DY262465

Overview
NameDY262465
Unique NameDY262465
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1278
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262465 vs. ExPASy Swiss-Prot
Match: HEXA_ENTHI (Beta-hexosaminidase subunit alpha OS=Entamoeba histolytica GN=HEXA PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 1.035e-17
Identity = 64/185 (34.59%), Postives = 94/185 (50.81%), Query Frame = 1
Query:  556 LQLGVDESYTLLVAKNEGLSIIGEATIEANTVYGALRGLETFSQLCSFDYDTKSVLVYKAPWYIQDKPRFAFRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHXHIIDEQSFPLEVLTYPNL-WKGAYSKWERYTG*GCP*KLSVSPE*EGIMLWAKLDVPGHCQSWGT**P----NLWPFSI 1095
            LQ+G DESY L V  N         +I+A TVYGA    ET  QL      +   ++ + P  I D PRF +RGL++D SR+ L   + K+II++++  K NVLH H+ D Q+F  E   YP L  KG Y +    T      +L+      G++++ ++D P H  SW    P    N W + +
Sbjct:  123 LQIGFDESYILEVTTNS-------ISIKAVTVYGARHAFETLLQLIRIS--SNKFVISQLPIKISDAPRFKWRGLMVDPSRNPLSPLMFKRIIDTLASVKANVLHIHLSDAQTFVFESKKYPLLHQKGMYDESFVLTQ-SFLRELAQYGANRGVIVYGEIDTPAHTASWNLGYPGVVANCWDYIV 297          
BLAST of DY262465 vs. ExPASy Swiss-Prot
Match: HEX20_CELFI (Beta-N-acetylhexosaminidase OS=Cellulomonas fimi GN=hex20 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.710e-12
Identity = 58/173 (33.53%), Postives = 95/173 (54.91%), Query Frame = 1
Query:  547 NEDLQLGVDESYTLLVAKNEGLSIIGEATIEANTVYGALRGLETFSQLCSFDYD-TKSVLVYKAPWYIQDKPRFAFRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHXHIIDEQSFPLEVLTYPNLWKGA--YSKWERYTG*GCP*KLS---VSPE*EGIMLWAKLDVPGH 1047
            +EDL  G DE+Y L+V+++          I+A +  G +R + T  Q  S   D T +V   +    ++D PR+A+RGL ID +RH+  VD +K II  +++ KLNVLH H+ D+Q + + + + P+L + +   S      G   P +L+   V+    GI +  ++DVPGH
Sbjct:   74 SEDLPAG-DEAYRLVVSEHR-------VDIDARSAAGLVRAVVTLRQTVSSLGDGTLTVPALR----VEDHPRYAWRGLSIDVARHFFTVDDLKAIIGLLAHYKLNVLHLHLTDDQGWRVHLPSRPHLTRASAGTSVGGGPGGFYNPAQLAEIVVARAARGIRVVPEIDVPGH 234          
BLAST of DY262465 vs. ExPASy Swiss-Prot
Match: HEXA_PORGI (Beta-hexosaminidase OS=Porphyromonas gingivalis GN=nahA PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 8.488e-12
Identity = 41/128 (32.03%), Postives = 73/128 (57.03%), Query Frame = 1
Query:  553 DLQLGVDESYTLLVAKNEGLSIIGEATIEANTVYGALRGLETFSQLCSFDYDTKS--VLVYKAPWY-IQDKPRFAFRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHXHIIDEQSFPLEVLTYPNL 927
            D  L + E   +L +   G+SIIG++       +GA  G++T  QL   + ++ +  +L    P   I+D+P F +RG ++D  RH+L V+ IK+ I+ M+  K+N  H H+ ++Q++ +E+  YP L
Sbjct:  103 DTALPLKEEGYMLRSDKRGVSIIGKSA------HGAFYGMQTLLQLLPAEVESSNEVLLPMTVPGVEIKDEPAFGYRGFMLDVCRHFLSVEDIKKHIDIMAMFKINRFHWHLTEDQAWRIEIKKYPRL 224          
The following BLAST results are available for this feature:
BLAST of DY262465 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
HEXA_ENTHI1.035e-1734.59Beta-hexosaminidase subunit alpha OS=Entamoeba his... [more]
HEX20_CELFI1.710e-1233.53Beta-N-acetylhexosaminidase OS=Cellulomonas fimi G... [more]
HEXA_PORGI8.488e-1232.03Beta-hexosaminidase OS=Porphyromonas gingivalis GN... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100AC02RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262465 ID=DY262465; Name=DY262465; organism=Citrus clementina; type=EST; length=1278bp
ACCGCCATTACGGCTAAAAGAACAGCTTAAAAGAGTAAAAACTGTAACTA
CTTTTTGTCCTGTCTTTATGAGTTCATTCACCTGACTAACTGGTATCTCT
CCTCCACTTTCGCTTCGCTGCAGCTGTTCATCAGATCACTTTGGTTTTCC
AAAGGAATCTCCGTAAACCAAACCACAATGTTGCTCAAATCCCAAGAACA
TCTCTCAGTTCTCAAAGTTATAATCATCACCGCACTTCTCATCATTTTCA
CTTCCTCCCTTTCTGTCTCCACCGACGTGGACGATTCCCTCGCTTACATC
TGGCCTTTGCCAGCGCAATTCACTTCCGGTAACGACACGCTCTCCGTTGA
CCCAGCTCTTTATCTCTCCGTTTCGGGAAAAGGGTCGGGCTCGAAGATTG
TTAAAGAAGCGTTCGAGAGATACAAAGCTATTATTTTCGAGCACGAAGTC
GAAGGGGTTAATTCCCATTCTGTGTTTAATAATTTTAGAAAGAGGAGATC
GTGGGGTTTTGATATTGGAACATTGAAGATTGTTGTTCATTCGGATAATG
AAGACTTGCAGCTTGGTGTTGATGAGAGTTACACTTTGTTGGTGGCTAAG
AATGAGGGGCTGTCAATTATTGGAGAGGCAACAATAGAGGCAAATACAGT
TTATGGTGCTCTGCGAGGATTGGAGACATTCAGCCAATTGTGTTCTTTTG
ACTATGATACTAAATCCGTACTAGTATATAAAGCACCGTGGTACATCCAA
GACAAACCAAGATTTGCATTTCGTGGCCTTCTGATTGATACATCAAGGCA
CTATTTACCAGTAGATGTCATTAAGCAGATAATTGAATCTATGTCATATG
CAAAACTTAATGTCCTTCATTGNCATATCATAGACGAGCAGTCATTTCCT
CTTGAAGTGCTTACATATCCAAATTTGTGGAAGGGCGCATATTCAAAGTG
GGAGCGCTACACGGGTTGAGGATGCCCATGAAAATTGTCGGTTTCGCCAG
AATGAGAAGGCATCATGTTATGGGCGAAATTAGATGTTCCTGGTCATTGC
CAATCATGGGGAACTTGATAACCTAACCTTTGGCCTTTTTCCATCTTGTA
AAAGACCCCTTGGATGTTTCCAAAAATTTTTATTTTTAAAATGATTTTCC
GGCTTTCTTACCAAATTTTAAAAAAATTTTTTCCCCTTTTGAACCTGTTT
TTCCCTTGGGGGGGGGGGAAAAGGAGGGAAAAAACCGGGAGTGGGGCGGG
GAACCCCCTTCCTTCCCCCACGGTTGAG
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