DY262516

Overview
NameDY262516
Unique NameDY262516
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1313
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262516 vs. ExPASy Swiss-Prot
Match: RRP3_SCLS1 (ATP-dependent rRNA helicase rrp3 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=rrp3 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.655e-18
Identity = 64/186 (34.41%), Postives = 98/186 (52.69%), Query Frame = 2
Query:  383 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNET 940
            +G  +  P+Q    +E+I   L  RDL   + TGSGKT ++ALPI+Q+L ++  + L  LV+ PTR+LA Q+   F A+   + +   + VG   +  +   L K+P                      I+VATPGRL+DH+  T+GF+L  L YLV+DE DRLL   +   L  +L++   +  T
Sbjct:   74 LGYKAPTPIQ----RESIPLALQGRDLIGLAETGSGKTAAFALPILQSLLDKP-QPLFGLVLAPTRELAYQISQSFEALGSIIRVKCAVIVGGMDMVPQAIALGKKPH---------------------IIVATPGRLLDHLENTKGFSLRSLKYLVMDEADRLLDLDFGPILDKILKVLPRERRT 233          
BLAST of DY262516 vs. ExPASy Swiss-Prot
Match: RRP3_PHANO (ATP-dependent rRNA helicase RRP3 OS=Phaeosphaeria nodorum GN=RRP3 PE=3 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 1.655e-18
Identity = 60/191 (31.41%), Postives = 97/191 (50.79%), Query Frame = 2
Query:  377 QNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNETAFL 949
            +N+G  +  P+Q     E+I   L  +D+   + TGSGKT ++ LPI+Q L ++  +    L++ PTR+LA Q+     A+   + +     VG   +  +   L KRP                      I+VA+PGRL+DH+  T+GF+L+HL YLV+DE DRLL   +   L  + ++   D+   +L
Sbjct:  131 ENLGYKTATPIQT----ESIPLALAGKDIIGLAETGSGKTAAFVLPILQALLDKP-QAYFGLIMAPTRELAYQISQQVDALGSIINVKCATLVGGMDMVPQAIALSKRPH---------------------IIVASPGRLLDHLENTKGFSLKHLKYLVLDEADRLLDLDFGDSLDKIFKVLPRDDRHTYL 295          
BLAST of DY262516 vs. ExPASy Swiss-Prot
Match: RRP3_NEOFI (ATP-dependent rRNA helicase rrp3 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=rrp3 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.655e-18
Identity = 62/188 (32.98%), Postives = 95/188 (50.53%), Query Frame = 2
Query:  377 QNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNET 940
            + MG  +  P+Q     E+I   L  RDL   + TGSGKT ++ALPI+Q L  +  +    L++ PTR+LA Q+   F ++   + +   + VG   +  +   L K+P                      I+VATPGRL+DH+  T+GF+L  L YLV+DE DRLL   +   L  +L++   +  T
Sbjct:   68 ETMGYKAPTPIQA----ESIPLALQGRDLIGLAETGSGKTAAFALPILQALMEKP-QSFFGLILAPTRELAFQISKSFESLGSTINVRCAVIVGGMDMVSQSIALGKKPH---------------------IIVATPGRLLDHLENTKGFSLRTLKYLVMDEADRLLDMDFGPLLDKILKVLPRERRT 229          
BLAST of DY262516 vs. ExPASy Swiss-Prot
Match: RRP3_COCIM (ATP-dependent rRNA helicase RRP3 OS=Coccidioides immitis GN=RRP3 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.655e-18
Identity = 62/179 (34.64%), Postives = 93/179 (51.96%), Query Frame = 2
Query:  404 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNET 940
            P Q+    E+I   L  RDL   + TGSGKT ++ALPI+Q L ++  + +  LV+ PTR+LA Q+   F A+   + +   + VG   +  +   L K+P                      I+VATPGRL+DH+  T+GF+L  L YLV+DE DRLL   +   L  +L++   +  T
Sbjct:   71 PTQIQA--ESIPLALQGRDLIGLAETGSGKTAAFALPILQALMDKP-QSMFGLVLAPTRELAYQISQQFEALGSLISVRCAVIVGGMDMVSQAIALGKKPH---------------------IIVATPGRLLDHLENTKGFSLRSLKYLVMDEADRLLDLDFGPILDKILKVLPKERRT 225          
BLAST of DY262516 vs. ExPASy Swiss-Prot
Match: DRS1_YARLI (ATP-dependent RNA helicase DRS1 OS=Yarrowia lipolytica GN=DRS1 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.655e-18
Identity = 61/189 (32.28%), Postives = 99/189 (52.38%), Query Frame = 2
Query:  386 GISSL-FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA--VRCLRALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNET 940
            GIS+L +     +   TI   L  +DL   + TGSGKT +Y +P+++ L  ++  V   + +V+ PTR+L++QV DV   +A  V G+  GLAVG  ++  +  EL  RP                     ++++ATPGR +DH+  +  F ++ +  LV+DE DR+L E +Q  L  +L L     +T
Sbjct:  266 GISALGYQAPTPIQSRTIPIALMGKDLVAGAVTGSGKTAAYIIPVLERLLYKSSKVAATKVVVLTPTRELSIQVADVGKKLAQYVSGVRFGLAVGGLNLRVQEQELKTRP---------------------EVVIATPGRFIDHVRNSPSFNVDDVEILVIDEADRMLEEGFQQELTEILTLLPKKRQT 433          
BLAST of DY262516 vs. ExPASy Swiss-Prot
Match: RRP3_BOTFB (ATP-dependent rRNA helicase rrp3 OS=Botryotinia fuckeliana (strain B05.10) GN=rrp3 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.161e-18
Identity = 64/186 (34.41%), Postives = 97/186 (52.15%), Query Frame = 2
Query:  383 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNET 940
            +G  +  P+Q    +E+I   L  RDL   + TGSGKT ++ALPI+Q L ++  + L  LV+ PTR+LA Q+   F A+   + +   + VG   +  +   L K+P                      I+VATPGRL+DH+  T+GF+L  L YLV+DE DRLL   +   L  +L++   +  T
Sbjct:   78 LGYKAPTPIQ----RESIPLALQGRDLIGLAETGSGKTAAFALPILQALLDKP-QPLFGLVLAPTRELAYQISQQFEALGSVIRVKCAVIVGGMDMVPQSIALGKKPH---------------------IIVATPGRLLDHLENTKGFSLRSLKYLVMDEADRLLDLDFGPILDKILKVLPRERRT 237          
BLAST of DY262516 vs. ExPASy Swiss-Prot
Match: DRS1_CANGA (ATP-dependent RNA helicase DRS1 OS=Candida glabrata GN=DRS1 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.161e-18
Identity = 64/190 (33.68%), Postives = 97/190 (51.05%), Query Frame = 2
Query:  380 NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA--VRCLRALVVLPTRDLALQVKDVFAAIAPAVG-LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNET 940
            N+G     P+Q A    TI   L  +D+   + TGSGKT ++ +PI++ L  +   V   R +V+ PTR+LA+QV DV   I   V  L+ GLAVG  ++  +   L  RP                     DI++ATPGR +DHI  +  F ++ +  LV+DE DR+L + +Q  L  ++ L  S  +T
Sbjct:  223 NLGYVKPSPIQSA----TIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLYKPAKVASTRVIVLTPTRELAIQVADVGKKIGQFVSNLTFGLAVGGLNLRQQEQMLKTRP---------------------DIVIATPGRFIDHIRNSASFNVDSVEVLVIDEADRMLEDGFQDELNEIMSLLPSKRQT 387          
BLAST of DY262516 vs. ExPASy Swiss-Prot
Match: DRS1_CANAL (ATP-dependent RNA helicase DRS1 OS=Candida albicans GN=DRS1 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.161e-18
Identity = 59/180 (32.78%), Postives = 96/180 (53.33%), Query Frame = 2
Query:  386 GISSL-FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG-LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 919
            GI+ L F     +   +I   L  +D+   + TGSGKT +Y +PI++ L  +     + +++ PTR+LALQV +    ++  V  L++GLAVG  ++  +  +L  RP                     DI++ATPGRL+DHI  +  F+++ +  LV+DE DR+L E +Q  L  +L L
Sbjct:  144 GIAELKFTKPTPIQSASIPIALLGKDIVAGAQTGSGKTGAYMIPIIERLLYKPSTSTKVIILTPTRELALQVYEFGKKLSHHVNNLNIGLAVGGLNLRQQEEQLKTRP---------------------DIVIATPGRLIDHIRNSPSFSVQDIQVLVIDEADRMLEEGFQDELTEILSL 302          
BLAST of DY262516 vs. ExPASy Swiss-Prot
Match: RRP3_YARLI (ATP-dependent rRNA helicase RRP3 OS=Yarrowia lipolytica GN=RRP3 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 2.822e-18
Identity = 58/180 (32.22%), Postives = 94/180 (52.22%), Query Frame = 2
Query:  401 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNET 940
            F     +  ++I   L  RD+   + TGSGKT ++A+P++Q+L     + L  +V+ PTR+LA Q+ + F A+  A+GL   + VG  ++  +   L K+P                      ++VATPGRL+DH+  T+GF+L  L +LV+DE DRLL   +   L  +L++      T
Sbjct:   84 FTKPTPIQAQSIPYALEGRDIIGLAQTGSGKTAAFAIPVLQSLYENP-QPLYCVVLAPTRELAYQISETFEALGSAMGLRTAVVVGGMNMMTQAVALSKKPH---------------------VIVATPGRLVDHLENTKGFSLRTLKFLVMDEADRLLDMEFGPSLDKILKVIPRQRNT 241          
BLAST of DY262516 vs. ExPASy Swiss-Prot
Match: RRP3_ASPFU (ATP-dependent rRNA helicase rrp3 OS=Aspergillus fumigatus GN=rrp3 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 2.822e-18
Identity = 62/188 (32.98%), Postives = 94/188 (50.00%), Query Frame = 2
Query:  377 QNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNET 940
            + MG  +  P+Q     E+I   L  RDL   + TGSGKT ++ALPI+Q L     +    L++ PTR+LA Q+   F ++   + +   + VG   +  +   L K+P                      I+VATPGRL+DH+  T+GF+L  L YLV+DE DRLL   +   L  +L++   +  T
Sbjct:   68 ETMGYKAPTPIQA----ESIPLALQGRDLIGLAETGSGKTAAFALPILQALMENP-QSFFGLILAPTRELAFQISKSFESLGSTINVRCAVIVGGMDMVSQSIALGKKPH---------------------IIVATPGRLLDHLENTKGFSLRTLKYLVMDEADRLLDMDFGPLLDKILKVLPRERRT 229          
The following BLAST results are available for this feature:
BLAST of DY262516 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 338
Match NameE-valueIdentityDescription
RRP3_SCLS11.655e-1834.41ATP-dependent rRNA helicase rrp3 OS=Sclerotinia sc... [more]
RRP3_PHANO1.655e-1831.41ATP-dependent rRNA helicase RRP3 OS=Phaeosphaeria ... [more]
RRP3_NEOFI1.655e-1832.98ATP-dependent rRNA helicase rrp3 OS=Neosartorya fi... [more]
RRP3_COCIM1.655e-1834.64ATP-dependent rRNA helicase RRP3 OS=Coccidioides i... [more]
DRS1_YARLI1.655e-1832.28ATP-dependent RNA helicase DRS1 OS=Yarrowia lipoly... [more]
RRP3_BOTFB2.161e-1834.41ATP-dependent rRNA helicase rrp3 OS=Botryotinia fu... [more]
DRS1_CANGA2.161e-1833.68ATP-dependent RNA helicase DRS1 OS=Candida glabrat... [more]
DRS1_CANAL2.161e-1832.78ATP-dependent RNA helicase DRS1 OS=Candida albican... [more]
RRP3_YARLI2.822e-1832.22ATP-dependent rRNA helicase RRP3 OS=Yarrowia lipol... [more]
RRP3_ASPFU2.822e-1832.98ATP-dependent rRNA helicase rrp3 OS=Aspergillus fu... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100AG08RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262516 ID=DY262516; Name=DY262516; organism=Citrus clementina; type=EST; length=1313bp
CGAGTAGTCAGCCACCGCTCATCATCTTCTCTTAGCATCATCGTCATCAG
CCTGTTACGGACTCCTGTTCAGCGCCATCTCCTCTCACGGCAGCTCACAA
CACGCTGCAGCCTGCAGTCCGTCAAGCTTCCGTCAGCGCCATCTCTCACG
GAAACTCACAACACGCTGCAGCCTGCAATCCGTCAAGCTTCTCACGCCAT
CGCCGTCACTAGTATTGCCGAACTGCTGTCAAGGACTCAAGGGTTTAGAT
TTGTCGGAGAAGAATAATGGAGGAAGCAAAGAAGAAGAGCGTGCCAGTCT
TGCCGTGGATGCGAAGCCCGGTTGATGTCAGTCTCTTTGAAGACTGTCCT
CTTGATCACCTCCCTTGTCTTGACCCCAGAACATGGGTATCTCGTCACTC
TTCCCAGTGCAAGTTGCAGTTTGGCAAGAGACAATAGGCCCTGGTCTATT
TGAACGAGACCTTTGCATCAATTCACCTACAGGAAGTGGGAAAACTTTGT
CTTATGCTTTGCCAATAGTTCAAACATTGTCCAATCGTGCTGTTAGATGT
CTACGTGCTTTGGTGGTGCTGCCCACGCGTGATCTAGCTTTGCAGGTCAA
GGATGTTTTCGCTGCGATTGCACCTGCAGTGGGTTTGTCTGTTGGTTTGG
CTGTGGGTCAATCTTCTATTGCTGATGAAATTTCGGAGCTTATTAAGAGA
CCTAAGCTCGAGGCAGGAATCTGTTATGACCCTGAAGATGTTTTGCAAGA
GTTACAGAGTGCAGTAGATATATTGGTGGCAACTCCAGGAAGGCTAATGG
ACCATATCAATGCTACTAGGGGATTTACCCTCGAGCATCTCTGTTACCTT
GTTGTTGACGAAACTGATCGATTGCTTAGGGAGGCATATCAAGCTTGGCT
GCCCACTGTGCTCCAATTAACTCGATCTGATAATGAAACCGCTTTTCTGA
TGCAGTACTTTTCTGGTTTCAGCATTTGGCTCTTTAAAACCATAAGAAAG
ATGTGGTGTTGAAAGGGGCTTTAAGGACAAACTTAACCTAAGCTTGGGAA
GAAGGGTTTACCGGCCCCGTTAACCCAAGAATCAAAAAACCCCGTCCAAC
TTGAATTTGCATCACCCCTTTATTCCGGAACCCTGGGGAAAAACCCTTTA
AAACCCCCCACAAAAAAATGGGAACCCAACAAAAAAGAAATTTGGGGATC
CAAAAACACGAAACCCCTTTTTTATTTTTGGTTGGGACCTTCTCTTCTAA
AAAATAATATGAAAAGGAAAAAGAAAAAGAAATGTGGTTGCTTTTCTCCC
CCACCATCCCCCC
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