DY262517

Overview
NameDY262517
Unique NameDY262517
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1309
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262517 vs. ExPASy Swiss-Prot
Match: COPA_SCHPO (Putative coatomer subunit alpha OS=Schizosaccharomyces pombe GN=SPBPJ4664.04 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.692e-11
Identity = 57/258 (22.09%), Postives = 102/258 (39.53%), Query Frame = 1
Query:  199 IQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRSWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEV-----------------------------MPGNEFECVS-VLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLYIKIW 882
            +   +GH   V  +A+ PT       P+F S   D  V +W   +    ++        H   VR C +      + + S D T  IW        C+A L GH + V   +++ S  L+ +   D++V +W++                             + G+    V  VL+GH + V    +HPT+ ++ S   D  +K+W    T S  W       ++  GH + +    F+   + ++S S+D  I++W
Sbjct:   46 LDRFDGHDGPVRGIAFHPTQ------PLFVSGGDDYKVNVWNYKSRKLLFSLCG-----HMDYVRVCTFHHEYPWILSCSDDQTIRIWN--WQSRNCIAILTGHSHYVMCAAFHPSEDLIVSASLDQTVRVWDISGLRMKNAAPVSMSLEDQLAQAHNSISNDLFGSTDAIVKFVLEGHDRGVNWCAFHPTLPLILSAGDDRLVKLW--RMTASKAWEV-----DTCRGHFNNVSCCLFHPHQELILSASEDKTIRVW 283          
BLAST of DY262517 vs. ExPASy Swiss-Prot
Match: COPA_MOUSE (Coatomer subunit alpha OS=Mus musculus GN=Copa PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.692e-11
Identity = 57/210 (27.14%), Postives = 89/210 (42.38%), Query Frame = 1
Query:  181 NYELRE-IQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRSWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWE------------------------DVGGDYECVA--TLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVW 729
            NY+LR  + TL GH D +       T       P   S S D+T+R+W      +S  C  VL   H   V    + PS  L+ +AS D T  +W+                        D+ G  + V    LEGH+  V   +++ +  L+ +   D+ V IW +     +E V   +GH  +V    +HP  +++ S S D +I+VW
Sbjct:   79 NYKLRRCLFTLLGHLDYI------RTTFFHHEYPWILSASDDQTIRVWNW----QSRTCVCVLTG-HNHYVMCAQFHPSEDLVVSASLDQTVRVWDISGLRKKNLSPGAVESDVRGITGVDLFGTTDAVVKHVLEGHDRGVNWAAFHPTMPLIVSGADDRQVKIWRMNESKAWE-VDTCRGHYNNVSCAVFHPRQELILSNSEDKSIRVW 276          
BLAST of DY262517 vs. ExPASy Swiss-Prot
Match: COPA_BOVIN (Coatomer subunit alpha OS=Bos taurus GN=COPA PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.692e-11
Identity = 57/210 (27.14%), Postives = 89/210 (42.38%), Query Frame = 1
Query:  181 NYELRE-IQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRSWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWE------------------------DVGGDYECVA--TLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVW 729
            NY+LR  + TL GH D +       T       P   S S D+T+R+W      +S  C  VL   H   V    + PS  L+ +AS D T  +W+                        D+ G  + V    LEGH+  V   +++ +  L+ +   D+ V IW +     +E V   +GH  +V    +HP  +++ S S D +I+VW
Sbjct:   79 NYKLRRCLFTLLGHLDYI------RTTFFHHEYPWILSASDDQTIRVWNW----QSRTCVCVLTG-HNHYVMCAQFHPSEDLVVSASLDQTVRVWDISGLRKKNLSPGAVESDVRGITGVDLFGTTDAVVKHVLEGHDRGVNWAAFHPTMPLIVSGADDRQVKIWRMNESKAWE-VDTCRGHYNNVSCAVFHPRQELILSNSEDKSIRVW 276          
BLAST of DY262517 vs. ExPASy Swiss-Prot
Match: COPA2_ARATH (Coatomer subunit alpha-2 OS=Arabidopsis thaliana GN=At2g21390 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.692e-11
Identity = 56/209 (26.79%), Postives = 92/209 (44.02%), Query Frame = 1
Query:  181 NYEL-REIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRSWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWE-----------------------DVGGDYECVA--TLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVW 729
            NY+  R + TL GH D + ++ +          P   S S D+T+RIW      +S  C +VL   H   V   ++ P   L+ +AS D T  +W+                       D+ G  + +    LEGH+  V   S++ +  L+ +   D+ V +W +     +E V  L+GH  +V  V +H   D++ S S D +I+VW
Sbjct:   79 NYKTHRCLFTLLGHLDYIRTVQFHHEN------PWIVSASDDQTIRIWNW----QSRTCISVLTG-HNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALKKKSASPADDLMRFSQMNSDLFGGVDAIVKYVLEGHDRGVNWASFHPTLPLIVSGADDRQVKLWRMNETKAWE-VDTLRGHMNNVSSVMFHAKQDIIVSNSEDKSIRVW 275          
The following BLAST results are available for this feature:
BLAST of DY262517 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 344
Match NameE-valueIdentityDescription
COPA_SCHPO9.692e-1122.09Putative coatomer subunit alpha OS=Schizosaccharom... [more]
COPA_MOUSE9.692e-1127.14Coatomer subunit alpha OS=Mus musculus GN=Copa PE=... [more]
COPA_BOVIN9.692e-1127.14Coatomer subunit alpha OS=Bos taurus GN=COPA PE=1 ... [more]
COPA2_ARATH9.692e-1126.79Coatomer subunit alpha-2 OS=Arabidopsis thaliana G... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100AG09RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262517 ID=DY262517; Name=DY262517; organism=Citrus clementina; type=EST; length=1309bp
CCAAGCTTCTGGTTTTAAACTTTATTCTAGTCCCTCGGCAGCGTTGGCTG
CTCACTGTTTGTTGTTACCAATCAACCTAAACAGCGAGCTAGTTAGCTAC
TTTTGATCATCCAAAAGGAACAGTTAAATCGATCATTAACGTTATTTACA
GTTCGTTCAATGGAGTTTCTGGATGACGGAAATTATGAGCTGAGAGAGAT
TCAAACACTCGAAGGCCATACCGACAGAGTCTGGAGCCTCGCTTGGAAGC
CGACCGCCGGCGTCGACGGTGTTGCGCCGGTCTTTGCTTCCTGTAGTGGT
GATAAGACCGTACGAATCTGGGAGCAGAGCGCCTCCTCTCGCTCTTGGAA
TTGCAAGGCAGTTTTGGAGGAAATGCACACGAGAACTGTTCGATCCTGTG
CCTGGTCGCCCTCAGGGAAATTGTTGGCCACTGCGAGTTTCGATGCCACC
ACTTGTATTTGGGAAGATGTTGGGGGTGATTATGAATGTGTCGCCACTTT
AGAGGGTCATGAAAATGAAGTAAAAAGTGTGTCTTGGAATGCATCTGGTA
CTTTGCTTGCAACATGTGGTCGAGACAAATCTGTTTGGATTTGGGAAGTA
ATGCCAGGAAATGAATTTGAGTGTGTTTCAGTGTTGCAAGGACACGCGCA
AGATGTGAAAATGGTTCAATGGCATCCAACCATGGATGTCTTATTTTCTT
GTAGCTATGATAACACTATTAAGGTCTGGTGGGCAGAGGATACTGATAGT
GATAATTGGCATTGTGTTCAAACCATAAGTGAATCTAACAATGGTCACTC
TTCTACCATTTGGGCCCTATCATTTAATGCCAAGGGAGACAAACTGGTTA
GCTGCAGTGATGATCTTTACATAAAGATATGGGGGGGCGGACATTACAAG
GATGCAATCTGGTGATGGCTATGCCTCTTGGAAACATCTTTGTACCATCT
CAGGTTATCATGATCGAACAATTTTTTCAGTTCACTGGTCAAGGAAAGGT
ATTATGGCAGGGGGAACAGCTGATGATTCTGTAACATTTCTTGGTGGAAA
AGCAAAAAAGATTTGATGGAAGGACCTTCTAAATAAATGGTGTTAAAAAA
GGGAAAGGGCCCATGAAATGGGAGGTTAATTCAATGCAAAGGAACCCCCT
GGGGGAACCGCCGGGCGGGTGGGCCCCCTGGCAAGGGAAAAAGGGGGAGG
AAAAAAAAAAAATGGGGAACACGGGGGCAAAAAACCTTTTTGAAAAAAAA
AAGAAGGGCGGTAAGAGGGGAGAAATTTTTTCAATAAGTGGGGAGAAAAA
GCGGTGGGG
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