DY262490

Overview
NameDY262490
Unique NameDY262490
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1206
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262490 vs. ExPASy Swiss-Prot
Match: AVP2_ARATH (Pyrophosphate-energized membrane proton pump 2 OS=Arabidopsis thaliana GN=AVPL1 PE=1 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 1.247e-22
Identity = 53/192 (27.60%), Postives = 81/192 (42.19%), Query Frame = 3
Query:  234 EAAIKCAEIQNAISVGATSFLFPQYKYLSVVMGVFSTIIFLFQGSVKGFSTKHEPCTYNTGIMCKPALVNAIFSTIAFLLGALTSTLSGFLGMKITTYANARTTLEARKGVSKAFITAFRARAVMGXXXXXXXXXXXYVSINLFKLYYDDDWEG------LYESITGYDLSGSSMALFGRVGGGIYTKAVDV 791
            E   +  EI +AI  GA  F   QY  +S  M +    + L     +  + + E       +       +A  +  AFLLGAL S ++G++GM ++  AN R +  AR+   +A   A RA                 +  + F ++      G      L   + GY    S +ALF ++GGGIYTK  DV
Sbjct:   94 EGPPEMVEISDAIRDGAEGFFRTQYSTISK-MAILLAFVILCIYLFRSLTPQQEAAGLGRAM-------SAYITVAAFLLGALCSGIAGYVGMWVSVRANVRVSSAARRSAREALQIAVRAGGFSALVVVGMAVIGIAILYSTFYVWLGVGSPGSMNVTDLPLLLVGYGFGASFVALFAQLGGGIYTKGADV 277          

HSP 2 Score: 62.7734 bits (151), Expect = 1.247e-22
Identity = 33/52 (63.46%), Postives = 37/52 (71.15%), Query Frame = 1
Query:  796 ADLVGKVERNIPEDDP*NPAVIADNVGYNVGESLGWGFDLFGSYAVILCSTL 951
            ADLVGKVE+ IPEDDP NPAVIAD VG NVG+    G DLF S A  + S +
Sbjct:  279 ADLVGKVEQGIPEDDPRNPAVIADLVGDNVGDCAARGADLFESIAAEIISAM 330          
BLAST of DY262490 vs. ExPASy Swiss-Prot
Match: HPPA_BRUSU (Pyrophosphate-energized proton pump OS=Brucella suis GN=hppA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.655e-22
Identity = 33/51 (64.71%), Postives = 38/51 (74.51%), Query Frame = 1
Query:  799 DLVGKVERNIPEDDP*NPAVIADNVGYNVGESLGWGFDLFGSYAVILCSTL 951
            DLVGKVE  IPEDDP NPA IADNVG NVG+  G   DLF +YAV + +T+
Sbjct:  197 DLVGKVEAGIPEDDPRNPATIADNVGDNVGDCAGMAADLFETYAVTVVATM 247          

HSP 2 Score: 58.9214 bits (141), Expect = 4.655e-22
Identity = 45/181 (24.86%), Postives = 78/181 (43.09%), Query Frame = 3
Query:  255 EIQNAISVGATSFLFPQYKYLSVVMGVFSTIIFLFQGSVKGFSTKHEPCTYNTGIMCKPALVNAIFSTIAFLLGALTSTLSGFLGMKITTYANARTTLEARKGVSKAFITAFRARAVMG--XXXXXXXXXXXYVSINLFKLYYDDDWEGLYESITGYDLSGSSMALFGRVGGGIYTKAVDV 791
            EI  AI  GA+++L  QY  +++V      ++FL    +   +                       + + FL+GA+ S ++GF+GM ++  AN RT   A   ++     AF++ A+ G             Y  +    L Y      + +S+       S +++F R+GGGI+TK  DV
Sbjct:   41 EIAEAIREGASAYLTRQYSTIAIV----GIVVFLLAWYLLSLN-----------------------AAMGFLIGAVLSGVTGFIGMHVSVRANVRTAQAASLSLAGGLELAFKSGAITGLLVAGLALLGVSVYYFVLTVWLGYAPADRTVIDSLVSLGFGASLISIFARLGGGIFTKGADV 194          
BLAST of DY262490 vs. ExPASy Swiss-Prot
Match: HPPA_BRUME (Pyrophosphate-energized proton pump OS=Brucella melitensis GN=hppA PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 4.655e-22
Identity = 33/51 (64.71%), Postives = 38/51 (74.51%), Query Frame = 1
Query:  799 DLVGKVERNIPEDDP*NPAVIADNVGYNVGESLGWGFDLFGSYAVILCSTL 951
            DLVGKVE  IPEDDP NPA IADNVG NVG+  G   DLF +YAV + +T+
Sbjct:  197 DLVGKVEAGIPEDDPRNPATIADNVGDNVGDCAGMAADLFETYAVTVVATM 247          

HSP 2 Score: 58.9214 bits (141), Expect = 4.655e-22
Identity = 45/181 (24.86%), Postives = 78/181 (43.09%), Query Frame = 3
Query:  255 EIQNAISVGATSFLFPQYKYLSVVMGVFSTIIFLFQGSVKGFSTKHEPCTYNTGIMCKPALVNAIFSTIAFLLGALTSTLSGFLGMKITTYANARTTLEARKGVSKAFITAFRARAVMG--XXXXXXXXXXXYVSINLFKLYYDDDWEGLYESITGYDLSGSSMALFGRVGGGIYTKAVDV 791
            EI  AI  GA+++L  QY  +++V      ++FL    +   +                       + + FL+GA+ S ++GF+GM ++  AN RT   A   ++     AF++ A+ G             Y  +    L Y      + +S+       S +++F R+GGGI+TK  DV
Sbjct:   41 EIAEAIREGASAYLTRQYSTIAIV----GIVVFLLAWYLLSLN-----------------------AAMGFLIGAVLSGVTGFIGMHVSVRANVRTAQAASLSLAGGLELAFKSGAITGLLVAGLALLGVSVYYFVLTVWLGYAPADRTVIDSLVSLGFGASLISIFARLGGGIFTKGADV 194          
BLAST of DY262490 vs. ExPASy Swiss-Prot
Match: HPPA1_RHOPA (Pyrophosphate-energized proton pump OS=Rhodopseudomonas palustris GN=hppA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.657e-22
Identity = 34/56 (60.71%), Postives = 38/56 (67.86%), Query Frame = 1
Query:  799 DLVGKVERNIPEDDP*NPAVIADNVGYNVGESLGWGFDLFGSYAVILCSTLCCIGI 966
            DLVGKVE  IPEDDP NPA IADNVG NVG+  G   DLF +YAV   +T+    I
Sbjct:  193 DLVGKVEAGIPEDDPRNPATIADNVGDNVGDCAGMAADLFETYAVTAVATMVLAAI 248          

HSP 2 Score: 59.3066 bits (142), Expect = 4.657e-22
Identity = 45/185 (24.32%), Postives = 77/185 (41.62%), Query Frame = 3
Query:  255 EIQNAISVGATSFLFPQYKYLSVVMGVFSTIIFLFQGSVKGFSTKHEPCTYNTGIMCKPALVNAIFSTIAFLLGALTSTLSGFLGMKITTYANARTTLEARKGVSKAFITAFRARAVMGXXXXXXXXXXXYVSINLFKLY------YDDDWEGLYESITGYDLSGSSMALFGRVGGGIYTKAVDV 791
            EI  A+  GA ++L  QY  +++V  V   ++  F G                           I   I F +GA+ S  +GF+GM ++  AN RT   A   ++     AF+A A+ G            + + L+ +Y         +   + +++       S +++F R+GGGI+TK  DV
Sbjct:   37 EIAGAVREGAQAYLKRQYMTIAIVGVVIFALLAYFLG---------------------------ILVAIGFAIGAILSGAAGFIGMNVSVRANVRTAQAATTSLAGGLELAFKAGAITG----LLVAGLALLGVTLYFIYLIHFAGLQANSRTVVDALVALGFGASLISIFARLGGGIFTKGADV 190          
BLAST of DY262490 vs. ExPASy Swiss-Prot
Match: HPPA_RHIME (Pyrophosphate-energized proton pump OS=Rhizobium meliloti GN=hppA PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.735e-21
Identity = 35/62 (56.45%), Postives = 40/62 (64.52%), Query Frame = 1
Query:  799 DLVGKVERNIPEDDP*NPAVIADNVGYNVGESLGWGFDLFGSYAVILCSTLCCIGIILQYQP 984
            DLVGKVE  IPEDDP NPA IADNVG NVG+  G   DLF +YAV + +T+    I     P
Sbjct:  193 DLVGKVEAGIPEDDPRNPATIADNVGDNVGDCAGMAADLFETYAVSVVATMVLASIFFAGAP 254          

HSP 2 Score: 56.225 bits (134), Expect = 1.735e-21
Identity = 46/182 (25.27%), Postives = 76/182 (41.76%), Query Frame = 3
Query:  255 EIQNAISVGATSFLFPQYKYLSVV-MGVFSTIIFLFQGSVKGFSTKHEPCTYNTGIMCKPALVNAIFSTIAFLLGALTSTLSGFLGMKITTYANARTTLEARKGVSKAFITAFRARAVMG--XXXXXXXXXXXYVSINLFKLYYDDDWEGLYESITGYDLSGSSMALFGRVGGGIYTKAVDV 791
            EI   I  GA ++L  QY  +++V + VF     L  G+                            + I FL+GA+ S  +GF+GM ++  AN RT   A   ++     AF++ A+ G             Y  I    L ++     + +++       S +++F R+GGGI+TK  DV
Sbjct:   37 EIAGFIREGAQAYLTRQYTTIAIVGVVVFIAAWLLLSGA----------------------------AAIGFLIGAVLSGAAGFIGMHVSVRANVRTAQAASVSLASGLDIAFKSGAITGMLVAGLALLGVSVYYLILTAGLGHEPAAREVIDALVALGFGASLISIFARLGGGIFTKGADV 190          
BLAST of DY262490 vs. ExPASy Swiss-Prot
Match: HPPA_AGRT5 (Pyrophosphate-energized proton pump OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=hppA PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.818e-21
Identity = 35/62 (56.45%), Postives = 40/62 (64.52%), Query Frame = 1
Query:  799 DLVGKVERNIPEDDP*NPAVIADNVGYNVGESLGWGFDLFGSYAVILCSTLCCIGIILQYQP 984
            DLVGKVE  IPEDDP NPA IADNVG NVG+  G   DLF +YAV + +T+    I     P
Sbjct:  195 DLVGKVEAGIPEDDPRNPATIADNVGDNVGDCAGMAADLFETYAVSVVATMVLAAIFFAGTP 256          

HSP 2 Score: 55.0694 bits (131), Expect = 3.818e-21
Identity = 37/123 (30.08%), Postives = 62/123 (50.41%), Query Frame = 3
Query:  435 LVNAIFSTIAFLLGALTSTLSGFLGMKITTYANARTTLEARKGVSKAFITAFRARAVMGXXXXXXXXXXXYVSINLFKLY----YDDDWEGLYESITGYDLSGSSMALFGRVGGGIYTKAVDV 791
            L++AI + I F++GA+ S ++GF+GM ++  AN RT   A   +      AF++ A+ G            VSI  F L     +      + +++       S +++F R+GGGI+TK  DV
Sbjct:   73 LLSAI-AAIGFVIGAVLSGVAGFVGMHVSVRANLRTAQAASHSLGAGLDIAFKSGAITGMLVAGLALLG--VSIYYFVLTSVLGHPPGSRAVIDALVSLGFGASLISIFARLGGGIFTKGADV 192          
BLAST of DY262490 vs. ExPASy Swiss-Prot
Match: HPPA_RHILO (Pyrophosphate-energized proton pump OS=Rhizobium loti GN=hppA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.818e-21
Identity = 33/51 (64.71%), Postives = 38/51 (74.51%), Query Frame = 1
Query:  799 DLVGKVERNIPEDDP*NPAVIADNVGYNVGESLGWGFDLFGSYAVILCSTL 951
            DLVGKVE  IPEDDP NPA IADNVG NVG+  G   DLF +YAV + +T+
Sbjct:  193 DLVGKVEAGIPEDDPRNPATIADNVGDNVGDCAGMAADLFETYAVTVVATM 243          

HSP 2 Score: 55.8398 bits (133), Expect = 3.818e-21
Identity = 34/118 (28.81%), Postives = 57/118 (48.31%), Query Frame = 3
Query:  444 AIFSTIAFLLGALTSTLSGFLGMKITTYANARTTLEARKGVSKAFITAFRARAVMG--XXXXXXXXXXXYVSINLFKLYYDDDWEGLYESITGYDLSGSSMALFGRVGGGIYTKAVDV 791
            +I + I FL+GA+ S  +GF+GM ++  AN RT   A   ++     AF++ A+ G             Y  I    +    +   + +S+       S +++F R+GGGI+TK  DV
Sbjct:   73 SITAAIGFLIGAVLSGAAGFIGMHVSVRANVRTAQAASNSLAAGLDIAFKSGAITGMLVAGLALLGVSIYYLILTGPMGLQPNDRIVIDSLVALGFGASLISIFARLGGGIFTKGADV 190          
BLAST of DY262490 vs. ExPASy Swiss-Prot
Match: HPPA_STRAW (Pyrophosphate-energized proton pump OS=Streptomyces avermitilis GN=hppA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.121e-20
Identity = 35/52 (67.31%), Postives = 38/52 (73.08%), Query Frame = 1
Query:  796 ADLVGKVERNIPEDDP*NPAVIADNVGYNVGESLGWGFDLFGSYAVILCSTL 951
            ADLVGKVE+ IPEDDP N A IADNVG NVG+  G   DLF SYAV L + L
Sbjct:  228 ADLVGKVEQGIPEDDPRNAATIADNVGDNVGDCAGMAADLFESYAVTLVAAL 279          

HSP 2 Score: 52.373 bits (124), Expect = 3.121e-20
Identity = 56/207 (27.05%), Postives = 84/207 (40.58%), Query Frame = 3
Query:  219 GVDSLEAAIKCAEIQNAISVGATSFLFPQYKYLSVVMGVFSTIIFLFQGSVKGFSTKHEPCTYNTGIMCKPA--LVNAIFSTIAFLLGALTSTLSGFLGMKITTYANARTTLEARKGVS--------------KAFITAFRARAVMGXXXXXXXXXXXYVSINLFKLYYDDDWEGLYESITGYDLSGSSMALFGRVGGGIYTKAVDV 791
            G DS++      +I  A+  GA ++L  Q + L    GVF+ ++F                     +M  PA         ++ FL+GAL S  +G+ GM +   +N R    AR+                 KA   AFR   V+G            +  +   L Y  D   + E   G+ L  + +A+F RVGGGI+TKA DV
Sbjct:   56 GTDSMK------KIAAAVQEGANAYLGRQMRTL----GVFAVVVFFL-------------------LMLLPADDWNQRAGRSVFFLIGALFSATTGYTGMWLAVRSNVRVAAAAREATPAEGEPEKDLTAVSHKAMKIAFRTGGVVGMFTVGLGL----LGASCVVLVYAADAPKVLE---GFGLGAALIAMFMRVGGGIFTKAADV 226          
BLAST of DY262490 vs. ExPASy Swiss-Prot
Match: HPPA_STRCO (Pyrophosphate-energized proton pump OS=Streptomyces coelicolor GN=hppA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.932e-20
Identity = 35/52 (67.31%), Postives = 38/52 (73.08%), Query Frame = 1
Query:  796 ADLVGKVERNIPEDDP*NPAVIADNVGYNVGESLGWGFDLFGSYAVILCSTL 951
            ADLVGKVE+ IPEDDP N A IADNVG NVG+  G   DLF SYAV L + L
Sbjct:  221 ADLVGKVEQGIPEDDPRNAATIADNVGDNVGDCAGMAADLFESYAVTLVAAL 272          

HSP 2 Score: 50.8322 bits (120), Expect = 8.932e-20
Identity = 56/207 (27.05%), Postives = 83/207 (40.10%), Query Frame = 3
Query:  219 GVDSLEAAIKCAEIQNAISVGATSFLFPQYKYLSVVMGVFSTIIFLFQGSVKGFSTKHEPCTYNTGIMCKPA--LVNAIFSTIAFLLGALTSTLSGFLGMKITTYANARTTLEARKGVS--------------KAFITAFRARAVMGXXXXXXXXXXXYVSINLFKLYYDDDWEGLYESITGYDLSGSSMALFGRVGGGIYTKAVDV 791
            G DS++      +I  A+  GA ++L  Q + L    GVF+ ++F                     +M  PA         +I FL+GA  S  +G++GM +   +N R    AR+                 KA   AFR   V+G              +    L Y  D   + E   G+ L  + +A+F RVGGGI+TKA DV
Sbjct:   49 GTDSMK------KIAAAVQEGANAYLARQLRTL----GVFAVVVFFL-------------------LMLLPADDWNQRAGRSIFFLIGAAFSAATGYIGMWLAVRSNVRVAAAAREATPAPGEPEKDLALVSHKATKIAFRTGGVVGMFTVGLGLLGACCVV----LVYAADAPKVLE---GFGLGAALIAMFMRVGGGIFTKAADV 219          
BLAST of DY262490 vs. ExPASy Swiss-Prot
Match: HPPA_RHORT (Pyrophosphate-energized proton pump OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=hppA PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 2.710e-12
Identity = 50/123 (40.65%), Postives = 64/123 (52.03%), Query Frame = 1
Query:  616 SLLPIAFWCCMSPSIYSNSIMMMTGRDFMNLLLVMI*VAPQWHSLEELGEVYIQKQLMXEADLVGKVERNIPEDDP*NPAVIADNVGYNVGESLGWGFDLFGSYAVILCSTLCCIGIILQYQP 984
            +LL +AF+  +   I +      TGR  ++ L+ +   A        LG     K     ADLVGKVE  IPEDDP NPAVIADNVG NVG+  G   DLF +YAV + +T+    I     P
Sbjct:  136 ALLSVAFYYILLVGIGA------TGRALIDPLVALGFGASLISIFARLGGGIFTKGADVGADLVGKVEAGIPEDDPRNPAVIADNVGDNVGDCAGMAADLFETYAVTVVATMVLASIFFAGVP 252          
The following BLAST results are available for this feature:
BLAST of DY262490 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
AVP2_ARATH1.247e-2227.60Pyrophosphate-energized membrane proton pump 2 OS=... [more]
HPPA_BRUSU4.655e-2264.71Pyrophosphate-energized proton pump OS=Brucella su... [more]
HPPA_BRUME4.655e-2264.71Pyrophosphate-energized proton pump OS=Brucella me... [more]
HPPA1_RHOPA4.657e-2260.71Pyrophosphate-energized proton pump OS=Rhodopseudo... [more]
HPPA_RHIME1.735e-2156.45Pyrophosphate-energized proton pump OS=Rhizobium m... [more]
HPPA_AGRT53.818e-2156.45Pyrophosphate-energized proton pump OS=Agrobacteri... [more]
HPPA_RHILO3.818e-2164.71Pyrophosphate-energized proton pump OS=Rhizobium l... [more]
HPPA_STRAW3.121e-2067.31Pyrophosphate-energized proton pump OS=Streptomyce... [more]
HPPA_STRCO8.932e-2067.31Pyrophosphate-energized proton pump OS=Streptomyce... [more]
HPPA_RHORT2.710e-1240.65Pyrophosphate-energized proton pump OS=Rhodospiril... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100AE04RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262490 ID=DY262490; Name=DY262490; organism=Citrus clementina; type=EST; length=1206bp
ATTTTCAAGAAACAAAGTGATCATCAATAGTGAGTTCATTTATGGAAATG
GCTTCATGGAGTGAGGGGCATACACAAGTTCTGACACCCGCAGCTGCTTT
TATAGGAATTGGTTTTGCTTTGATTCTGTGGGTATTGGTCTCAAAGGTTA
AGATCTCAAATGGAGCTGGTAGCAATGGCGATGATGATAGGTTGATTGAA
GAAGAAGAGGCAGAGGAGGGTGTTGATAGCCTTGAGGCTGCCATCAAGTG
TGCTGAAATTCAAAATGCCATTTCTGTTGGGGCAACATCATTTTTGTTTC
CACAGTACAAGTACCTCAGTGTGGTCATGGGCGTATTCAGCACCATCATC
TTCCTTTTCCAAGGTTCGGTTAAGGGCTTCAGCACCAAACATGAACCCTG
CACATACAACACAGGGATTATGTGCAAACCAGCTCTTGTAAATGCTATTT
TTAGCACCATTGCTTTCTTGCTCGGAGCCCTTACTTCAACCCTCTCAGGT
TTTCTTGGCATGAAGATCACAACCTATGCAAATGCCAGAACAACTTTAGA
AGCAAGGAAAGGAGTCAGCAAGGCTTTTATTACAGCTTTCCGAGCTCGTG
CAGTGATGGGCTTGCTCCTTGCTGCCAATTGCCTTTTGGTGTTGTATGTC
TCCATCAATTTATTCAAACTCTATTATGATGATGACTGGGAGGGACTTTA
TGAATCTATTACTGGTTATGATTTAAGTGGCTCCTCAATGGCACTCTTTG
GAAGAGTTGGGGGAGGTATATATACAAAAGCAGTTGATGTANGAAGCTGA
CCTTGTAGGAAAAGTTGAGAGAAATATTCCTGAAGACGATCCATGAAACC
CAGCGGTTATTGCTGACAATGTGGGCTACAATGTAGGAGAATCGCTGGGA
TGGGGTTTTGATCTTTTTGGATCATATGCAGTCATCCTGTGCAGCACTCT
ATGTTGCATTGGTATCATCCTTCAATATCAGCCATGTCCTATTCCCTGAT
CATAGCTCAAGGGGAATAGTGGTTTGCATGATTACACGCTTTTTGCTTCT
GACTGGTTTCAAATTAAAATCCCCTTTTGCTTTGGCCATAAAAATCCGTT
CTCCTCGAATTCCGGACCCAAAAACGGCCAAAAATTGGCACCCTTTCTTT
TTGGGTTGTCAAACTGGCCTTGGGGGGGCGGGACTTGGTAAATCCTCCAT
CCCCCC
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