DY262529

Overview
NameDY262529
Unique NameDY262529
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length798
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262529 vs. ExPASy Swiss-Prot
Match: AGAL_HUMAN (Alpha-galactosidase A OS=Homo sapiens GN=GLA PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.732e-17
Identity = 59/190 (31.05%), Postives = 92/190 (48.42%), Query Frame = 3
Query:    3 KSFASWGVDYLNYDNCF-NTGTCPKERYPIMSIPLLNSGRTIFFSLCEWG------REDPATWAPKIGNSWRTTGDIKDNWNSMTSLADHNDNWTSY--------AGPGDYNDPDMLEFGIGGMITEDYRAHFNIWALAKASLLIGCHIPAMEKITFYILSNKKMDSFNQDKPWNSREESQKRKENLEGW 527
            ++FA WGVD L +D C+ ++     + Y  MS+ L  +GR+I +S CEW       ++   T   +  N WR   DI D+W S+ S+ D    WTS+        AGPG +NDPDML  G  G+          +WA+  A L +   +  +      +L +K + + NQD P   +    ++ +N E W
Sbjct:  157 QTFADWGVDLLKFDGCYCDSLENLADGYKHMSLALNRTGRSIVYS-CEWPLYMWPFQKPNYTEIRQYCNHWRNFADIDDSWKSIKSILD----WTSFNQERIVDVAGPGGWNDPDMLVIGNFGLSWNQQVTQMALWAIMAAPLFMSNDLRHISPQAKALLQDKDVIAINQD-PLGKQGYQLRQGDNFEVW 340          
BLAST of DY262529 vs. ExPASy Swiss-Prot
Match: AGAL_MOUSE (Alpha-galactosidase A OS=Mus musculus GN=Gla PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.276e-16
Identity = 54/186 (29.03%), Postives = 86/186 (46.24%), Query Frame = 3
Query:    3 KSFASWGVDYLNYDNCFNTGTCPKER-YPIMSIPLLNSGRTIFFSLCEWG------REDPATWAPKIGNSWRTTGDIKDNWNSMTSLAD----HNDNWTSYAGPGDYNDPDMLEFGIGGMITEDYRAHFNIWALAKASLLIGCHIPAMEKITFYILSNKKMDSFNQDKPWNSREESQKRKENLEGW 527
            ++FA WGVD L +D C        E  Y  M++ L  +GR+I +S CEW        +   T      N WR   D+ D+W S+ ++      +       AGPG +NDPDML  G  G+  +       +WA+  A LL+   +  +      +L NK + + NQD P   +    +++ ++E W
Sbjct:  157 QTFADWGVDLLKFDGCHCDSVVSLENGYKYMALALNRTGRSIVYS-CEWPLYLRPFHKPNYTDIQYYCNHWRNFDDVYDSWESIKNILSWTVVYQKEIVEVAGPGSWNDPDMLVIGNFGLSWDQQVTQMALWAIMAAPLLMSNDLRQISSQAKALLQNKDVIAINQD-PLGKQGYCFRKENHIEVW 340          
BLAST of DY262529 vs. ExPASy Swiss-Prot
Match: AGAL_ASPNG (Alpha-galactosidase A OS=Aspergillus niger GN=aglA PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.908e-12
Identity = 55/178 (30.90%), Postives = 79/178 (44.38%), Query Frame = 3
Query:    6 SFASWGVDYLNYDNCFNTGTCP-------KERY-------PIMSIPLLNSGRTIFFSLCEWGREDPAT---WAPKIGNSWRTTGDIK------DNWNSMTSLADHNDNWTSYAGPGDYNDPDMLEFGIGGMITEDYRAHFNIWALAKASLLIGCHIPAMEKITFYILSNKKMDSFNQD 470
            +FASWG+DYL  D C    T         K+RY         M  PL+ S     +        D  T   W P  G   R + DI         W+S+ +  ++N     Y  PG +NDPD L     G+  ++ R+HF +WA   A L+I  +IPA+ K     L+N+ + + NQD
Sbjct:  150 TFASWGIDYLKLDGCNVYATQGRTLEEEYKQRYGHWHQVLSKMQHPLIFSESAPAYFAGTDNNTDWYTVMDWVPIYGELARHSTDILVYSGAGSAWDSIMNNYNYNTLLARYQRPGYFNDPDFLIPDHPGLTADEKRSHFALWASFSAPLIISAYIPALSKDEIAFLTNEALIAVNQD 327          
The following BLAST results are available for this feature:
BLAST of DY262529 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
AGAL_HUMAN5.732e-1731.05Alpha-galactosidase A OS=Homo sapiens GN=GLA PE=1 ... [more]
AGAL_MOUSE8.276e-1629.03Alpha-galactosidase A OS=Mus musculus GN=Gla PE=1 ... [more]
AGAL_ASPNG1.908e-1230.90Alpha-galactosidase A OS=Aspergillus niger GN=aglA... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA100AH09RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262529 ID=DY262529; Name=DY262529; organism=Citrus clementina; type=EST; length=798bp
CAAAATCCTTTGCTTCCTGGGGAGTTGATTACTTGAATTATGATAATTGC
TTTAATACTGGTACATGCCCTAAAGAAAGATATCCGATAATGAGCATACC
ATTATTAAACTCTGGAAGGACAATCTTTTTCTCTCTATGTGAATGGGGAC
GAGAAGATCCTGCTACTTGGGCTCCAAAAATTGGAAATAGTTGGAGAACC
ACAGGTGACATAAAAGACAACTGGAACAGCATGACATCTCTAGCAGATCA
TAATGATAATTGGACATCTTATGCTGGACCTGGAGACTATAATGACCCTG
ATATGCTTGAATTTGGAATTGGAGGCATGATAACCGAAGATTATCGTGCA
CATTTTAACATTTGGGCTCTAGCTAAGGCTTCTTTATTGATTGGATGCCA
TATTCCAGCAATGGAAAAAATAACTTTTTATATACTCAGCAACAAGAAAA
TGGATTCTTTTAACCAAGATAAACCTTGGAATTCAAGGGAAGAAAGTCAA
AAAAGGAAAGAAAATCTTGAAGGTTGGGGCAAGTCCCTTTAATTGGGAAA
AAAAAAAAAGAATAAGTGCTTTTTGAAAAAAAGTTTCTTCCAAAAGCACA
AATTTTATGGGATAATTTGGGTCGAAAAATTTGGCCTTAAAACTTTAAAT
CTTTTTCACCTTGGTGACAAAGAGGGAGGGAAATTTTTTTTCACACAACA
AAAAACCTCTTTCTTTCTTAAACCATGGGGGAAAAAATATCTCCCTATAA
AAAAAATTTTTGGAAAAAACATCCTATTCTGTTTGTTTTTTTAAAAAA
back to top