DY262473

Overview
NameDY262473
Unique NameDY262473
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1286
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY262473 vs. ExPASy Swiss-Prot
Match: RHDF2_CANFA (Rhomboid family member 2 OS=Canis familiaris GN=RHBDF2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.446e-11
Identity = 44/139 (31.65%), Postives = 65/139 (46.76%), Query Frame = 1 
Query:  409 LDKM-GALTVAKVVTQHQVWRLLTCIWLHGGVFHVLANMLSLLFIGIRLEQEFGFVRIGFLYVLSGFGGSLTSALFIQEGIXXXXXXXXXXXXXXXXXELFTNWTIYANKLAALLTLIVIISINLAVGILPKVDNFAHI 822
            LDK+ G L         Q +RL   ++LH GV H L +++  + I   LE+  G+ RI  +++LSG  G+L SA+F+                     ELF +W +      A L L  I+      G+LP +DN AHI
Sbjct:  607 LDKVCGLLPFLNPEVPDQFYRLWLSLFLHAGVVHCLVSVVFQMTILRDLEKLAGWHRIAIIFILSGITGNLASAIFLPYRAEVGPAGSQFGLLACLFVELFQSWQLLERPWKAFLNLSAIVLFLFICGLLPWIDNIAHI 745
The following BLAST results are available for this feature:
BLAST of DY262473 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
RHDF2_CANFA9.446e-1131.65Rhomboid family member 2 OS=Canis familiaris GN=RH... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA100AC10RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262473 ID=DY262473; Name=DY262473; organism=Citrus clementina; type=EST; length=1286bp
ACGGTGATGAGTTCGCCTCGGCCTCGGCCTCCACCACCGCTTGAGGCAGC
GAGTTCGCCGGCGGAGACGGAATCTACATCATCAACGACAACGGCAACGA
GGAGAACTTCGGTATCGTCACCGGGAGGAGCATCGTCTTCGTCGTCATCA
CGGCCAGCGTCCACGGCGCCGCCACGTGGAATCCCCGAAACGGCGATGTA
CAGTGATTTTTTGAGCCCGTTTAAACGGCATTTCCCGTGGATGGTCCCGG
GTTTCGTCGTAGCCAACATTGTTTTGTTTGTTATCACAATGTACGAAAAT
AATTGCCCTCAAACTTCTGCTACTGGTTGTTTGGGTGCCAAATTTTTGGG
TAGATTTTCATTTTTGCCCCTGAAAGACAATCCCCTCCTCGGCCCTTCCT
CTCCCGCGTTAGACAAGATGGGTGCTTTAACAGTAGCCAAGGTGGTAACT
CAACACCAAGTGTGGCGTTTGTTGACTTGTATATGGTTGCATGGTGGGGT
TTTCCATGTACTTGCCAATATGTTGAGTCTACTATTCATTGGAATTCGGC
TTGAACAAGAATTTGGATTTGTTCGAATTGGATTCCTCTACGTCCTCTCT
GGTTTTGGTGGGAGTTTGACGTCGGCTCTTTTTATTCAAGAGGGTATATC
TGTCGGTGCCTCTGGAGCTCTTTTTGGTTTACTTGGAGCAATGCTCTCGG
AGCTTTTCACAAATTGGACTATCTATGCAAATAAGTTGGCAGCATTGCTT
ACTCTCATTGTCATCATCAGTATAAATTTGGCAGTGGGAATCCTCCCAAA
AGTGGACAACTTTGCTCATATTGGAGGATTTCTTTCTGGTTTTCTTCTTG
GATTTGTGCTTCTAATCCGGCCTCAGTTTGGATGGATTNTCAGAAAAAAG
CTCCTCCTGGATACATGATAAATTGCGTGAAGTCTAAACATAAGCCATAT
CAGTATGTATTTTGGGTCATCTCTTTGATTCTGCTGGATGCCGGAATTAC
AGTTGGGCTGATTTTGCTGCTAAGAGGAGGTAATTGAACAATCATTGTTC
CTTGGTGCCGTTTTTTGAATTGGGTCCCTCCTCCTTGGTGGAAAGGCAAA
GGCTCAACAATTATCTTGGTCGTTGAAGCCAAAGGGGAAAATCACCCTCA
ATAGGAACTGTACCAAGCAAGGGGAAAAAACCAAAGGCGTAAAAAAGGCC
CGGGGGGAAAAAAAAATTTTTACCCTCCCCCCATTTTTTTGGGCCCCCCC
CTTCTCGTTGGTTTTTGGGGGGGGGTTGTGGAGAGG
back to top