEVIH RWA+LGALG + PELL+   GVKFGE VWFK GA
Sbjct:   34 SAGIEWYGPDRAKWLGPFSTNTPAYLTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGA 126          
BLAST of DY260727 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.750e-34
Identity = 79/122 (64.75%), Postives = 85/122 (69.67%), Query Frame = 2
Query:   83 VGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKEGA 448
            + K   L P  + L      +M K  +KS  S S      RVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSA PETFAKNRELEVIH R AM  ALGC+FPELL+  G  FGEAVWFK GA
Sbjct:   20 IAKPSKLNPISSTLIVTAGFTMLKHAAKSKVSSSTC--DRRVKYLGPFSGEWPSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQGFGEAVWFKAGA 139          
BLAST of DY260727 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 8.131e-32
Identity = 64/89 (71.91%), Postives = 76/89 (85.39%), Query Frame = 2
Query:  188 WYGPDRVKYLGPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKEGA 448
            +YGPDR K+LGPFS  + P YLTGEFPGDYGWDTAGLSADP+TFA+ RE+E+IH RWA+LGALG + PELL++  GV+FGE VWFK GA
Sbjct:   33 FYGPDRAKFLGPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGA 121          
BLAST of DY260727 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.257e-24
Identity = 61/101 (60.40%), Postives = 71/101 (70.30%), Query Frame = 2
Query:  152 KTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA-RNGVKFGE-AVWFKEGA 448
            K  SKS SS + +YGPD          + P   TGEFPGDYGWDTAGLSADPETF + RELE+IH R  +LGALG V PELLA  +G+KFG+ A+WFK GA
Sbjct:   45 KAVSKSSSSANQFYGPDATSGWD-LQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGA 144          
BLAST of DY260727 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.628e-19
Identity = 54/104 (51.92%), Postives = 61/104 (58.65%), Query Frame = 2
Query:  161 SKSVSSGSP----WYGPDRVKYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKEGA 448
            SK+VS  S     WYGPDR  +L        E P YL GE  GDYG+D  GL   PE FAK +  E+IH RWAMLGA G + PE L + G   G EAVWFK GA
Sbjct:   49 SKAVSETSDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGA 152          
BLAST of DY260727 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.646e-14
Identity = 38/84 (45.24%), Postives = 52/84 (61.90%), Query Frame = 2
Query:  197 PDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKEG 445
            PDR  +   F G  PP +L G  PGD+G+D  GL++DPE+   N++ E++HCRWAMLGA G   PELL + G+      W+  G
Sbjct:   63 PDRPLW---FPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAG 142          
The following BLAST results are available for this feature:
BLAST of DY260727 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
CB22_CUCSA1.691e-3793.42Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB23_HORVU2.209e-3759.12Chlorophyll a-b binding protein of LHCII type III,... [more]
CB23_SOLLC6.427e-3756.72Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB2_CHLRE2.442e-3670.19Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_CHLMO9.281e-3676.34Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_MALDO1.750e-3464.75Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB2_DUNTE8.131e-3271.91Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_DUNSA1.257e-2460.40Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB26_ARATH4.628e-1951.92Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB12_SOLLC7.646e-1445.24Chlorophyll a-b binding protein 7, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP13YG18FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260727 ID=DY260727; Name=DY260727; organism=Citrus clementina; type=EST; length=937bp
CAACACTCGAACACTAGAGCTCACCAACAACTCTGATCATTGTAAAATGG
CAACCTCGACCATGGCTCTCTCCTCATCATTCGTCGGCAAGGCTGTGAAC
CTTGCCCCTTCAGGCAATGAGCTGAGCAATGGTGGCCGCATCTCCATGCG
TAAAACCGGGAGCAAGTCTGTTTCTTCAGGTAGCCCGTGGTACGGCCCGG
ACAGAGTCAAGTACTTGGGTCCATTCTCTGGCGAGCCCCCAAGCTACTTG
ACTGGTGAGTTCCCTGGTGACTACGGTTGGGACACTGCTGGGCTTTCAGC
TGACCCAGAAACCTTTGCCAAGAACCGTGAACTCGAAGTCATCCACTGCA
GATGGGCCATGTTGGGAGCTCTTGGATGCGTCTTCCCGGAGCTCTTGGCC
CGCAACGGAGTCAAGTTCGGTGAGGCCGTGTGGTTCAAGGAGGGGGCTCC
CAACTAACGCGGACTGCCGGACTTACATACTTGGAAAACCCAATCCTGAT
CCCCTATTACCCATCATGTCCTTCTTGGGCTGACCAGATTTCAAGAAATC
AGCCCTTAAGAGCCAAAATCTGACACACACTTCTCCTAGCTTCAAAATCA
ATATCATATCCACTTTAATTAAAATATAATTACCTAACATAAGAATTACA
ACACTCAAGTCCTATGTTATAAACGATCAAGCAACACAACACTATTATTA
CCACACCACACACTCCTCACCCCTTCTTCTCCTCAATAACACACTATCCA
CTCTTTAATTTCTCTCTCTATTATTAATATCTATATCAAATCCATAAACC
TAACATTCCAACCACCTTTGAATCTTACCACCTATACCATTATGCTTTAC
TCCAGTTAACTGCAACAAAATACATTTAATACATTAAAGCTAACAAAACA
AAGTAATACATAACATTAAATAGAAACTATTTTATAA
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