DY262448
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_ACIAD (Ribonuclease 3 OS=Acinetobacter sp. (strain ADP1) GN=rnc PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 1.134e-14 Identity = 68/238 (28.57%), Postives = 107/238 (44.96%), Query Frame = 3 Query: 141 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDI-DFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQ------VDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKLAQ 833 +++ I Y FK LL+ ALTH S + +Y+RLEF+GD+ LG+ ++NY++ AYP + G+L+ +RA + E L ++A + + S L G +LAD VE+I AIYVD D +L K ++ + + + +E Q P + L + Q K VDI+ N+ V+G + A+ AA E L L Q Sbjct: 13 LQSRIGYEFKQLELLQLALTHRSVSHKYNYERLEFLGDSLLGMIIANYLYQAYPHENEGRLTRMRATLVRQEALGKIANDLKLSRCLILSTGELKS-------------------GGHHRESILADTVEAIIGAIYVDSNDLNLLKN-IVLKWYIPYLDHIEPTDQLKDPKSRLQEYLQARKKPLPVYEVVDIQGDAPNQHFKVVCLVEGLPRVMGEGSSRRFAEQTAAAEILKLLEQ 230
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_LISMF (Ribonuclease 3 OS=Listeria monocytogenes serotype 4b (strain F2365) GN=rnc PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 1.481e-14 Identity = 68/248 (27.42%), Postives = 113/248 (45.56%), Query Frame = 3 Query: 141 VENIINYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIV-------------TLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKL 827 ++ + ++FK+ LL++A THSSY + +RLEF+GDA L L +SNY+F YP + G ++ +RAA + L A F K+VR K +E A G P +LAD+ ES A+Y+D D K+ ++ P + L+E+ Q+ + V + + + + G N+ A V V+G + S K+ A+ +AA+ A+ +L Sbjct: 7 LQESVGFDFKDVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSNYLFNKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLG------KGEEKA-------------GGRTRPALLADVFESFIGALYLDNGID--KVVTFLERVIFPKIDAGAYLQTVDYKTQLQEIVQRDRDVLIEYDILGETGP-------AHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAAQFAINQL 226
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_LISMC (Ribonuclease 3 OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=rnc PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 1.481e-14 Identity = 68/248 (27.42%), Postives = 113/248 (45.56%), Query Frame = 3 Query: 141 VENIINYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIV-------------TLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKL 827 ++ + ++FK+ LL++A THSSY + +RLEF+GDA L L +SNY+F YP + G ++ +RAA + L A F K+VR K +E A G P +LAD+ ES A+Y+D D K+ ++ P + L+E+ Q+ + V + + + + G N+ A V V+G + S K+ A+ +AA+ A+ +L Sbjct: 7 LQESVGFDFKDVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSNYLFNKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLG------KGEEKA-------------GGRTRPALLADVFESFIGALYLDNGID--KVVTFLERVIFPKIDAGAYLQTVDYKTQLQEIVQRDRDVLIEYDILGETGP-------AHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAAQFAINQL 226
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_DEHSC (Ribonuclease 3 OS=Dehalococcoides sp. (strain CBDB1) GN=rnc PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 1.481e-14 Identity = 70/250 (28.00%), Postives = 117/250 (46.80%), Query Frame = 3 Query: 141 VENIINYNFKNKRLLEEALTHSSYTD------STSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQK--LWMIFRGLLEPIVT----------LEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKLAQS 836 +EN + F+ LLE+AL H+S+ + S S +R+EF+GDA LG+ ++ ++ +P + G L+ R+ + E L RVA+ K++ E VS+ G K P LA E++ AAIY+D D+ + ++ +F+ +E + T L+EL Q +T +++ +G + NR IA VY + A S K+ A+ NAA+ AL + S Sbjct: 7 LENSLGVKFEQPSLLEQALIHTSWVNENPNHSSGSNERMEFLGDAVLGVIFADRLYHDFPDIQEGDLTRFRSLLVRRESLVRVALGINLGKYLYLGR----------GEDVSK--------GRFK-PANLAGAFEAVLAAIYIDKGMDVTREVIFRLFKTEMERVQTLSSNIDYKSRLQELIQAQLQLTPRYRITNFSGPE-------HNRLFIAEVYAEDRVFAEGSGRSKKEAETNAAKVALQQFENS 230
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_DEHE1 (Ribonuclease 3 OS=Dehalococcoides ethenogenes (strain 195) GN=rnc PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 1.481e-14 Identity = 68/252 (26.98%), Postives = 116/252 (46.03%), Query Frame = 3 Query: 141 VENIINYNFKNKRLLEEALTHSSYTD------STSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVA--VKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVD--IDFDLQKLWMIFRGLLEPIVT----------LEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKLAQS 836 +E + F+N LLE+AL H+S+ + S S +R+EF+GDA LG+ ++ ++ +P + G L+ R+ + E L RVA + G Y ++ A + K P LA E++ AAIY+D ID + ++ +F+ +E + T L+EL Q +T +++ +G + N IA VY + +A S K+ A+ +AA+EAL + S Sbjct: 7 LEKSLGVKFENLSLLEQALIHTSWVNENPNHLSGSNERMEFLGDAVLGVIFADRLYHDFPDIQEGDLTRFRSLLVRRESLVRVALGINLGKYLYLGRGEDASKGRFK---------------------PANLAGAFEAVLAAIYLDKGIDATREVIFRLFKTEMERVQTLSSNIDYKSRLQELVQAQFQLTPRYRIIDFSGPE-------HNHLFIAEVYTEDKVLAEGSGRSKKEAETSAAKEALQQFENS 230
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_LACF3 (Ribonuclease 3 OS=Lactobacillus fermentum (strain IFO 3956 / LMG 18251) GN=rnc PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 1.935e-14 Identity = 69/249 (27.71%), Postives = 113/249 (45.38%), Query Frame = 3 Query: 138 YVENIINYNFKNKRLLEEALTHSSYTDSTS------YQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVD-----IDFDLQKL--------WMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKL 827 Y+ +F N LL EA T +SY + Y+R+EF+GDA L L +S Y++ YP+L G+L+ LRAA + + ++ A + F +++R K +E A G+ +L DI ES A+Y+D ++ +Q + W F ++ +L+E Q+ V + + L + G + D V VDG VA+ K+ A++ AA+ AL KL Sbjct: 8 YLAKTYGIHFNNPALLAEAFTQASYVNEHPHENLKYYERIEFLGDAVLQLFVSEYIYRRYPELPQGKLTRLRAAMVCEDSFSKFAKECHFDQYIRLG------KGEEMA-------------GARNRASLLCDIFESFIGALYLDQGRQAVEQFIQTVIFPKLDLGW--FDHAVDAKTSLQEFLQRNGDVAIEYDLLSEGGTENDPVF-------EVEVTVDGKKVATGQGSSKKHAEMEAAKHALEKL 228
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_ACIBY (Ribonuclease 3 OS=Acinetobacter baumannii (strain AYE) GN=rnc PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 1.935e-14 Identity = 69/234 (29.49%), Postives = 101/234 (43.16%), Query Frame = 3 Query: 153 INYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVT-LEELQQQPQPVTLLFKLCQKNGKQ------VDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKLAQ 833 I Y FK LL+ ALTH S + +Y+RLEF+GD+ LG+ ++NY++ AYP + G+L+ +RA + E L ++A + + S L G +LAD VE+I AIY+D DL L I P + +E Q P + L + Q K VDI+ ++ VDG + A+ AA E L L Q Sbjct: 17 IGYQFKQPELLQLALTHRSVSHKYNYERLEFLGDSLLGMIIANYLYHAYPHENEGRLTRMRATLVRQEALGKIATDLQLSRCLILSTGELK-------------------SGGHHRESILADTVEAIIGAIYLD-SSDLNLLKDIVLKWYTPYLDHIEPTDQLKDPKSRLQEYLQARKKPLPVYEVVDIQGDAPHQHFKVECLVDGLSKIHGEGSSRRFAEQAAAAEILKLLEQ 230
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_ACIBT (Ribonuclease 3 OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=rnc PE=3 SV=2) HSP 1 Score: 80.8777 bits (198), Expect = 1.935e-14 Identity = 69/234 (29.49%), Postives = 101/234 (43.16%), Query Frame = 3 Query: 153 INYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVT-LEELQQQPQPVTLLFKLCQKNGKQ------VDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKLAQ 833 I Y FK LL+ ALTH S + +Y+RLEF+GD+ LG+ ++NY++ AYP + G+L+ +RA + E L ++A + + S L G +LAD VE+I AIY+D DL L I P + +E Q P + L + Q K VDI+ ++ VDG + A+ AA E L L Q Sbjct: 17 IGYQFKQPELLQLALTHRSVSHKYNYERLEFLGDSLLGMIIANYLYHAYPHENEGRLTRMRATLVRQEALGKIATDLQLSRCLILSTGELK-------------------SGGHHRESILADTVEAIIGAIYLD-SSDLNLLKDIVLKWYTPYLDHIEPTDQLKDPKSRLQEYLQARKKPLPVYEVVDIQGDAPHQHFKVECLVDGLSKIHGEGSSRRFAEQAAAAEILKLLEQ 230
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_BACA2 (Ribonuclease 3 OS=Bacillus amyloliquefaciens (strain FZB42) GN=rnc PE=3 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 2.527e-14 Identity = 68/242 (28.10%), Postives = 112/242 (46.28%), Query Frame = 3 Query: 153 INYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWM-----------IFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKL 827 I+ +F+N++LL +A THSSY + +RLEF+GDA L L +S ++F YP + G L+ LRAA + L +A + F V L K +E G K P +LAD+ E+ A+Y+D D + ++ F +++ L+E Q+ +L +K+ + G NR+ A V + G + + K+ A+ +AA+EAL K+ Sbjct: 27 ISVHFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISQFLFAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLV------LLGKGEEMT-------------GGRKRPALLADVFEAFIGALYLDQGLDPVQQFLKVYVFPKINDGAFSHVMDFKSQLQEFVQRDGKGSLEYKILNEKGP-------AHNREFEALVSLKGEALGIGNGRSKKEAEQHAAQEALAKM 242
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_ACIBS (Ribonuclease 3 OS=Acinetobacter baumannii (strain SDF) GN=rnc PE=3 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 2.527e-14 Identity = 69/234 (29.49%), Postives = 101/234 (43.16%), Query Frame = 3 Query: 153 INYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVT-LEELQQQPQPVTLLFKLCQKNGKQ------VDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKLAQ 833 I Y FK LL+ ALTH S + +Y+RLEF+GD+ LG+ ++NY++ AYP + G+L+ +RA + E L ++A + + S L G +LAD VE+I AIY+D DL L I P + +E Q P + L + Q K VDI+ ++ VDG + A+ AA E L L Q Sbjct: 17 IGYQFKQPELLQLALTHRSVSHKYNYERLEFLGDSLLGMIIANYLYHAYPHENEGRLTRMRATLVRQEALGKIATDLQLSRCLILSTGELK-------------------SGGHHRESILADTVEAIIGAIYLD-SSDLNLLKDIVLKWYTPYLDHIEPTDQLKDPKSRLQEYLQARKKPLPVYEVVDIQGDAPHQHFKVECLVDGLSKIHGEGASRRFAEQAAAAEILKLLEQ 230 The following BLAST results are available for this feature:
BLAST of DY262448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 214
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Sequences
The
following sequences are available for this feature:
EST sequence >DY262448 ID=DY262448; Name=DY262448; organism=Citrus clementina; type=EST; length=1334bpback to top |