DY262480
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY262480 vs. ExPASy Swiss-Prot
Match: RFCS_METMP (Replication factor C small subunit OS=Methanococcus maripaludis GN=rfcS PE=3 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 1.092e-40 Identity = 68/169 (40.24%), Postives = 102/169 (60.36%), Query Frame = 3 Query: 423 FLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEVTGLV-PDRL 926 FLELN+SDERGI V+R KVK FA RT+P G P+K++ LDE+D++T+ AQ AL F L CNY S+IIPPI SRC+ FRF PL E++++ LK+I E +++ G + + + GD+R+A+ +Q + +IT + +++V PD + Sbjct: 69 FLELNSSDERGIDVIRTKVKDFA-----RTKPIGDA--PFKVIFLDESDALTSDAQNALRRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKDISEKENLNLEKGGI-DAIIYVSEGDMRKAINVLQTAAAVSDEITEEIVYKVASKARPDEI 229 HSP 2 Score: 68.5514 bits (166), Expect = 1.092e-40 Identity = 30/63 (47.62%), Postives = 43/63 (68.25%), Query Frame = 2 Query: 230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLFGDISRD 418 WVEKYRP+T+ ++V E+++ L + +PHLLF G PG GKT+A LA A+ L+GD R+ Sbjct: 5 WVEKYRPETLSEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGDTWRE 67
BLAST of DY262480 vs. ExPASy Swiss-Prot
Match: RFC3_SCHPO (Replication factor C subunit 3 OS=Schizosaccharomyces pombe GN=rfc3 PE=1 SV=2) HSP 1 Score: 109.768 bits (273), Expect = 2.413e-40 Identity = 60/164 (36.59%), Postives = 92/164 (56.10%), Query Frame = 3 Query: 426 LELNASDERGIQVVRDKVKTFA---QLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEVTG 908 +ELNASD+RGI VR+++K FA Q+ S +K++ILDEAD+MT AAQ AL FC+ICNY+++I P I SRC++FRF+PL + + K + + SE ++ + + + GD+R+AL +Q C Y I + ++ G Sbjct: 90 MELNASDDRGIDAVREQIKNFASTRQIFAST----------FKMIILDEADAMTLAAQNALRRVIEKYTKNVRFCIICNYINKISPAIQSRCTRFRFQPLPPKEIEKTVDHVIQSEHCNIDPDAKM-AVLRLSKGDMRKALNILQACHAAYDHIDVSAIYNCVG 242 HSP 2 Score: 78.1814 bits (191), Expect = 2.413e-40 Identity = 31/65 (47.69%), Postives = 48/65 (73.85%), Query Frame = 2 Query: 230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLFGDISRDRV 424 WVEKYRP ++D+V +++ L + ++ +PH+LFYGPPGTGKTS ILA AR+++G R+++ Sbjct: 25 WVEKYRPANLEDVVSHKDIISTLEKFISSNRVPHMLFYGPPGTGKTSTILACARKIYGPNYRNQL 89
BLAST of DY262480 vs. ExPASy Swiss-Prot
Match: RFCS_METM7 (Replication factor C small subunit OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rfcS PE=3 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 4.101e-40 Identity = 72/178 (40.45%), Postives = 104/178 (58.43%), Query Frame = 3 Query: 396 YLETSAETGFLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEVTGLV-PDRL 926 Y ET E FLELN+SDERGI V+R KVK FA RT+P G P+K++ LDE+D++T+ AQ AL F L CNY S+IIPPI SRC+ FRF PL E++++ LKEI E + + G + + + GD+R+A+ +Q + +T + +++V PD + Sbjct: 61 YGETWREN-FLELNSSDERGIDVIRTKVKDFA-----RTKPIGDA--PFKVIFLDESDALTSDAQNALRRTMEKYSDICRFVLSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKEISEKENLTLEKGGI-DAIIYVSEGDMRKAINVLQTAAAVSDTVTEEIVYKVASKARPDEI 229 HSP 2 Score: 67.0106 bits (162), Expect = 4.101e-40 Identity = 29/63 (46.03%), Postives = 43/63 (68.25%), Query Frame = 2 Query: 230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLFGDISRD 418 WVEKYRP+T+ ++V E+++ L + +PHLLF G PG GKT+A LA A+ L+G+ R+ Sbjct: 5 WVEKYRPQTLSEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGETWRE 67
BLAST of DY262480 vs. ExPASy Swiss-Prot
Match: RFCS_METM6 (Replication factor C small subunit OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rfcS PE=3 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 1.182e-39 Identity = 67/169 (39.64%), Postives = 100/169 (59.17%), Query Frame = 3 Query: 423 FLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEVTGLV-PDRL 926 FLELN+SDERGI V+R KVK FA RT+P G P+K++ LDE+D++T+ AQ AL F L CNY S+IIPPI SRC+ FRF PL E++++ LK+I E + + G + + + GD+R+A+ +Q + +T + +++V PD + Sbjct: 69 FLELNSSDERGIDVIRTKVKDFA-----RTKPIGDA--PFKVIFLDESDALTSDAQNALRRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKDISEKETLTLEKGGI-DAIIYVSEGDMRKAINVLQTAAAVSDTVTEEIVYKVASKARPDEI 229 HSP 2 Score: 68.1662 bits (165), Expect = 1.182e-39 Identity = 30/63 (47.62%), Postives = 43/63 (68.25%), Query Frame = 2 Query: 230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLFGDISRD 418 WVEKYRP+T+ ++V E+++ L + +PHLLF G PG GKT+A LA A+ L+GD R+ Sbjct: 5 WVEKYRPETLPEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGDTWRE 67
BLAST of DY262480 vs. ExPASy Swiss-Prot
Match: RFCS_METM5 (Replication factor C small subunit OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rfcS PE=3 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 2.006e-39 Identity = 71/178 (39.89%), Postives = 104/178 (58.43%), Query Frame = 3 Query: 396 YLETSAETGFLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEVTGLV-PDRL 926 Y ET E FLELN+SDERGI V+R KVK FA RT+P G P+K++ LDE+D++T+ AQ AL F L CNY S+IIPPI SRC+ FRF PL E++++ LK+I E + + G + + + GD+R+A+ +Q + +T + +++V PD + Sbjct: 61 YGETWREN-FLELNSSDERGIDVIRTKVKDFA-----RTKPIGDA--PFKVIFLDESDALTSDAQNALRRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKDISEKETLTLEKGGI-DAIIYVSEGDMRKAINVLQTAAAVSDTVTEEIVYKVASKARPDEI 229 HSP 2 Score: 66.6254 bits (161), Expect = 2.006e-39 Identity = 29/63 (46.03%), Postives = 43/63 (68.25%), Query Frame = 2 Query: 230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLFGDISRD 418 WVEKYRP+T+ ++V E+++ L + +PHLLF G PG GKT+A LA A+ L+G+ R+ Sbjct: 5 WVEKYRPETLPEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGETWRE 67
BLAST of DY262480 vs. ExPASy Swiss-Prot
Match: RFCS4_MIMIV (Putative replication factor C small subunit L510 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R510 PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 4.427e-39 Identity = 58/143 (40.56%), Postives = 86/143 (60.14%), Query Frame = 3 Query: 426 LELNASDERGIQVVRDKVKTFAQLTVSRTR-PDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQ 851 +E NASD+RGI VR+K+ A+ V+ + DG P YK++ILDEADSMT+ AQ AL FC ICNY+++I I SRCS FK LS E ++++L +I E +++ ++L +D GD+R+A+ +Q Sbjct: 74 IEFNASDDRGINAVREKITNEAKKYVAEIKLEDGTIIPSYKIIILDEADSMTDEAQDALRVIIEQYSTATRFCFICNYITKITDAIKSRCSSVYFKKLSDECMVEKLNDISLKESMELPK-NILHTIIDVSNGDMRKAIMLLQ 215 HSP 2 Score: 73.9442 bits (180), Expect = 4.427e-39 Identity = 31/65 (47.69%), Postives = 45/65 (69.23%), Query Frame = 2 Query: 230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLFGDISRDRV 424 W+EKYRPK ++DI ++ + + G++ H LFYGPPGTGKTSAILA R++F + ++RV Sbjct: 9 WIEKYRPKKLEDITQSQNLLDLFKNSTKKGEMTHFLFYGPPGTGKTSAILAMGREIFKEHFQNRV 73
BLAST of DY262480 vs. ExPASy Swiss-Prot
Match: RFCS_NATPD (Replication factor C small subunit OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rfcS PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 5.777e-39 Identity = 60/174 (34.48%), Postives = 99/174 (56.90%), Query Frame = 3 Query: 423 FLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEVTGLVPDRLVQEYLS 944 FLELNASD+RGI VVRD++K+FA+ + ++++ LDEAD++T+ AQ+AL F L CNY S+II PI SRC+ FRF PL V ++++ I +EG+++ V + V GD+R+A+ +Q + G + + ++ +T ++E ++ Sbjct: 78 FLELNASDQRGIDVVRDRIKSFARASFGGY--------DHRIIFLDEADALTSDAQSALRRTMEQFSDNTRFILSCNYSSQIIDPIQSRCAVFRFSPLGDAAVDEQIRIIADTEGIELTDDGV-DALVYAADGDMRKAINGLQAAAVMGGTVDEEAVYTITSTARPEEIREMVT 242 HSP 2 Score: 74.7146 bits (182), Expect = 5.777e-39 Identity = 32/63 (50.79%), Postives = 46/63 (73.02%), Query Frame = 2 Query: 230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLFGDISRD 418 W+EKYRP+T+DDIV + + L++ +A DLPHLLF GP G GKT+A A A++++GD R+ Sbjct: 14 WIEKYRPQTLDDIVGHESITERLKQYIAQNDLPHLLFAGPAGVGKTTAATAIAKEVYGDDWRE 76
BLAST of DY262480 vs. ExPASy Swiss-Prot
Match: RFCS_UNCMA (Replication factor C small subunit OS=Uncultured methanogenic archaeon RC-I GN=rfcS PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 7.527e-39 Identity = 63/177 (35.59%), Postives = 100/177 (56.50%), Query Frame = 3 Query: 417 TGFLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEVTGLVPDRLVQEYLSV 947 + F+ELNASDERGI VVR+ +K FA RT P G +K++ LDEAD++T+ AQ+AL F + CNY S+II PI SRC+ +RF PL+ ++ + I +EG+ + ++ + GD+RRA+ A+Q + IT D +++ T + +++ L + Sbjct: 69 SNFIELNASDERGIDVVRNNIKNFA-----RTAPLGEA--KFKIIFLDEADALTSDAQSALRRTMERYAATCRFIISCNYSSKIIEPIQSRCAVYRFGPLNATDITTGITRIAKNEGLKIEKDG-MDALIYVARGDMRRAINALQSAATIAKDITADVIYQTTSTAKPKEIEDMLKL 237 HSP 2 Score: 68.5514 bits (166), Expect = 7.527e-39 Identity = 27/59 (45.76%), Postives = 42/59 (71.19%), Query Frame = 2 Query: 230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLFGD 406 W EKYRP+ ++D++ ++ + L + G+LPHLLF GPPG GKT+ +A AR+L+G+ Sbjct: 7 WTEKYRPRRLEDVIGHQQITRRLISYVKSGNLPHLLFSGPPGVGKTACAVALARELYGE 65
BLAST of DY262480 vs. ExPASy Swiss-Prot
Match: RFCS_METHJ (Replication factor C small subunit OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rfcS PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.278e-38 Identity = 66/164 (40.24%), Postives = 96/164 (58.54%), Query Frame = 3 Query: 414 ETGFLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEVT 905 + F ELNASDERGI VVR+++K FA RT P G +K++ LDEAD++T AQ+AL F L CNY ++II PI SRC+ +RF+PL R+ V + +K I A + + V + V++ GD+R+A+ A+Q L I+ D +F +T Sbjct: 69 QMNFRELNASDERGIDVVRNQIKQFA-----RTSPFGGST--FKILFLDEADALTTDAQSALRRTMETYAQTCRFILSCNYSAKIIDPIQSRCAIYRFRPLGRQAVSEMVKRISADQNLTV-TEEVIDAIFYVAQGDMRKAINALQGAAILGRDISPDMIFAIT 224 HSP 2 Score: 72.4034 bits (176), Expect = 1.278e-38 Identity = 30/59 (50.85%), Postives = 45/59 (76.27%), Query Frame = 2 Query: 230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLFGD 406 W+EKYRP+ ++DI+ Q E+++ LR +A ++PHLLF G GTGKT+A +A AR+ FG+ Sbjct: 8 WIEKYRPRVLEDIIGQQEIIERLRSYVAKREMPHLLFTGNAGTGKTTAAVALAREFFGE 66
BLAST of DY262480 vs. ExPASy Swiss-Prot
Match: RFC5_CAEEL (Probable replication factor C subunit 5 OS=Caenorhabditis elegans GN=F44B9.8 PE=1 SV=3) HSP 1 Score: 104.76 bits (260), Expect = 2.164e-38 Identity = 61/173 (35.26%), Postives = 95/173 (54.91%), Query Frame = 3 Query: 396 YLETSAETGFLELNASDERGIQVVRDKVKTFAQLTVSR--TRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEVTG 908 Y T + LELNASDERGI VVR+ + FAQ + + P+KLVILDEAD+MT AQ AL FC+ICNY++ I+P I SRC++FRF PL ++ ++ RL+ I +E + + + + + GD+R + +Q + ++ + +++ G Sbjct: 87 YSPTKMASMVLELNASDERGIDVVRNTIVNFAQTKGLQAFSTSSNTGTVPFKLVILDEADAMTKDAQNALRRVIEKYTDNVRFCIICNYLASIVPAIQSRCTRFRFAPLDQKLIVPRLEYIVETEQLKM-TPDGKDALLIVSKGDMRTVINTLQSTAMSFDTVSENTVYQCIG 258 HSP 2 Score: 76.6406 bits (187), Expect = 2.164e-38 Identity = 32/57 (56.14%), Postives = 44/57 (77.19%), Query Frame = 2 Query: 230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLF 400 WVEKYRP +D++V ++V+ L + + LPHLLFYGPPGTGKT+ +LAAARQ++ Sbjct: 31 WVEKYRPSKLDELVAHEQIVKTLTKFIENRTLPHLLFYGPPGTGKTTTVLAAARQMY 87 The following BLAST results are available for this feature:
BLAST of DY262480 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 94
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >DY262480 ID=DY262480; Name=DY262480; organism=Citrus clementina; type=EST; length=1280bpback to top |