DY262517

Overview
NameDY262517
Unique NameDY262517
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1309
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262517 vs. ExPASy Swiss-Prot
Match: HIR1_SCHPO (Protein hir1 OS=Schizosaccharomyces pombe GN=hip1 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 5.139e-12
Identity = 49/172 (28.49%), Postives = 77/172 (44.77%), Query Frame = 1
Query:  301 DKTVRIWEQSASSRSWNCKAVLEEM---------HTRTVRSCAWSPSGKLLATASFDATTCIW---EDVGG-------------DYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAED 741
            D T+RIW   A +R    +   E++         HT TV S  +SP+G+ LA+ S D    IW   E + G             ++     L GH+N+++ + W+    L+ + G D S+ +W    G  FE +  ++ H   VK + + P      + S D TIKVW   D
Sbjct:   39 DGTIRIWSTEAINRENENENENEDLPKQLCCMSTHTGTVTSVRFSPNGQYLASGSDDRVVIIWHKEEAIPGLGSTFGSGEKHTENWRSYRRLLGHDNDIQDLCWSYDSQLVVSVGLDSSIIVWN---GTTFERLKRIEAHQSHVKGITFDPAGKYFATESDDRTIKVWRVSD 207          
BLAST of DY262517 vs. ExPASy Swiss-Prot
Match: WSB2_HUMAN (WD repeat and SOCS box-containing protein 2 OS=Homo sapiens GN=WSB2 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 6.712e-12
Identity = 54/205 (26.34%), Postives = 94/205 (45.85%), Query Frame = 1
Query:  280 VFASCSGDKTVRIWEQSASSRSWNCKAVLEEMHTRTVRSCAWSPSGKL-LATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVW---WAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLYIKIW 882
            V A+   D  ++IWE        N        H   VR  +++PSG L L +AS D T  IW D+    + +  L GH   V   S +   ++L +   +KSV++W +     +  +  L+GH   V    + P   +L + SYD  + +W     E   S +   V    + ++ H S++ ++ F+ +G  L + +DD  ++IW
Sbjct:  125 VLATGLNDGQIKIWEVQTGLLLLNLSG-----HQDVVRDLSFTPSGSLILVSASRDKTLRIW-DLNKHGKQIQVLSGHLQWVYCCSISPDCSMLCSAAGEKSVFLWSM---RSYTLIRKLEGHQSSVVSCDFSPDSALLVTASYDTNVIMWDPYTGERLRSLHHTQVDPAMDDSDVHISSLRSVCFSPEGLYLATVADDRLLRIW 320          
BLAST of DY262517 vs. ExPASy Swiss-Prot
Match: WDR48_DROSI (WD repeat-containing protein 48 homolog OS=Drosophila simulans GN=GD25924 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 6.712e-12
Identity = 53/223 (23.77%), Postives = 99/223 (44.39%), Query Frame = 1
Query:  289 SCSGDKTVRIWEQSASSRSWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEV------MPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLYIKIWGGGH---------YKDAIW 912
            S   D  +R+W     S     +++  E H   V       +G+ L +AS D T  +W    G   C++TL  H + V+++++      +A+ G DK++++W+V         N     S L G    +  +  +P+  V+ S S +N +++W       D   C++ +     GH+  +  L  +  G+++VS S D  IK+W  G          +K+ +W
Sbjct:   45 SAGRDAIIRVWNTRTDSSEKYIQSM--EHHNDWVNDIVLCCNGRNLISASCDTTVKVWNAQKGF--CMSTLRTHRDYVQALAYAKDREQVASAGLDKAIFLWDVNTLTALTASNNTVTTSSLTGSKDSIYSLAMNPSGTVIVSGSTENILRIW-------DPRTCMRIM--KLRGHTENVRCLVVSPDGNQVVSGSSDGTIKVWNLGQQRCVQTIHVHKEGVW 254          
BLAST of DY262517 vs. ExPASy Swiss-Prot
Match: WDR48_DROSE (WD repeat-containing protein 48 homolog OS=Drosophila sechellia GN=GM20456 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 6.712e-12
Identity = 53/223 (23.77%), Postives = 99/223 (44.39%), Query Frame = 1
Query:  289 SCSGDKTVRIWEQSASSRSWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEV------MPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLYIKIWGGGH---------YKDAIW 912
            S   D  +R+W     S     +++  E H   V       +G+ L +AS D T  +W    G   C++TL  H + V+++++      +A+ G DK++++W+V         N     S L G    +  +  +P+  V+ S S +N +++W       D   C++ +     GH+  +  L  +  G+++VS S D  IK+W  G          +K+ +W
Sbjct:   45 SAGRDAIIRVWNTRTDSSEKYIQSM--EHHNDWVNDIVLCCNGRNLISASCDTTVKVWNAQKGF--CMSTLRTHRDYVQALAYAKDREQVASAGLDKAIFLWDVNTLTALTASNNTVTTSSLTGSKDSIYSLAMNPSGTVIVSGSTENILRIW-------DPRTCMRIM--KLRGHTENVRCLVVSPDGNQVVSGSSDGTIKVWNLGQQRCVQTIHVHKEGVW 254          
BLAST of DY262517 vs. ExPASy Swiss-Prot
Match: WDR48_DROME (WD repeat-containing protein 48 homolog OS=Drosophila melanogaster GN=CG9062 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 6.712e-12
Identity = 53/223 (23.77%), Postives = 99/223 (44.39%), Query Frame = 1
Query:  289 SCSGDKTVRIWEQSASSRSWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEV------MPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLYIKIWGGGH---------YKDAIW 912
            S   D  +R+W     S     +++  E H   V       +G+ L +AS D T  +W    G   C++TL  H + V+++++      +A+ G DK++++W+V         N     S L G    +  +  +P+  V+ S S +N +++W       D   C++ +     GH+  +  L  +  G+++VS S D  IK+W  G          +K+ +W
Sbjct:   45 SAGRDAIIRVWNTRTDSSEKYIQSM--EHHNDWVNDIVLCCNGRNLISASCDTTVKVWNAQKGF--CMSTLRTHRDYVQALAYAKDREQVASAGLDKAIFLWDVNTLTALTASNNTVTTSSLTGSKDSIYSLAMNPSGTVIVSGSTENILRIW-------DPRTCMRRM--KLRGHTENVRCLVVSPDGNQVVSGSSDGTIKVWNLGQQRCVQTIHVHKEGVW 254          
BLAST of DY262517 vs. ExPASy Swiss-Prot
Match: WDR48_DANRE (WD repeat-containing protein 48 OS=Danio rerio GN=wdr48 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 6.712e-12
Identity = 53/206 (25.73%), Postives = 92/206 (44.66%), Query Frame = 1
Query:  301 DKTVRIWEQSASSRSWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEV------MPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLYIKIWGGGHYK 900
            D  +RIW  S +    +      E HT  V       +GK L +AS D T  +W    G   C++TL  H++ VK++++     L+A+ G D+ +++W+V         N     S L G+   +  +  + T  V+ S S +  ++VW       D   C + +     GH+  + +L  N  G + +S S D  I++W  G  +
Sbjct:   51 DSIIRIW--SVNQHKQDPYIASMEHHTDWVNDIILCCNGKTLISASSDTTVKVWNAHKGF--CMSTLRTHKDYVKALAYAKDKELVASAGLDRQIFLWDVNTLTALTASNNTVTTSSLSGNKDSIYSLAMNQTGTVIISGSTEKVLRVW-------DPRTCAKLMKLK--GHTDNVKSLLLNRDGTQCLSGSSDGTIRLWSLGQQR 243          
BLAST of DY262517 vs. ExPASy Swiss-Prot
Match: GRWD1_RAT (Glutamate-rich WD repeat-containing protein 1 OS=Rattus norvegicus GN=Grwd1 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 6.712e-12
Identity = 51/192 (26.56%), Postives = 82/192 (42.71%), Query Frame = 1
Query:  166 FLDDGNYELREIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRSWNCKAVLEEMHTRTVRSCAWSPS-GKLLATASFDATTCIWE--DVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCS-YDNTIKVW 729
            FL D    ++ I +  GH    ++L W P      V     +    K + +W  +    SWN        HTR+V    WSP+   + A+ S DA+  IW+     G    + T   H+ +V  +SW+     L + G D ++ +W++        V+  + H   V  V+WHP    +F+ S  DN I  W
Sbjct:  195 FLRDEQARVKPIFSFAGHMGEGFALDWSPR-----VPGRLLTGDCQKNIHLWTPTDGG-SWNVDQRPFVGHTRSVEDLQWSPTEDTVFASCSADASIRIWDIRAAPGKACMLTTAAAHDGDVNVISWSRREPFLLSGGDDGTLKVWDLRQFKSGSPVATFKQHVAPVTSVEWHPQDSGVFAASGADNQITQW 380          
BLAST of DY262517 vs. ExPASy Swiss-Prot
Match: YB1C_SCHPO (Uncharacterized WD repeat-containing protein C3D6.12 OS=Schizosaccharomyces pombe GN=SPBC3D6.12 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 8.766e-12
Identity = 62/241 (25.73%), Postives = 101/241 (41.91%), Query Frame = 1
Query:  199 IQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASS----------RSWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLYIKIWGGG 891
            I+ ++ H   +W LA     G DG    FA+ S D TV++W   +S            +   +   +   T  V +   SP G+ +A +  D T  ++       +    L GH+  V S+  +    LL TC  DK+V IW +  G   +C   +  H   +  V + P     F+CS D  ++ W     D  ++  +  +     GH S +WAL+       +VS S D  I++W  G
Sbjct:  470 IERIQAHDGAIWDLA----VGHDGT--YFATASADHTVKLWSLKSSFDFVPGTTRKVTTLKLEQTRQIDFTDDVLAVKISPDGRFVAASLLDNTVKVY--YLDSLKFFLNLYGHKLPVLSMDISYDSKLLVTCSADKNVKIWGLDFG---DCHKSIFAHQDSIMEVTFQPDTYNFFTCSKDREVRYW-----DGKSFDLILKL----RGHHSEVWALAVGP--TFVVSGSHDHSIRLWEQG 688          
BLAST of DY262517 vs. ExPASy Swiss-Prot
Match: WDR48_DROMO (WD repeat-containing protein 48 homolog OS=Drosophila mojavensis GN=GI19644 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 8.766e-12
Identity = 53/223 (23.77%), Postives = 99/223 (44.39%), Query Frame = 1
Query:  289 SCSGDKTVRIWEQSASSRSWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEV------MPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLYIKIWGGGH---------YKDAIW 912
            S   D  +R+W     +     +++  E H   V       +G+ L +AS D T  +W    G   C++TL  H + V+++++      +A+ G DK++++W+V         N     S L G    +  +  +P+  V+ S S +N +++W       D   C++  S    GH+  +  L  +  G+++VS S D  IK+W  G          +K+ +W
Sbjct:   45 SAGRDAIIRVWNTRTEANEKYIQSM--EHHNDWVNDIVLCCNGRNLISASCDTTVKVWNAHKGF--CMSTLRTHRDYVQALAYAKDREQVASAGLDKAIFLWDVNTLTALTASNNTVTTSSLTGSKDSIYSLAMNPSGTVIVSGSTENILRIW-------DPRTCMR--SMKLRGHTENVRCLVVSPDGNQVVSGSSDGTIKVWNLGQQRCIQTIHVHKEGVW 254          
BLAST of DY262517 vs. ExPASy Swiss-Prot
Match: UTP12_YEAST (U3 small nucleolar RNA-associated protein 12 OS=Saccharomyces cerevisiae GN=DIP2 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 8.766e-12
Identity = 72/264 (27.27%), Postives = 108/264 (40.91%), Query Frame = 1
Query:  127 NRSLTLFTVRSMEFLDDGNYELREIQTLE-GHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIW----EQSASSRSWNCKAVLEEMH-------TRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLYIKIW 882
            N  L LF + S   LD          T+E  H   +WSL        DG   V  S   DKTV+ W    E S    + N    + ++H       T  +     SP  + LA +  D T  ++       +   +L GH+  V S+  +    ++ T   DK++ IW +  G   +C   L  H   +  V++ P     FSCS D  +K W     D + + C+Q +      H S +WAL+    G  +VS S D  I+IW
Sbjct:  451 NGELQLFDLASSSLLD----------TIEDAHDAAIWSLDLTS----DGKRLVTGSA--DKTVKFWDFKVENSLVPGTKNKFLPVLKLHHDTTLELTDDILCVRVSPDDRYLAISLLDNTVKVF--FLDSMKFYLSLYGHKLPVLSIDISFDSKMIITSSADKNIKIWGLDFG---DCHKSLFAHQDSIMNVKFLPQSHNFFSCSKDAVVKYW-----DGEKFECIQKLY----AHQSEVWALAVATDGGFVVSSSHDHSIRIW 684          
The following BLAST results are available for this feature:
BLAST of DY262517 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 344
Match NameE-valueIdentityDescription
HIR1_SCHPO5.139e-1228.49Protein hir1 OS=Schizosaccharomyces pombe GN=hip1 ... [more]
WSB2_HUMAN6.712e-1226.34WD repeat and SOCS box-containing protein 2 OS=Hom... [more]
WDR48_DROSI6.712e-1223.77WD repeat-containing protein 48 homolog OS=Drosoph... [more]
WDR48_DROSE6.712e-1223.77WD repeat-containing protein 48 homolog OS=Drosoph... [more]
WDR48_DROME6.712e-1223.77WD repeat-containing protein 48 homolog OS=Drosoph... [more]
WDR48_DANRE6.712e-1225.73WD repeat-containing protein 48 OS=Danio rerio GN=... [more]
GRWD1_RAT6.712e-1226.56Glutamate-rich WD repeat-containing protein 1 OS=R... [more]
YB1C_SCHPO8.766e-1225.73Uncharacterized WD repeat-containing protein C3D6.... [more]
WDR48_DROMO8.766e-1223.77WD repeat-containing protein 48 homolog OS=Drosoph... [more]
UTP12_YEAST8.766e-1227.27U3 small nucleolar RNA-associated protein 12 OS=Sa... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100AG09RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262517 ID=DY262517; Name=DY262517; organism=Citrus clementina; type=EST; length=1309bp
CCAAGCTTCTGGTTTTAAACTTTATTCTAGTCCCTCGGCAGCGTTGGCTG
CTCACTGTTTGTTGTTACCAATCAACCTAAACAGCGAGCTAGTTAGCTAC
TTTTGATCATCCAAAAGGAACAGTTAAATCGATCATTAACGTTATTTACA
GTTCGTTCAATGGAGTTTCTGGATGACGGAAATTATGAGCTGAGAGAGAT
TCAAACACTCGAAGGCCATACCGACAGAGTCTGGAGCCTCGCTTGGAAGC
CGACCGCCGGCGTCGACGGTGTTGCGCCGGTCTTTGCTTCCTGTAGTGGT
GATAAGACCGTACGAATCTGGGAGCAGAGCGCCTCCTCTCGCTCTTGGAA
TTGCAAGGCAGTTTTGGAGGAAATGCACACGAGAACTGTTCGATCCTGTG
CCTGGTCGCCCTCAGGGAAATTGTTGGCCACTGCGAGTTTCGATGCCACC
ACTTGTATTTGGGAAGATGTTGGGGGTGATTATGAATGTGTCGCCACTTT
AGAGGGTCATGAAAATGAAGTAAAAAGTGTGTCTTGGAATGCATCTGGTA
CTTTGCTTGCAACATGTGGTCGAGACAAATCTGTTTGGATTTGGGAAGTA
ATGCCAGGAAATGAATTTGAGTGTGTTTCAGTGTTGCAAGGACACGCGCA
AGATGTGAAAATGGTTCAATGGCATCCAACCATGGATGTCTTATTTTCTT
GTAGCTATGATAACACTATTAAGGTCTGGTGGGCAGAGGATACTGATAGT
GATAATTGGCATTGTGTTCAAACCATAAGTGAATCTAACAATGGTCACTC
TTCTACCATTTGGGCCCTATCATTTAATGCCAAGGGAGACAAACTGGTTA
GCTGCAGTGATGATCTTTACATAAAGATATGGGGGGGCGGACATTACAAG
GATGCAATCTGGTGATGGCTATGCCTCTTGGAAACATCTTTGTACCATCT
CAGGTTATCATGATCGAACAATTTTTTCAGTTCACTGGTCAAGGAAAGGT
ATTATGGCAGGGGGAACAGCTGATGATTCTGTAACATTTCTTGGTGGAAA
AGCAAAAAAGATTTGATGGAAGGACCTTCTAAATAAATGGTGTTAAAAAA
GGGAAAGGGCCCATGAAATGGGAGGTTAATTCAATGCAAAGGAACCCCCT
GGGGGAACCGCCGGGCGGGTGGGCCCCCTGGCAAGGGAAAAAGGGGGAGG
AAAAAAAAAAAATGGGGAACACGGGGGCAAAAAACCTTTTTGAAAAAAAA
AAGAAGGGCGGTAAGAGGGGAGAAATTTTTTCAATAAGTGGGGAGAAAAA
GCGGTGGGG
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