DY262480

Overview
NameDY262480
Unique NameDY262480
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1280
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262480 vs. ExPASy Swiss-Prot
Match: RFC4_SCHPO (Replication factor C subunit 4 OS=Schizosaccharomyces pombe GN=rfc4 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 2.813e-23
Identity = 72/179 (40.22%), Postives = 101/179 (56.42%), Query Frame = 3
Query:  366 LVLSWRLLGNYLETSAETGFLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEV 902
            L L+  LLG     + + G LELNASDERGI VVR+++K FAQ  V    P GR    +K++ILDEADSMT  AQ AL            F L CN  ++II PI SRC+  R+  L+ + V++RL  IC +E V+  +   L   + T  GD+R+A+  +Q     +G +  + +F V
Sbjct:   72 LCLAHALLG----PAYKEGVLELNASDERGIDVVRNRIKAFAQKKV--ILPPGR----HKIIILDEADSMTAGAQQALRRTMEIYSNTTRFALACNQSNKIIEPIQSRCAILRYSRLTDQQVLQRLLNICKAEKVNY-TDDGLAALIMTAEGDMRQAVNNLQSTVAGFGLVNGENVFRV 239          
BLAST of DY262480 vs. ExPASy Swiss-Prot
Match: RFC2_CHICK (Replication factor C subunit 2 OS=Gallus gallus GN=RFC2 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 3.673e-23
Identity = 76/192 (39.58%), Postives = 105/192 (54.69%), Query Frame = 3
Query:  366 LVLSWRLLGNYLETSAETGFLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEVTGLVPDRLVQEYL 941
            L L+  LLG  L+ +     LELNAS++RGI VVR+K+K FAQ  V  T P GR    +K++ILDEADSMT+ AQ AL            F L CN   +II PI SRC+  R+  L+   ++ RL +I   E V   +   LE  + T  GD+R+AL  +Q     +G I  + +F+V       LV+E +
Sbjct:   92 LCLARALLGPALKDAV----LELNASNDRGIDVVRNKIKMFAQQKV--TLPKGR----HKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDSQILARLLKIVEKEDVPY-TDDGLEAIIFTAQGDMRQALNNLQSTYSGFGFINSENVFKVCDEPHPLLVKEMI 272          
BLAST of DY262480 vs. ExPASy Swiss-Prot
Match: RFC4_YEAST (Replication factor C subunit 4 OS=Saccharomyces cerevisiae GN=RFC4 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 4.798e-23
Identity = 73/190 (38.42%), Postives = 104/190 (54.74%), Query Frame = 3
Query:  372 LSWRLLGNYLETSAETGFLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEVTGLVPDRLVQEYL 941
            L+  LLG     S   G LELNASD+RGI VVR+++K FAQ  +    P G+    +K+VILDEADSMT  AQ AL            F   CN  ++II P+ SRC+  R+  LS E+V+KRL +I   E V   +   LE  + T  GD+R+A+  +Q     +G +  D +F++       +V++ L
Sbjct:   62 LAHELLGR----SYADGVLELNASDDRGIDVVRNQIKHFAQKKLHL--PPGK----HKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEDVLKRLLQIIKLEDVKY-TNDGLEAIIFTAEGDMRQAINNLQSTVAGHGLVNADNVFKIVDSPHPLIVKKML 240          
BLAST of DY262480 vs. ExPASy Swiss-Prot
Match: RFC2_RAT (Replication factor C subunit 2 OS=Rattus norvegicus GN=Rfc2 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 4.798e-23
Identity = 76/192 (39.58%), Postives = 104/192 (54.17%), Query Frame = 3
Query:  366 LVLSWRLLGNYLETSAETGFLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEVTGLVPDRLVQEYL 941
            L L+  LLG  L+ +     LELNAS++RGI VVR+K+K FAQ  V  T P GR    +K++ILDEADSMT+ AQ AL            F L CN   +II PI SRC+  R+  L+   V+ RL  +   E V   +   LE  + T  GD+R+AL  +Q     +G I  + +F+V       LV+E +
Sbjct:   82 LCLARALLGPALKDAV----LELNASNDRGIDVVRNKIKMFAQQKV--TLPKGR----HKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLSRLMNVIEKEKVPY-TDDGLEAIIFTAQGDMRQALNNLQSTFSGFGYINSENVFKVCDEPHPLLVKEMI 262          
BLAST of DY262480 vs. ExPASy Swiss-Prot
Match: RFC2_MOUSE (Replication factor C subunit 2 OS=Mus musculus GN=Rfc2 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 6.266e-23
Identity = 76/192 (39.58%), Postives = 104/192 (54.17%), Query Frame = 3
Query:  366 LVLSWRLLGNYLETSAETGFLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEVTGLVPDRLVQEYL 941
            L L+  LLG  L+ +     LELNAS++RGI VVR+K+K FAQ  V  T P GR    +K++ILDEADSMT+ AQ AL            F L CN   +II PI SRC+  R+  L+   V+ RL  +   E V   +   LE  + T  GD+R+AL  +Q     +G I  + +F+V       LV+E +
Sbjct:   82 LCLARALLGPALKDAV----LELNASNDRGIDVVRNKIKMFAQQKV--TLPKGR----HKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLTRLMNVIEKEKVPY-TDDGLEAIIFTAQGDMRQALNNLQSTFSGFGYINSENVFKVCDEPHPLLVKEMI 262          
BLAST of DY262480 vs. ExPASy Swiss-Prot
Match: RFC2_BOVIN (Replication factor C subunit 2 OS=Bos taurus GN=RFC2 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.069e-22
Identity = 75/192 (39.06%), Postives = 104/192 (54.17%), Query Frame = 3
Query:  366 LVLSWRLLGNYLETSAETGFLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEVTGLVPDRLVQEYL 941
            L L+  LLG  L+ +     LELNAS++RGI VVR+K+K FAQ  V  T P GR    +K++ILDEADSMT+ AQ AL            F L CN   +II PI SRC+  R+  L+   ++ RL  +   E V   +   LE  + T  GD+R+AL  +Q     +G I  + +F+V       LV+E +
Sbjct:   85 LCLARALLGPALKDAV----LELNASNDRGIDVVRNKIKMFAQQKV--TLPKGR----HKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDMQILARLLSVIEKEKVQY-TDDGLEAIIFTAQGDMRQALNNLQSTYSGFGFINSENVFKVCDEPHPLLVKEMI 265          
BLAST of DY262480 vs. ExPASy Swiss-Prot
Match: RFC2_HUMAN (Replication factor C subunit 2 OS=Homo sapiens GN=RFC2 PE=1 SV=3)

HSP 1 Score: 107.842 bits (268), Expect = 1.396e-22
Identity = 75/192 (39.06%), Postives = 104/192 (54.17%), Query Frame = 3
Query:  366 LVLSWRLLGNYLETSAETGFLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEVTGLVPDRLVQEYL 941
            L L+  LLG  L+ +     LELNAS++RGI VVR+K+K FAQ  V  T P GR    +K++ILDEADSMT+ AQ AL            F L CN   +II PI SRC+  R+  L+   ++ RL  +   E V   +   LE  + T  GD+R+AL  +Q     +G I  + +F+V       LV+E +
Sbjct:   87 LCLARALLGPALKDA----MLELNASNDRGIDVVRNKIKMFAQQKV--TLPKGR----HKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPY-TDDGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLVKEMI 267          
BLAST of DY262480 vs. ExPASy Swiss-Prot
Match: RFCS_METKA (Replication factor C small subunit OS=Methanopyrus kandleri GN=rfcS PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 2.633e-21
Identity = 69/184 (37.50%), Postives = 97/184 (52.72%), Query Frame = 3
Query:  390 GNYLETSAETGFLELNASDERGIQVVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQRLYGQITLDGLFEVTGLVPDRLVQEYL 941
            GN +  + E   L L+ SDERGI V+R KVK FA     RTRP G     +K++ LDEAD++T  +Q AL            F L  NY S II PI SRC  F+F  L    + +RL++I  SEGV++ +   L+  V    GD+RRA+  +Q    L  +I  D +F++        V+E +
Sbjct:  372 GNEMFFAGEVPVL-LHNSDERGIDVIRTKVKNFA-----RTRPMGGA--RFKIIFLDEADNLTRDSQQALRRIMEMYSDACRFILAANYSSAIIDPIQSRCVVFKFTKLPESAIKERLRKIAESEGVEI-TEDALDAIVYVSEGDMRRAINVLQAAAALGREIDEDTVFQIAATARPEEVREMI 546          

HSP 2 Score: 84.7297 bits (208), Expect = 1.265e-15
Identity = 40/63 (63.49%), Postives = 49/63 (77.78%), Query Frame = 2
Query:  230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLFGDISRD 418
            WVEKYRPK +DDIVDQ  VV+ L+  +  GD+P+LLF GPPGTGKT+A L  AR+LFG+  RD
Sbjct:   13 WVEKYRPKRLDDIVDQEHVVERLKAYVNRGDMPNLLFAGPPGTGKTTAALCLARELFGEHWRD 75          
BLAST of DY262480 vs. ExPASy Swiss-Prot
Match: RFC3_HUMAN (Replication factor C subunit 3 OS=Homo sapiens GN=RFC3 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 4.370e-21
Identity = 49/156 (31.41%), Postives = 72/156 (46.15%), Query Frame = 3
Query:  399 LETSAETGFLELNASDERGIQ--VVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQ 860
            + T A    LE+N SD       V+++ +KT AQ     T         +K+V+L E D +T  AQ AL              L CN  S++IPPI SRC   R    S E++   L  +C  EG+++ S      A  +C  +LR+AL   + C+
Sbjct:   84 ISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLETNSQR----DFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSC-RNLRKALLMCEACR 234          

HSP 2 Score: 54.6842 bits (130), Expect = 4.370e-21
Identity = 25/58 (43.10%), Postives = 34/58 (58.62%), Query Frame = 2
Query:  230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLFG 403
            WV+KYRP ++  +    E    LR  +  GD PHLL YGP G GK + I+   R+L+G
Sbjct:    4 WVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYG 61          
BLAST of DY262480 vs. ExPASy Swiss-Prot
Match: RFC3_MOUSE (Replication factor C subunit 3 OS=Mus musculus GN=Rfc3 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.370e-21
Identity = 49/156 (31.41%), Postives = 71/156 (45.51%), Query Frame = 3
Query:  399 LETSAETGFLELNASDERGIQ--VVRDKVKTFAQLTVSRTRPDGRPCPPYKLVILDEADSMTNAAQAALXXXXXXXXXXXXFCLICNYVSRIIPPITSRCSKFRFKPLSRENVIKRLKEICASEGVDVGSGSVLEQAVDTCGGDLRRALTAMQCCQ 860
            + T A    LE+N SD       V+++ +KT AQ     T         +K+V+L E D +T  AQ AL              L CN  S++IPPI SRC   R    S E++   L  +C  EG+ + S      A  +C  +LR+AL   + C+
Sbjct:   84 ISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLETSSQR----DFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIEDICSVLSTVCRKEGLALPSTLARRLAEKSC-RNLRKALLMCEACR 234          

HSP 2 Score: 55.4546 bits (132), Expect = 4.370e-21
Identity = 25/58 (43.10%), Postives = 34/58 (58.62%), Query Frame = 2
Query:  230 WVEKYRPKTIDDIVDQGEVVQVLRECLAGGDLPHLLFYGPPGTGKTSAILAAARQLFG 403
            WV+KYRP ++  +    E    LR  +  GD PHLL YGP G GK + I+   R+L+G
Sbjct:    4 WVDKYRPSSLARLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYG 61          
The following BLAST results are available for this feature:
BLAST of DY262480 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
RFC4_SCHPO2.813e-2340.22Replication factor C subunit 4 OS=Schizosaccharomy... [more]
RFC2_CHICK3.673e-2339.58Replication factor C subunit 2 OS=Gallus gallus GN... [more]
RFC4_YEAST4.798e-2338.42Replication factor C subunit 4 OS=Saccharomyces ce... [more]
RFC2_RAT4.798e-2339.58Replication factor C subunit 2 OS=Rattus norvegicu... [more]
RFC2_MOUSE6.266e-2339.58Replication factor C subunit 2 OS=Mus musculus GN=... [more]
RFC2_BOVIN1.069e-2239.06Replication factor C subunit 2 OS=Bos taurus GN=RF... [more]
RFC2_HUMAN1.396e-2239.06Replication factor C subunit 2 OS=Homo sapiens GN=... [more]
RFCS_METKA2.633e-2137.50Replication factor C small subunit OS=Methanopyrus... [more]
RFC3_HUMAN4.370e-2131.41Replication factor C subunit 3 OS=Homo sapiens GN=... [more]
RFC3_MOUSE4.370e-2131.41Replication factor C subunit 3 OS=Mus musculus GN=... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100AD06RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262480 ID=DY262480; Name=DY262480; organism=Citrus clementina; type=EST; length=1280bp
CTGTCAGAAACTGGCGGGTAAAAAATGTACAAAGCAGGCAGCCAGATCTT
ATAAGTCAACAAAATAAATACAAAACAGATGAATAAAAGCTAACTAAAAT
AGCTTGTTATTTAGTTACCTAAAAGCTTTAATAATGCAGGCATTCCTTAA
AACGGGTAAGATATCCAACAATGAAAAACCAGCATCATCAGTTCCGAAAA
CTGGCGGCAAGAAGAAACCACCGGCACCATGGGTAGAGAAATACCGTCCC
AAGACTATAGACGATATAGTAGACCAAGGTGAAGTAGTGCAAGTATTGCG
GGAATGTTTGGCGGGTGGTGACTTGCCGCATCTTCTGTTCTACGGGCCTC
CGGGTACTGGTAAAACTAGTGCTATCCTGGCGGCTGCTCGGCAACTATTT
GGAGACATCAGCAGAGACCGGGTTTTTGGAGCTCAATGCTTCTGATGAAC
GGGGCATACAAGTAGTCAGGGATAAAGTGAAGACATTTGCACAGCTCACA
GTCAGCAGGACACGACCTGATGGCCGACCATGTCCTCCGTATAAGCTGGT
TATTCTGGATGAAGCTGACTCCATGACCAACGCAGCCCAGGCGGCACTGC
GACGTACCATGGAGAAGGAAACCAGGACCACGAGATTCTGTTTAATCTGC
AACTATGTGTCAAGGATCATCCCGCCTATTACTAGCAGATGTTCCAAGTT
TAGATTCAAACCACTTTCAAGAGAAAATGTTATTAAAAGGTTAAAAGAGA
TCTGTGCAAGCGAAGGCGTGGACGTGGGCAGTGGGTCAGTGCTGGAGCAG
GCGGTGGACACGTGCGGCGGGGACCTGCGCCGCGCGCTCACCGCCATGCA
GTGCTGCCAGAGACTCTACGGGCAGATCACTCTGGACGGACTCTTCGAGG
TGACGGGGCTGGTGCCTGACCGGCTGGTGCAAGAGTACCTCAGCGTTAAG
GACTACAGTGAACTTTGAGAGTTTTGTGGATAACTTCCTAATGGAGGCGT
ACTCTGCGGCGGCGCTGCTGGAACAGGCAAGCGCGGCGGCCGTCGGCTCC
TCCCTCTCCACCAACAAAAATGCCCATCCCCGAGAAACTGGCCGTCGGGC
CCACCCGGGTGGCTGAAGGGCGGCCCGAAACTAAGGCAACCCCCCGAACT
TCGGCTGGCCCCATCTCTTGGGCCAACAACCAACCCCCGAATATTTAATA
AAAAAACACCCCTTTTGGGAAATTTTTTCTTATATTTTAATAACTATTAA
AATTTTTTTTTTAAAAATAAAAGTTTTTTT
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