DY262480
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY262480 vs. ExPASy Swiss-Prot
Match: RFCS_METLZ (Replication factor C small subunit OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rfcS PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 1.060e-37 Identity = 64/174 (36.78%), Postives = 99/174 (56.90%), Query Frame = 3 Query: 423 FLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEVTGLVPDRLVQEYLS 944 F ELNASDERGI VVR+++K FA RT P G +K++ LDEAD++T AQAAL F L CNY S+II PI SRC+ +RF+PL+ E + + + I EG+ + G+ + + GD+R+A+ A+Q + +T + ++ +T + + + L+ Sbjct: 72 FRELNASDERGIDVVRNQIKQFA-----RTAPLGDAT--FKILFLDEADALTQDAQAALRRTMENYAETCRFILSCNYSSKIIDPIQSRCAIYRFRPLTDEAISEEIARIAKKEGITIDEGAYVAITYVSL-GDMRKAINALQGAAIVSDHVTAENIYAITSNAKPQEITDLLA 237 HSP 2 Score: 68.5514 bits (166), Expect = 1.060e-37 Identity = 31/59 (52.54%), Postives = 42/59 (71.19%), Query Frame = 2 Query: 230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLFGD 406 W+EKYRPK + ++V Q +VV+ LR +A LPHLLF G G GKT+ +A AR++FGD Sbjct: 8 WIEKYRPKNLAEVVGQQDVVERLRSYVATKALPHLLFTGSAGVGKTTCAVALAREMFGD 66
BLAST of DY262480 vs. ExPASy Swiss-Prot
Match: RFCS_HALMA (Replication factor C small subunit OS=Haloarcula marismortui GN=rfcS PE=3 SV=2) HSP 1 Score: 108.997 bits (271), Expect = 1.381e-37 Identity = 69/194 (35.57%), Postives = 97/194 (50.00%), Query Frame = 3 Query: 423 FLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQ-----------------------RLYGQITLDGLFEVTGLVPDRLVQE 935 FLELNASDERGI VVRD++K FA+ + Y+++ LDEAD++T+ AQ+AL F L CNY S+II PI SRC+ FRF PL+ + V + ++ I A E +++ L+ V GD+R+A+ +Q R Q LDG F + DRL+ E Sbjct: 80 FLELNASDERGIDVVRDRIKNFARTSFGGVE--------YRIIFLDEADALTSDAQSALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRTIAAEEDIELTEDG-LDALVYAADGDMRKAINGLQAASVSGDTVDESAVYAITSTARPEEIRTMVQSALDGDFTASRATLDRLLTE 264 HSP 2 Score: 69.707 bits (169), Expect = 1.381e-37 Identity = 30/63 (47.62%), Postives = 44/63 (69.84%), Query Frame = 2 Query: 230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLFGDISRD 418 W+EKYRP+T+DD++ +V L+ ++ DL H+LF GP GTGKT+ A AR+L+GD R+ Sbjct: 16 WIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYGDDWRE 78
BLAST of DY262480 vs. ExPASy Swiss-Prot
Match: RFCS_HALSA (Replication factor C small subunit OS=Halobacterium salinarium GN=rfcS PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 3.054e-37 Identity = 62/164 (37.80%), Postives = 92/164 (56.10%), Query Frame = 3 Query: 414 ETGFLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEVT 905 + FLELNASDERGI VVRD++K FA+ + Y+++ LDEAD++T+ AQ+AL F L CNY S+II PI SRC+ FRF L + V L+EI +EG++ + ++ V GD+RRA+ A+Q + + ++ +T Sbjct: 73 QDNFLELNASDERGIDVVRDRIKDFARSSFGGHN--------YRVIFLDEADALTDDAQSALRRTMEQFSNNTRFILSCNYSSKIIDPIQSRCAVFRFAQLGDDAVAAHLREIAETEGLE-HTDDGIDALVYAADGDMRRAINALQAASATGDSVNEETVYAIT 227 HSP 2 Score: 68.5514 bits (166), Expect = 3.054e-37 Identity = 29/63 (46.03%), Postives = 46/63 (73.02%), Query Frame = 2 Query: 230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLFGDISRD 418 WVEKYRP+ ++D+V ++ + L+ + DLPHLLF GP GTGKT++ ++ A++L+GD +D Sbjct: 12 WVEKYRPERLEDVVGHPDITERLQSYVDRDDLPHLLFAGPAGTGKTASSVSIAKELYGDDWQD 74
BLAST of DY262480 vs. ExPASy Swiss-Prot
Match: RFCS_HALS3 (Replication factor C small subunit OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rfcS PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 3.054e-37 Identity = 62/164 (37.80%), Postives = 92/164 (56.10%), Query Frame = 3 Query: 414 ETGFLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEVT 905 + FLELNASDERGI VVRD++K FA+ + Y+++ LDEAD++T+ AQ+AL F L CNY S+II PI SRC+ FRF L + V L+EI +EG++ + ++ V GD+RRA+ A+Q + + ++ +T Sbjct: 73 QDNFLELNASDERGIDVVRDRIKDFARSSFGGHN--------YRVIFLDEADALTDDAQSALRRTMEQFSNNTRFILSCNYSSKIIDPIQSRCAVFRFAQLGDDAVAAHLREIAETEGLE-HTDDGIDALVYAADGDMRRAINALQAASATGDSVNEETVYAIT 227 HSP 2 Score: 68.5514 bits (166), Expect = 3.054e-37 Identity = 29/63 (46.03%), Postives = 46/63 (73.02%), Query Frame = 2 Query: 230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLFGDISRD 418 WVEKYRP+ ++D+V ++ + L+ + DLPHLLF GP GTGKT++ ++ A++L+GD +D Sbjct: 12 WVEKYRPERLEDVVGHPDITERLQSYVDRDDLPHLLFAGPAGTGKTASSVSIAKELYGDDWQD 74
BLAST of DY262480 vs. ExPASy Swiss-Prot
Match: RFCS_METAC (Replication factor C small subunit OS=Methanosarcina acetivorans GN=rfcS PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 6.746e-37 Identity = 61/143 (42.66%), Postives = 87/143 (60.84%), Query Frame = 3 Query: 423 FLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQ 851 F ELNASDERGI +VR+K+K FA +T P G P+K++ LDEAD++T AQ+AL F L CNY S+II PI SRC+ +RF+ LS E + +RL+ I +G+ + G E + GD+R+A+ ++Q Sbjct: 80 FTELNASDERGIDIVRNKIKNFA-----KTAPIGGA--PFKIIFLDEADALTADAQSALRRTMERFSSNCRFILSCNYSSKIIEPIQSRCAVYRFRRLSDEAIKERLEYIAGDQGLSITEGG-YEALIYVAQGDMRKAVNSLQ 214 HSP 2 Score: 67.781 bits (164), Expect = 6.746e-37 Identity = 27/59 (45.76%), Postives = 43/59 (72.88%), Query Frame = 2 Query: 230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLFGD 406 W+EKYRP ++ + Q E ++ L+ +A +LPHLLF GPPG GKT++ ++ AR++FG+ Sbjct: 15 WIEKYRPVRLNQVAGQDETIERLKSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFGE 73
BLAST of DY262480 vs. ExPASy Swiss-Prot
Match: RFCS_THEVO (Replication factor C small subunit OS=Thermoplasma volcanium GN=rfcS PE=3 SV=2) HSP 1 Score: 110.153 bits (274), Expect = 4.298e-36 Identity = 66/181 (36.46%), Postives = 99/181 (54.70%), Query Frame = 3 Query: 408 SAETGFLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPP--YKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEVTGLVPDRLVQEYLS 944 S + F+E+NAS+E GI V+R+K+K A++ RP P +K++ LDEAD +T AQAAL F CNY S+IIPPI SR RF+P+ E + K+L EI +EG + S +E V+ GGD+R+A+ +Q G+I+ ++E+ G V + +S Sbjct: 64 SWKENFIEMNASNENGIDVIRNKIKDIARI---------RPSNPLGFKILFLDEADQLTAEAQAALRRTMEMYSETTRFVFACNYSSKIIPPIQSRTVVMRFRPVQDEFIKKKLNEIAKNEGFTIDDES-MEAMVEVSGGDMRKAINVLQAVY-TSGEISPKKIYEIIGYASPESVNKLIS 233 HSP 2 Score: 63.5438 bits (153), Expect = 4.298e-36 Identity = 29/59 (49.15%), Postives = 40/59 (67.80%), Query Frame = 2 Query: 230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLFGD 406 W EKYRPK++ +I + E +Q L+ + +LPHLLF G GTGKTS +A A +LFG+ Sbjct: 5 WTEKYRPKSLSEIYGEDENIQKLKSFVEKKELPHLLFAGSVGTGKTSTAIALAIELFGE 63
BLAST of DY262480 vs. ExPASy Swiss-Prot
Match: RFCS_METBF (Replication factor C small subunit OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rfcS PE=3 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 7.287e-36 Identity = 63/143 (44.06%), Postives = 84/143 (58.74%), Query Frame = 3 Query: 423 FLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQ 851 F ELNASDERGI VVR K+K FA +T P G +K++ LDEAD++T+ AQ+AL F L CNY SRII PI SRC+ FRF+ LS E + KRL+ I + + + E V GD+R+A+ ++Q Sbjct: 76 FTELNASDERGIDVVRTKIKNFA-----KTAPMGGA--EFKIIFLDEADALTSDAQSALRRTMERFSNNCRFILSCNYSSRIIEPIQSRCAVFRFRRLSDEAIRKRLEYIAKDQVLSITEDG-YEALVYVSQGDMRKAVNSLQ 210 HSP 2 Score: 69.3218 bits (168), Expect = 7.287e-36 Identity = 28/59 (47.46%), Postives = 43/59 (72.88%), Query Frame = 2 Query: 230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLFGD 406 W+EKYRP +D + Q E ++ L+ +A +LPHLLF GPPG GKT++ ++ AR++FG+ Sbjct: 11 WIEKYRPVRLDQVAGQEETIERLKSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFGE 69
BLAST of DY262480 vs. ExPASy Swiss-Prot
Match: RFCS_METMA (Replication factor C small subunit OS=Methanosarcina mazei GN=rfcS PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 2.098e-35 Identity = 59/143 (41.26%), Postives = 87/143 (60.84%), Query Frame = 3 Query: 423 FLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQ 851 F ELNASDERGI +VR+K+K FA +T P G P+K++ LDEAD++T+ AQ+AL F L CNY S+II PI SRC+ +RF+ LS + + +RL+ I + + + G E + GD+R+A+ ++Q Sbjct: 80 FTELNASDERGIDIVRNKIKNFA-----KTAPMGGA--PFKIIFLDEADALTSDAQSALRRTMEKFSSNCRFILSCNYSSKIIEPIQSRCAVYRFRRLSDKAIRERLEYIAKEQDLSITDGG-YEALIYVAQGDMRKAVNSLQ 214 HSP 2 Score: 66.2402 bits (160), Expect = 2.098e-35 Identity = 27/59 (45.76%), Postives = 42/59 (71.19%), Query Frame = 2 Query: 230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLFGD 406 W+EKYRP ++ + Q E ++ L +A +LPHLLF GPPG GKT++ ++ AR++FG+ Sbjct: 15 WIEKYRPVRLNQVAGQEETIERLMSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFGE 73
BLAST of DY262480 vs. ExPASy Swiss-Prot
Match: RFC2_DROME (Replication factor C subunit 2 OS=Drosophila melanogaster GN=RfC4 PE=1 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 1.335e-34 Identity = 75/181 (41.44%), Postives = 100/181 (55.25%), Query Frame = 3 Query: 399 LETSAETGFLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEVTGLVPDRLVQEYL 941 L S + LELNAS+ERGI VVR+K+K FAQ V T P GR +K+VILDEADSMT AQ AL F L CN +II PI SRC+ RF LS V+ +L E+ E ++ LE V T GD+R+ L +Q + +G IT + +F+V +L++E + Sbjct: 74 LGDSYKEAVLELNASNERGIDVVRNKIKMFAQQKV--TLPRGR----HKIVILDEADSMTEGAQQALRRTMEIYSSTTRFALACNTSEKIIEPIQSRCAMLRFTKLSDAQVLAKLIEVAKWEKLNYTEDG-LEAIVFTAQGDMRQGLNNLQSTAQGFGDITAENVFKVCDEPHPKLLEEMI 247 HSP 2 Score: 54.299 bits (129), Expect = 1.335e-34 Identity = 26/65 (40.00%), Postives = 36/65 (55.38%), Query Frame = 2 Query: 230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLFGDISRDRV 424 W+EKYRP +IV + V L G+ P+++ GPPG GKT+ I AR L GD ++ V Sbjct: 18 WIEKYRPVKFKEIVGNEDTVARLSVFATQGNAPNIIIAGPPGVGKTTTIQCLARILLGDSYKEAV 82
BLAST of DY262480 vs. ExPASy Swiss-Prot
Match: RFCS_THEAC (Replication factor C small subunit OS=Thermoplasma acidophilum GN=rfcS PE=3 SV=2) HSP 1 Score: 103.605 bits (257), Expect = 2.266e-34 Identity = 62/179 (34.64%), Postives = 98/179 (54.75%), Query Frame = 3 Query: 408 SAETGFLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEVTGLVPDRLVQEYLS 944 S + +E+NAS+E GI V+R+K+K A++ S P G +K++ LDEAD +T AQAAL F CNY S+IIPPI SR RF+P+ E + ++L+EI +EG + S + V+ GD+R+A+ +Q G+I+ ++E+ G +Q+ +S Sbjct: 64 SWKENMVEMNASNENGIDVIRNKIKDIARIKPSN--PLG-----FKILFLDEADQLTAEAQAALRRTMEIYSETTRFIFSCNYSSKIIPPIQSRTVVMRFRPVPDEYISRKLQEIAKNEGFQIDEES-MHALVEVSAGDMRKAINVLQAVY-TSGEISPKKIYEIIGYASPEKIQKMIS 233 HSP 2 Score: 64.3142 bits (155), Expect = 2.266e-34 Identity = 29/59 (49.15%), Postives = 40/59 (67.80%), Query Frame = 2 Query: 230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLFGD 406 W EKYRPK++ +I + E +Q L+ + ++PHLLF G GTGKTS +A A +LFGD Sbjct: 5 WTEKYRPKSLSEIYGEDENIQKLKSFVEKKEIPHLLFAGSVGTGKTSTAIALAIELFGD 63 The following BLAST results are available for this feature:
BLAST of DY262480 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 94
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Sequences
The
following sequences are available for this feature:
EST sequence >DY262480 ID=DY262480; Name=DY262480; organism=Citrus clementina; type=EST; length=1280bpback to top |