DY262517
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY262517 vs. ExPASy Swiss-Prot
Match: COPA_SCHPO (Putative coatomer subunit alpha OS=Schizosaccharomyces pombe GN=SPBPJ4664.04 PE=1 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 9.692e-11 Identity = 57/258 (22.09%), Postives = 102/258 (39.53%), Query Frame = 1 Query: 199 IQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRSWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWEDVGGDYECVATLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEV-----------------------------MPGNEFECVS-VLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVWWAEDTDSDNWHCVQTISESNNGHSSTIWALSFNAKGDKLVSCSDDLYIKIW 882 + +GH V +A+ PT P+F S D V +W + ++ H VR C + + + S D T IW C+A L GH + V +++ S L+ + D++V +W++ + G+ V VL+GH + V +HPT+ ++ S D +K+W T S W ++ GH + + F+ + ++S S+D I++W Sbjct: 46 LDRFDGHDGPVRGIAFHPTQ------PLFVSGGDDYKVNVWNYKSRKLLFSLCG-----HMDYVRVCTFHHEYPWILSCSDDQTIRIWN--WQSRNCIAILTGHSHYVMCAAFHPSEDLIVSASLDQTVRVWDISGLRMKNAAPVSMSLEDQLAQAHNSISNDLFGSTDAIVKFVLEGHDRGVNWCAFHPTLPLILSAGDDRLVKLW--RMTASKAWEV-----DTCRGHFNNVSCCLFHPHQELILSASEDKTIRVW 283
BLAST of DY262517 vs. ExPASy Swiss-Prot
Match: COPA_MOUSE (Coatomer subunit alpha OS=Mus musculus GN=Copa PE=1 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 9.692e-11 Identity = 57/210 (27.14%), Postives = 89/210 (42.38%), Query Frame = 1 Query: 181 NYELRE-IQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRSWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWE------------------------DVGGDYECVA--TLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVW 729 NY+LR + TL GH D + T P S S D+T+R+W +S C VL H V + PS L+ +AS D T +W+ D+ G + V LEGH+ V +++ + L+ + D+ V IW + +E V +GH +V +HP +++ S S D +I+VW Sbjct: 79 NYKLRRCLFTLLGHLDYI------RTTFFHHEYPWILSASDDQTIRVWNW----QSRTCVCVLTG-HNHYVMCAQFHPSEDLVVSASLDQTVRVWDISGLRKKNLSPGAVESDVRGITGVDLFGTTDAVVKHVLEGHDRGVNWAAFHPTMPLIVSGADDRQVKIWRMNESKAWE-VDTCRGHYNNVSCAVFHPRQELILSNSEDKSIRVW 276
BLAST of DY262517 vs. ExPASy Swiss-Prot
Match: COPA_BOVIN (Coatomer subunit alpha OS=Bos taurus GN=COPA PE=1 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 9.692e-11 Identity = 57/210 (27.14%), Postives = 89/210 (42.38%), Query Frame = 1 Query: 181 NYELRE-IQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRSWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWE------------------------DVGGDYECVA--TLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVW 729 NY+LR + TL GH D + T P S S D+T+R+W +S C VL H V + PS L+ +AS D T +W+ D+ G + V LEGH+ V +++ + L+ + D+ V IW + +E V +GH +V +HP +++ S S D +I+VW Sbjct: 79 NYKLRRCLFTLLGHLDYI------RTTFFHHEYPWILSASDDQTIRVWNW----QSRTCVCVLTG-HNHYVMCAQFHPSEDLVVSASLDQTVRVWDISGLRKKNLSPGAVESDVRGITGVDLFGTTDAVVKHVLEGHDRGVNWAAFHPTMPLIVSGADDRQVKIWRMNESKAWE-VDTCRGHYNNVSCAVFHPRQELILSNSEDKSIRVW 276
BLAST of DY262517 vs. ExPASy Swiss-Prot
Match: COPA2_ARATH (Coatomer subunit alpha-2 OS=Arabidopsis thaliana GN=At2g21390 PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 9.692e-11 Identity = 56/209 (26.79%), Postives = 92/209 (44.02%), Query Frame = 1 Query: 181 NYEL-REIQTLEGHTDRVWSLAWKPTAGVDGVAPVFASCSGDKTVRIWEQSASSRSWNCKAVLEEMHTRTVRSCAWSPSGKLLATASFDATTCIWE-----------------------DVGGDYECVA--TLEGHENEVKSVSWNASGTLLATCGRDKSVWIWEVMPGNEFECVSVLQGHAQDVKMVQWHPTMDVLFSCSYDNTIKVW 729 NY+ R + TL GH D + ++ + P S S D+T+RIW +S C +VL H V ++ P L+ +AS D T +W+ D+ G + + LEGH+ V S++ + L+ + D+ V +W + +E V L+GH +V V +H D++ S S D +I+VW Sbjct: 79 NYKTHRCLFTLLGHLDYIRTVQFHHEN------PWIVSASDDQTIRIWNW----QSRTCISVLTG-HNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALKKKSASPADDLMRFSQMNSDLFGGVDAIVKYVLEGHDRGVNWASFHPTLPLIVSGADDRQVKLWRMNETKAWE-VDTLRGHMNNVSSVMFHAKQDIIVSNSEDKSIRVW 275 The following BLAST results are available for this feature:
BLAST of DY262517 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 344
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Sequences
The
following sequences are available for this feature:
EST sequence >DY262517 ID=DY262517; Name=DY262517; organism=Citrus clementina; type=EST; length=1309bpback to top |