DY262516
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY262516 vs. ExPASy Swiss-Prot
Match: RRP3_SCLS1 (ATP-dependent rRNA helicase rrp3 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=rrp3 PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 1.655e-18 Identity = 64/186 (34.41%), Postives = 98/186 (52.69%), Query Frame = 2 Query: 383 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNET 940 +G + P+Q +E+I L RDL + TGSGKT ++ALPI+Q+L ++ + L LV+ PTR+LA Q+ F A+ + + + VG + + L K+P I+VATPGRL+DH+ T+GF+L L YLV+DE DRLL + L +L++ + T Sbjct: 74 LGYKAPTPIQ----RESIPLALQGRDLIGLAETGSGKTAAFALPILQSLLDKP-QPLFGLVLAPTRELAYQISQSFEALGSIIRVKCAVIVGGMDMVPQAIALGKKPH---------------------IIVATPGRLLDHLENTKGFSLRSLKYLVMDEADRLLDLDFGPILDKILKVLPRERRT 233
BLAST of DY262516 vs. ExPASy Swiss-Prot
Match: RRP3_PHANO (ATP-dependent rRNA helicase RRP3 OS=Phaeosphaeria nodorum GN=RRP3 PE=3 SV=2) HSP 1 Score: 94.3597 bits (233), Expect = 1.655e-18 Identity = 60/191 (31.41%), Postives = 97/191 (50.79%), Query Frame = 2 Query: 377 QNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNETAFL 949 +N+G + P+Q E+I L +D+ + TGSGKT ++ LPI+Q L ++ + L++ PTR+LA Q+ A+ + + VG + + L KRP I+VA+PGRL+DH+ T+GF+L+HL YLV+DE DRLL + L + ++ D+ +L Sbjct: 131 ENLGYKTATPIQT----ESIPLALAGKDIIGLAETGSGKTAAFVLPILQALLDKP-QAYFGLIMAPTRELAYQISQQVDALGSIINVKCATLVGGMDMVPQAIALSKRPH---------------------IIVASPGRLLDHLENTKGFSLKHLKYLVLDEADRLLDLDFGDSLDKIFKVLPRDDRHTYL 295
BLAST of DY262516 vs. ExPASy Swiss-Prot
Match: RRP3_NEOFI (ATP-dependent rRNA helicase rrp3 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=rrp3 PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 1.655e-18 Identity = 62/188 (32.98%), Postives = 95/188 (50.53%), Query Frame = 2 Query: 377 QNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNET 940 + MG + P+Q E+I L RDL + TGSGKT ++ALPI+Q L + + L++ PTR+LA Q+ F ++ + + + VG + + L K+P I+VATPGRL+DH+ T+GF+L L YLV+DE DRLL + L +L++ + T Sbjct: 68 ETMGYKAPTPIQA----ESIPLALQGRDLIGLAETGSGKTAAFALPILQALMEKP-QSFFGLILAPTRELAFQISKSFESLGSTINVRCAVIVGGMDMVSQSIALGKKPH---------------------IIVATPGRLLDHLENTKGFSLRTLKYLVMDEADRLLDMDFGPLLDKILKVLPRERRT 229
BLAST of DY262516 vs. ExPASy Swiss-Prot
Match: RRP3_COCIM (ATP-dependent rRNA helicase RRP3 OS=Coccidioides immitis GN=RRP3 PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 1.655e-18 Identity = 62/179 (34.64%), Postives = 93/179 (51.96%), Query Frame = 2 Query: 404 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNET 940 P Q+ E+I L RDL + TGSGKT ++ALPI+Q L ++ + + LV+ PTR+LA Q+ F A+ + + + VG + + L K+P I+VATPGRL+DH+ T+GF+L L YLV+DE DRLL + L +L++ + T Sbjct: 71 PTQIQA--ESIPLALQGRDLIGLAETGSGKTAAFALPILQALMDKP-QSMFGLVLAPTRELAYQISQQFEALGSLISVRCAVIVGGMDMVSQAIALGKKPH---------------------IIVATPGRLLDHLENTKGFSLRSLKYLVMDEADRLLDLDFGPILDKILKVLPKERRT 225
BLAST of DY262516 vs. ExPASy Swiss-Prot
Match: DRS1_YARLI (ATP-dependent RNA helicase DRS1 OS=Yarrowia lipolytica GN=DRS1 PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 1.655e-18 Identity = 61/189 (32.28%), Postives = 99/189 (52.38%), Query Frame = 2 Query: 386 GISSL-FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA--VRCLRALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNET 940 GIS+L + + TI L +DL + TGSGKT +Y +P+++ L ++ V + +V+ PTR+L++QV DV +A V G+ GLAVG ++ + EL RP ++++ATPGR +DH+ + F ++ + LV+DE DR+L E +Q L +L L +T Sbjct: 266 GISALGYQAPTPIQSRTIPIALMGKDLVAGAVTGSGKTAAYIIPVLERLLYKSSKVAATKVVVLTPTRELSIQVADVGKKLAQYVSGVRFGLAVGGLNLRVQEQELKTRP---------------------EVVIATPGRFIDHVRNSPSFNVDDVEILVIDEADRMLEEGFQQELTEILTLLPKKRQT 433
BLAST of DY262516 vs. ExPASy Swiss-Prot
Match: RRP3_BOTFB (ATP-dependent rRNA helicase rrp3 OS=Botryotinia fuckeliana (strain B05.10) GN=rrp3 PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 2.161e-18 Identity = 64/186 (34.41%), Postives = 97/186 (52.15%), Query Frame = 2 Query: 383 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNET 940 +G + P+Q +E+I L RDL + TGSGKT ++ALPI+Q L ++ + L LV+ PTR+LA Q+ F A+ + + + VG + + L K+P I+VATPGRL+DH+ T+GF+L L YLV+DE DRLL + L +L++ + T Sbjct: 78 LGYKAPTPIQ----RESIPLALQGRDLIGLAETGSGKTAAFALPILQALLDKP-QPLFGLVLAPTRELAYQISQQFEALGSVIRVKCAVIVGGMDMVPQSIALGKKPH---------------------IIVATPGRLLDHLENTKGFSLRSLKYLVMDEADRLLDLDFGPILDKILKVLPRERRT 237
BLAST of DY262516 vs. ExPASy Swiss-Prot
Match: DRS1_CANGA (ATP-dependent RNA helicase DRS1 OS=Candida glabrata GN=DRS1 PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 2.161e-18 Identity = 64/190 (33.68%), Postives = 97/190 (51.05%), Query Frame = 2 Query: 380 NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA--VRCLRALVVLPTRDLALQVKDVFAAIAPAVG-LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNET 940 N+G P+Q A TI L +D+ + TGSGKT ++ +PI++ L + V R +V+ PTR+LA+QV DV I V L+ GLAVG ++ + L RP DI++ATPGR +DHI + F ++ + LV+DE DR+L + +Q L ++ L S +T Sbjct: 223 NLGYVKPSPIQSA----TIPIALLGKDIIAGAVTGSGKTAAFMIPIIERLLYKPAKVASTRVIVLTPTRELAIQVADVGKKIGQFVSNLTFGLAVGGLNLRQQEQMLKTRP---------------------DIVIATPGRFIDHIRNSASFNVDSVEVLVIDEADRMLEDGFQDELNEIMSLLPSKRQT 387
BLAST of DY262516 vs. ExPASy Swiss-Prot
Match: DRS1_CANAL (ATP-dependent RNA helicase DRS1 OS=Candida albicans GN=DRS1 PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 2.161e-18 Identity = 59/180 (32.78%), Postives = 96/180 (53.33%), Query Frame = 2 Query: 386 GISSL-FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG-LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 919 GI+ L F + +I L +D+ + TGSGKT +Y +PI++ L + + +++ PTR+LALQV + ++ V L++GLAVG ++ + +L RP DI++ATPGRL+DHI + F+++ + LV+DE DR+L E +Q L +L L Sbjct: 144 GIAELKFTKPTPIQSASIPIALLGKDIVAGAQTGSGKTGAYMIPIIERLLYKPSTSTKVIILTPTRELALQVYEFGKKLSHHVNNLNIGLAVGGLNLRQQEEQLKTRP---------------------DIVIATPGRLIDHIRNSPSFSVQDIQVLVIDEADRMLEEGFQDELTEILSL 302
BLAST of DY262516 vs. ExPASy Swiss-Prot
Match: RRP3_YARLI (ATP-dependent rRNA helicase RRP3 OS=Yarrowia lipolytica GN=RRP3 PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 2.822e-18 Identity = 58/180 (32.22%), Postives = 94/180 (52.22%), Query Frame = 2 Query: 401 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNET 940 F + ++I L RD+ + TGSGKT ++A+P++Q+L + L +V+ PTR+LA Q+ + F A+ A+GL + VG ++ + L K+P ++VATPGRL+DH+ T+GF+L L +LV+DE DRLL + L +L++ T Sbjct: 84 FTKPTPIQAQSIPYALEGRDIIGLAQTGSGKTAAFAIPVLQSLYENP-QPLYCVVLAPTRELAYQISETFEALGSAMGLRTAVVVGGMNMMTQAVALSKKPH---------------------VIVATPGRLVDHLENTKGFSLRTLKFLVMDEADRLLDMEFGPSLDKILKVIPRQRNT 241
BLAST of DY262516 vs. ExPASy Swiss-Prot
Match: RRP3_ASPFU (ATP-dependent rRNA helicase rrp3 OS=Aspergillus fumigatus GN=rrp3 PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 2.822e-18 Identity = 62/188 (32.98%), Postives = 94/188 (50.00%), Query Frame = 2 Query: 377 QNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNET 940 + MG + P+Q E+I L RDL + TGSGKT ++ALPI+Q L + L++ PTR+LA Q+ F ++ + + + VG + + L K+P I+VATPGRL+DH+ T+GF+L L YLV+DE DRLL + L +L++ + T Sbjct: 68 ETMGYKAPTPIQA----ESIPLALQGRDLIGLAETGSGKTAAFALPILQALMENP-QSFFGLILAPTRELAFQISKSFESLGSTINVRCAVIVGGMDMVSQSIALGKKPH---------------------IIVATPGRLLDHLENTKGFSLRTLKYLVMDEADRLLDMDFGPLLDKILKVLPRERRT 229 The following BLAST results are available for this feature:
BLAST of DY262516 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 338
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Sequences
The
following sequences are available for this feature:
EST sequence >DY262516 ID=DY262516; Name=DY262516; organism=Citrus clementina; type=EST; length=1313bpback to top |