DY262450

Overview
NameDY262450
Unique NameDY262450
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1305
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY262450_ssr220 microsatellite DY262450_ssr220:220..243. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY262450 vs. ExPASy Swiss-Prot
Match: C3H30_ARATH (Zinc finger CCCH domain-containing protein 30 OS=Arabidopsis thaliana GN=At2g41900 PE=1 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 2.598e-40
Identity = 68/105 (64.76%), Postives = 83/105 (79.05%), Query Frame = 2
Query:  419 FRMYEFKIRRCTRSRSHDWTDCPFAHPSEKARRRDPRRYHYSGAVCSEYRRGGGCSLGDDCEFAHGVFECWLHPSRYRTEACKDGKNCKRKVCFFAHSPRQLRIL 733
            FRMY FK+R C+R+ SHDWT+CPF HP E ARRRDPR++HYS   C ++R+G  C  GD CE+AHGVFECWLHP++YRT  CKDG  C R+VCFFAH+P +LR L
Sbjct:  262 FRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGA-CRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTGCARRVCFFAHTPEELRPL 365          
BLAST of DY262450 vs. ExPASy Swiss-Prot
Match: C3H24_ORYSJ (Zinc finger CCCH domain-containing protein 24 OS=Oryza sativa subsp. japonica GN=Os03g0698800 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 1.290e-39
Identity = 69/105 (65.71%), Postives = 83/105 (79.05%), Query Frame = 2
Query:  419 FRMYEFKIRRCTRSRSHDWTDCPFAHPSEKARRRDPRRYHYSGAVCSEYRRGGGCSLGDDCEFAHGVFECWLHPSRYRTEACKDGKNCKRKVCFFAHSPRQLRIL 733
            FRMY FKIR C+R+ SHDWT+CPF HP E ARRRDPR+YHYS   C ++R+G  C  GD CE+AHGVFECWLHP++YRT  CKDG +C R+VCFFAH+  +LR L
Sbjct:  282 FRMYSFKIRPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPDFRKGV-CRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHTTDELRPL 385          
BLAST of DY262450 vs. ExPASy Swiss-Prot
Match: C3H56_ARATH (Zinc finger CCCH domain-containing protein 56 OS=Arabidopsis thaliana GN=At5g12850 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 6.400e-39
Identity = 66/105 (62.86%), Postives = 83/105 (79.05%), Query Frame = 2
Query:  419 FRMYEFKIRRCTRSRSHDWTDCPFAHPSEKARRRDPRRYHYSGAVCSEYRRGGGCSLGDDCEFAHGVFECWLHPSRYRTEACKDGKNCKRKVCFFAHSPRQLRIL 733
            FRM+ FKIR C+R+ SHDWT+CPFAHP E ARRRDPR++HY+   C ++++G  C  GD CE+AHGVFECWLHP++YRT  CKDG  C R+VCFFAH+  +LR L
Sbjct:  258 FRMFSFKIRPCSRAYSHDWTECPFAHPGENARRRDPRKFHYTCVPCPDFKKGS-CKQGDMCEYAHGVFECWLHPAQYRTRLCKDGMGCNRRVCFFAHANEELRPL 361          
BLAST of DY262450 vs. ExPASy Swiss-Prot
Match: C3H54_ARATH (Zinc finger CCCH domain-containing protein 54 OS=Arabidopsis thaliana GN=PEI1 PE=1 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 1.426e-38
Identity = 69/103 (66.99%), Postives = 78/103 (75.73%), Query Frame = 2
Query:  419 FRMYEFKIRRCTRSRSHDWTDCPFAHPSEKARRRDPRRYHYSGAVCSEYRRGGGCSLGDDCEFAHGVFECWLHPSRYRTEACKDGKNCKRKVCFFAHSPRQLR 727
            FRMY +KI+RC R+RSHDWT+CP+AH  EKA RRDPRRY Y    C  +R G  C  GD CEFAHGVFE WLHP+RYRT AC  G  C+RKVCFFAH+P QLR
Sbjct:   53 FRMYAYKIKRCPRTRSHDWTECPYAHRGEKATRRDPRRYTYCAVACPAFRNGA-CHRGDSCEFAHGVFEYWLHPARYRTRACNAGNLCQRKVCFFAHAPEQLR 154          
BLAST of DY262450 vs. ExPASy Swiss-Prot
Match: C3H50_ORYSJ (Zinc finger CCCH domain-containing protein 50 OS=Oryza sativa subsp. japonica GN=Os07g0568300 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 2.432e-38
Identity = 64/106 (60.38%), Postives = 80/106 (75.47%), Query Frame = 2
Query:  419 FRMYEFKIRRCTRSRSHDWTDCPFAHPSEKARRRDPRRYHYSGAVCSEYRRGGGCSLGDDCEFAHGVFECWLHPSRYRTEACKDGKNCKRKVCFFAHSPRQLRILP 736
            FRM+ FK+R C+R+ SHDWT+CPF HP E ARRRDPR++ Y+   C  +RR GGC  GD CEF+HGVFE WLHPS+YRT  CK+G  C R++CFFAH   +LR +P
Sbjct:  235 FRMFAFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKHPYTAVPCPNFRRPGGCPSGDSCEFSHGVFESWLHPSQYRTRLCKEGAACARRICFFAHDEDELRHVP 340          
BLAST of DY262450 vs. ExPASy Swiss-Prot
Match: C3H37_ORYSJ (Zinc finger CCCH domain-containing protein 37 OS=Oryza sativa subsp. japonica GN=Os05g0525900 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 1.334e-36
Identity = 66/105 (62.86%), Postives = 77/105 (73.33%), Query Frame = 2
Query:  419 FRMYEFKIRRCTRSRSHDWTDCPFAHPSEKARRRDPRRYHYSGAVCSEYRR--GGGCSLGDDCEFAHGVFECWLHPSRYRTEACKDGKNCKRKVCFFAHSPRQLR 727
            F MYEFK+RRC R+RSHDWT CP+AHP E ARRRDPRR  Y+G  C ++RR  G  C  G  C FAHG FE WLHPSRYRT  C+ G  C+R+VCFFAH+  +LR
Sbjct:   59 FMMYEFKVRRCARARSHDWTACPYAHPGEAARRRDPRRVAYTGEPCPDFRRRPGAACPRGSTCPFAHGTFELWLHPSRYRTRPCRAGVACRRRVCFFAHTAGELR 163          
BLAST of DY262450 vs. ExPASy Swiss-Prot
Match: C3H29_ARATH (Zinc finger CCCH domain-containing protein 29 OS=Arabidopsis thaliana GN=At2g40140 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.927e-35
Identity = 62/103 (60.19%), Postives = 77/103 (74.76%), Query Frame = 2
Query:  419 FRMYEFKIRRCTRSRSHDWTDCPFAHPSEKARRRDPRRYHYSGAVCSEYRRGGGCSLGDDCEFAHGVFECWLHPSRYRTEACKDGKNCKRKVCFFAHSPRQLR 727
            FRM+ FK++ C+R+ SHDWT+CPF HP E ARRRDPR+Y Y+   C E+R+ G C  GD CE+AHGVFE WLHP++YRT  CKD   C R+VCFFAH   +LR
Sbjct:  215 FRMFSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYTCVPCPEFRK-GSCPKGDSCEYAHGVFESWLHPAQYRTRLCKDETGCARRVCFFAHRRDELR 316          
BLAST of DY262450 vs. ExPASy Swiss-Prot
Match: C3H47_ARATH (Zinc finger CCCH domain-containing protein 47 OS=Arabidopsis thaliana GN=At3g55980 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 4.293e-35
Identity = 61/103 (59.22%), Postives = 76/103 (73.79%), Query Frame = 2
Query:  419 FRMYEFKIRRCTRSRSHDWTDCPFAHPSEKARRRDPRRYHYSGAVCSEYRRGGGCSLGDDCEFAHGVFECWLHPSRYRTEACKDGKNCKRKVCFFAHSPRQLR 727
            FRMY FK++ C+R+ SHDWT+C F HP E ARRRDPR+Y Y+   C E+R+G  C  GD CE+AHGVFE WLHP++Y+T  CKD   C RKVCFFAH   ++R
Sbjct:  212 FRMYSFKVKPCSRAYSHDWTECAFVHPGENARRRDPRKYPYTCVPCPEFRKGS-CPKGDSCEYAHGVFESWLHPAQYKTRLCKDETGCARKVCFFAHKREEMR 313          
BLAST of DY262450 vs. ExPASy Swiss-Prot
Match: C3H10_ORYSJ (Zinc finger CCCH domain-containing protein 10 OS=Oryza sativa subsp. japonica GN=Os01g0738400 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 6.199e-34
Identity = 62/107 (57.94%), Postives = 74/107 (69.16%), Query Frame = 2
Query:  419 FRMYEFKIRRCTRSRSHDWTDCPFAHPSEKARRRDPRRYHYSGAVCSEYR--RGGGCSLGDDCEFAHGVFECWLHPSRYRTEACKDGKNCKRKVCFFAHSPRQLRIL 733
            F MYEFK+RRC RSR+H+WT CP+AHP E ARRRDP    Y+G  C ++R      C  G  C FAHG FE WLHPSRYRT  C+ G  C R VCFFAH+ ++LRI+
Sbjct:   45 FMMYEFKVRRCPRSRAHEWTSCPYAHPGEAARRRDPSHVTYTGEPCPDFRVAARAACPRGSGCPFAHGTFETWLHPSRYRTRPCRSGMLCARPVCFFAHNDKELRIV 151          
The following BLAST results are available for this feature:
BLAST of DY262450 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
C3H30_ARATH2.598e-4064.76Zinc finger CCCH domain-containing protein 30 OS=A... [more]
C3H24_ORYSJ1.290e-3965.71Zinc finger CCCH domain-containing protein 24 OS=O... [more]
C3H56_ARATH6.400e-3962.86Zinc finger CCCH domain-containing protein 56 OS=A... [more]
C3H54_ARATH1.426e-3866.99Zinc finger CCCH domain-containing protein 54 OS=A... [more]
C3H50_ORYSJ2.432e-3860.38Zinc finger CCCH domain-containing protein 50 OS=O... [more]
C3H37_ORYSJ1.334e-3662.86Zinc finger CCCH domain-containing protein 37 OS=O... [more]
C3H29_ARATH1.927e-3560.19Zinc finger CCCH domain-containing protein 29 OS=A... [more]
C3H47_ARATH4.293e-3559.22Zinc finger CCCH domain-containing protein 47 OS=A... [more]
C3H10_ORYSJ6.199e-3457.94Zinc finger CCCH domain-containing protein 10 OS=O... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100AA10RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262450 ID=DY262450; Name=DY262450; organism=Citrus clementina; type=EST; length=1305bp
CCAAAATTTATCACTCCAAAATTCATCACACAACAACAACTAATTCTCTC
TCTTCTAGATTCCCATTCATTTTTCATTTTCTTTTTCTAGGCTTCTAGCT
ATGAGCAGTGCTGCTGATCAGCAACATAAGCTTCTTTCACCAAAGAGTAA
TGGTGCAAAACTCTTATTCAAAGACATTGAAGTCCCTCCAAGAAAGCTTC
TCCTTCAAAACAAGAAATCCCACCACCACCACCACCACCACCATCATCAT
CAAGATATCTGCAGCGGTAGCCCTCGCTCTGGCTCTGGCTCTGACTCAGC
CTCTTACTTATTCTATCCCGATCAACAAGAAATGAACATCCTTCATAATA
AATTCTTACCTTTCAACAACACTGACGCCGACTCAGACCCCGACTCCGAT
CCTTACGCATCTGACCATTTCCGTATGTACGAGTTCAAGATCCGCCGCTG
CACCCGCAGCCGCAGCCACGACTGGACAGACTGTCCTTTCGCCCATCCCA
GCGAGAAGGCCCGCCGCCGTGACCCCCGCCGGTATCATTACTCCGGGGCC
GTTTGCTCCGAGTACCGCCGTGGCGGCGGCTGCAGCCTTGGAGATGACTG
TGAGTTTGCTCACGGAGTCTTCGAGTGCTGGCTTCACCCTTCAAGGTACA
GAACTGAAGCCTGCAAAGATGGCAAGAATTGCAAGCGCAAGGTCTGTTTC
TTTGCTCATTCTCCTCGTCAGCTTCGCATTTTGCCAGAAATTTCATCACA
GTACTCCAGCTCTCCCTCCTCTGTTAACAACAACAATCAGAAGATCAGTA
GCCATTGTTGCATGTATTGTCATCACCACTCTGTCAATTCATCCCCAACA
AGCACTTTGTTGGGCAACATGTCTCATTTATCACGTTCCCCTTCTCTTTC
ACCTCCATTGTCGCCGGTGAAACATGGGTTGATCTCGCCGATTTCTAGGT
ACAGTGCTACTACTCCTGTTCCTGCTGATCGCTTAAGCAAGTTTAGCAAC
TCATCAAAAATGGTCATGAGTTACAAGAATGGGCTCATGACCTGATGACT
TCTATGGAAGCCAATCAGTTTAATGAAATTTCATTCTCCAGGTCCCGGGA
CCCTAAAAAAGGGAGTTTAAGGCTGGTCCCTGGGATTGAAGGAAATTTCA
TCCAAGGTTAAAAAATTACCAACACTTTTGTTTTTTTTCCCCTTCTAAAC
CAAACCCCCCCCAACCGGGGGGTACAATCAGGAGAATCCCGGGTTGGCGG
GGCCCCCCCATGGAAAATTATTATTTTTCTATAAAAAAAGGATCCTTTTT
TTTTT
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