DY262559

Overview
NameDY262559
Unique NameDY262559
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1104
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262559 vs. ExPASy Swiss-Prot
Match: KCS6_ARATH (3-ketoacyl-CoA synthase 6 OS=Arabidopsis thaliana GN=CUT1 PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 7.662e-43
Identity = 93/193 (48.19%), Postives = 130/193 (67.36%), Query Frame = 1
Query:   97 DDFSKLWNELRFNFGTLLLCLVSLVFTSTVYLMSRPRKVYLVNFACYKPDNPSQMCSRKLFMQIASKIGIFSEETLSFHKKILERSGMGNMSYVPKAMLDNPAGEKNMAEARKETEGVIIGAIDELLDKTGVKPRDIGILVVNSSLFNPTPSLSAMVVNHYKLRGNILSYNLGGMGCSAGLISIDLAKQLLQV 675
            ++   +WN L+F+   +L     ++F STVY MS+PR +YLV+++CYKP    ++     FM+ +  I     +++ F  +ILERSG+G  + +P A+   P     M  AR E + VI  A+D+L  KTG+KP+D+ IL+VN SLF+PTPSLSAMV+N YKLR NI S+NL GMGCSAGLIS+DLA+ LLQV
Sbjct:   51 EEILNVWNSLQFDLVQVLCSSFFVIFISTVYFMSKPRTIYLVDYSCYKPPVTCRV-PFATFMEHSRLILKDKPKSVEFQMRILERSGLGEETCLPPAIHYIPP-TPTMDAARSEAQMVIFEAMDDLFKKTGLKPKDVDILIVNCSLFSPTPSLSAMVINKYKLRSNIKSFNLSGMGCSAGLISVDLARDLLQV 241          
BLAST of DY262559 vs. ExPASy Swiss-Prot
Match: KCS18_ARATH (3-ketoacyl-CoA synthase 18 OS=Arabidopsis thaliana GN=FAE1 PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 1.307e-42
Identity = 97/208 (46.63%), Postives = 134/208 (64.42%), Query Frame = 1
Query:   94 VDDFSKLWNELRFNFGTLLLCLVSLVFTSTVYLMSRPRKVYLVNFACYKPDNPSQMCSRK---LFMQI------ASKIGIFSEETLSFHKKILERSGMGNMSYVPKAMLDNPAGEKNMAEARKETEGVIIGAIDELLDKTGVKPRDIGILVVNSSLFNPTPSLSAMVVNHYKLRGNILSYNLGGMGCSAGLISIDLAKQLLQVCLHCY 690
            ++D     + L+ N  T+ L     VF   +Y+++RP  VYLV+++CY P    ++   K   +F QI      +  +      +L F +KI ERSG+G+ +Y P+ ++  P   K  A +R+ETE VIIGA++ L + T V PR+IGILVVNSS+FNPTPSLSAMVVN +KLR NI S+NLGGMGCSAG+I+IDLAK LL V  + Y
Sbjct:   38 INDLHNFLSYLQHNLITVTLLFAFTVFGLVLYIVTRPNPVYLVDYSCYLPPPHLKVSVSKVMDIFYQIRKADTSSRNVACDDPSSLDFLRKIQERSGLGDETYSPEGLIHVPP-RKTFAASREETEKVIIGALENLFENTKVNPREIGILVVNSSMFNPTPSLSAMVVNTFKLRSNIKSFNLGGMGCSAGVIAIDLAKDLLHVHKNTY 244          
BLAST of DY262559 vs. ExPASy Swiss-Prot
Match: KCS5_ARATH (3-ketoacyl-CoA synthase 5 OS=Arabidopsis thaliana GN=KCS5 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 4.648e-40
Identity = 90/193 (46.63%), Postives = 126/193 (65.28%), Query Frame = 1
Query:   97 DDFSKLWNELRFNFGTLLLCLVSLVFTSTVYLMSRPRKVYLVNFACYKPDNPSQMCSRKLFMQIASKIGIFSEETLSFHKKILERSGMGNMSYVPKAMLDNPAGEKNMAEARKETEGVIIGAIDELLDKTGVKPRDIGILVVNSSLFNPTPSLSAMVVNHYKLRGNILSYNLGGMGCSAGLISIDLAKQLLQV 675
            ++   + N L F    +L     ++F STVY MS+PR VYLV+++CYKP    ++     FM+ +  I   + +++ F  +ILERSG+G  + +P A+   P     M  AR E + VI  A+++L   TG+KP+DI IL+VN SLF+PTPSLSAM++N YKLR NI SYNL GMGCSA LIS+D+A+ LLQV
Sbjct:   46 EEILSVLNSLHFELLHILCSSFLIIFVSTVYFMSKPRTVYLVDYSCYKPPVTCRVPFSS-FMEHSRLILKDNPKSVEFQMRILERSGLGEETCLPPAIHYIPP-TPTMESARNEAQMVIFTAMEDLFKNTGLKPKDIDILIVNCSLFSPTPSLSAMIINKYKLRSNIKSYNLSGMGCSASLISVDVARDLLQV 236          
BLAST of DY262559 vs. ExPASy Swiss-Prot
Match: KCS13_ARATH (3-ketoacyl-CoA synthase 13 OS=Arabidopsis thaliana GN=HIC PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 3.013e-39
Identity = 83/180 (46.11%), Postives = 126/180 (70.00%), Query Frame = 1
Query:  151 LCLVSLVFTSTVYLMSRPRKVYLVNFACYKPDNPSQMCSRKLFMQIASKIGIFSEETLSFHKKILERSGMGNMSYVPKAMLDNPAGEKNMAEARKETEGVIIGAIDELLDKTGVKPRDIGILVVNSSLFNPTPSLSAMVVNHYKLRGNILSYNLGGMGCSAGLISIDLAKQLLQVCLHCY 690
            L L+S+ F +  Y  +R + VYLV+F+C++P +  ++ S + F  +A    ++++ET+ F  +IL RSG+G+ +Y P+ ML +P    +M EAR E+E VI GA++ L  KTG++PR++GI +VN SLFNP PSLS+M+VN YKL+ ++ +YNL GMGCSAG IS+DLA  LL+   + Y
Sbjct:   42 LLLISIFFYA--YSTTRSKPVYLVDFSCHQPTDSCKISS-ETFFNMAKGAQLYTDETIQFMTRILNRSGLGDDTYSPRCMLTSPP-TPSMYEARHESELVIFGALNSLFKKTGIEPREVGIFIVNCSLFNPNPSLSSMIVNRYKLKTDVKTYNLSGMGCSAGAISVDLATNLLKANPNTY 217          
BLAST of DY262559 vs. ExPASy Swiss-Prot
Match: KCS15_ARATH (3-ketoacyl-CoA synthase 15 OS=Arabidopsis thaliana GN=KCS15 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.828e-36
Identity = 81/178 (45.51%), Postives = 117/178 (65.73%), Query Frame = 1
Query:  136 FGTLLLCLVSLVFTSTVYLMSRPRKVYLVNFACYKPDNPSQMCSRKLFMQIASKIGIFSEETLSFHKKILERSGMGNMSYVPKAMLDNPAGEKNMAEARKETEGVIIGAIDELLDKTGVKPRDIGILVVNSSLFNPTPSLSAMVVNHYKLRGNILSYNLGGMGCSAGLISIDLAKQLL 669
            F  +L   +S  F   +Y    P  V+L++F+CY+P +  ++ ++  F+++A K G F+E  +   +K+L++SG+G  SY+P+ +   P    N+ + R+E   VI GAIDELL  T +  + I ILV+N  + N TPSLSAMV+NHYKLR N  SYNLGGMGCSAG+I+IDLAK LL
Sbjct:   63 FLPILAFPLSTFFILLIYHYLTPSSVFLLDFSCYRPPDHLKI-TKSDFIELAMKSGNFNETAIELQRKVLDQSGIGEESYMPRVVF-KPGHRVNLRDGREEAAMVIFGAIDELLAATKINVKHIKILVLNCGVLNTTPSLSAMVINHYKLRHNTESYNLGGMGCSAGVIAIDLAKDLL 238          
BLAST of DY262559 vs. ExPASy Swiss-Prot
Match: KCS14_ARATH (Probable 3-ketoacyl-CoA synthase 14 OS=Arabidopsis thaliana GN=KCS14 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.109e-33
Identity = 78/180 (43.33%), Postives = 120/180 (66.67%), Query Frame = 1
Query:  151 LCLVSLVFTSTVYLMSRPRKVYLVNFACYKPDNPSQMCSRKLFMQIASKIGIFSEETLSFHKKILERSGMGNMSYVPKAMLDNPAGEKNMAEARKETEGVIIGAIDELLDKTGVKPRDIGILVVNSSLFNPTPSLSAMVVNHYKLRGNILSYNLGGMGCSAGLISIDLAKQLLQVCLHCY 690
            L L+S+ F +  Y  +R + VYLV+F+C++P +  ++ S + F  +A    +++EET+ F  +IL RSG+G+ +Y P+ ML +P    +M EAR E+E VI GA++ L  KTG++PR++GI +VN SLFNP PSLS+M+VN YKL+ ++ +YNL G       IS+DLA  LL+   + Y
Sbjct:   42 LLLISIFFYA--YSTTRSKPVYLVDFSCHQPTDSCKISS-ETFFNMAKGAQLYTEETIQFMTRILNRSGLGDDTYSPRCMLTSPP-TPSMYEARHESELVIFGALNSLFKKTGIEPREVGIFIVNCSLFNPNPSLSSMIVNRYKLKTDVKTYNLSG-------ISVDLATNLLKANPNTY 210          
BLAST of DY262559 vs. ExPASy Swiss-Prot
Match: KCS20_ARATH (Probable 3-ketoacyl-CoA synthase 20 OS=Arabidopsis thaliana GN=KCS20 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.551e-27
Identity = 65/170 (38.24%), Postives = 109/170 (64.12%), Query Frame = 1
Query:  166 LVFTSTVYLMSRPR-KVYLVNFACYKPDNPSQMCSRKLFMQIASKIGIFSEETLSFHKKILERSGMGNMSYVPKAMLDNPAGEKNMAEARKETEGVIIGAIDELLDKTGVKPRDIGILVVNSSLFNPTPSLSAMVVNHYKLRGNILSYNLGGMGCSAGLISIDLAKQLLQ 672
            L+    +Y   R R KVYL++F CY+  + +++    L   I     +  +E++ F  +ILERS + N + +P+++++ P  +K+++  + ET   I  ++++LL K  + PR I IL+ N SL +P+PSLSAMV+N + +R NI S+NL GMGC+AG++S++LA  LLQ
Sbjct:   35 LLVVHLIYQRIRTRVKVYLLDFTCYRAPDSNRVPMSTLIETIYLDDKL-DQESIDFQARILERSWLSNQTSIPRSLMEIPL-KKSLSSVKIETMTTIFTSVEDLLRKNKLSPRSIDILITNCSLHSPSPSLSAMVINKFHMRSNIKSFNLSGMGCAAGILSVNLANDLLQ 202          
BLAST of DY262559 vs. ExPASy Swiss-Prot
Match: KCS7_ARATH (3-ketoacyl-CoA synthase 7 OS=Arabidopsis thaliana GN=KCS7 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 4.989e-26
Identity = 62/175 (35.43%), Postives = 112/175 (64.00%), Query Frame = 1
Query:  154 CLVSLVFTSTVYLMSRPRKV-YLVNFACYKPDNPSQMCSRKLFMQIASKIGIFSEETLSFHKKILERSGMGNMSYVPKAMLDNPAGEKNMAEARKETEGVIIGAIDELLDKTGVKPRDIGILVVNSSLFNPTPSLSAMVVNHYKLRGNILSYNLGGMGCSAGLISIDLAKQLLQV 675
            C++  VF    Y   +PR + YL++F+CY+P +  +      F++  +  G+F +E+L   +KILERSG+ + + VP  + + P    +++ AR+ET  ++   + +L  K  + P+ I ILV N SLF P+PS+++M++N + +R +I S++L GMGCSAG++S++L K L+++
Sbjct:   30 CVLIAVFG---YYFFKPRCIIYLIDFSCYQPPDFLRAPVSN-FIEHLTISGVFDQESLDLQQKILERSGISDDASVPATVHEIPPNA-SISAAREETHEILFAIVQDLFSKHEIDPKSIDILVSNCSLFCPSPSITSMIINKFGMRSDIKSFSLSGMGCSAGILSVNLVKDLMKI 199          
BLAST of DY262559 vs. ExPASy Swiss-Prot
Match: KCS21_ARATH (3-ketoacyl-CoA synthase 21 OS=Arabidopsis thaliana GN=KCS21 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 3.027e-23
Identity = 65/189 (34.39%), Postives = 106/189 (56.08%), Query Frame = 1
Query:  130 FNFGTLLLCLVSLVFTSTVYLMSR--PRKVYLVNFACYKPDNPSQMCSRKLFMQIASKIGIFSE----ETLSFHKKILERSGMGNMSYVPKAMLDNPAGEKNMAEARKETEGVIIGAIDELLDKT--GVKPRDIGILVVNSSLFNPTPSLSAMVVNHYKLRGNILSYNLGGMGCSAGLISIDLAKQLLQ 672
            F+  +LLL     VF    ++  R   R  Y++++ CYK      M  RKL  +  +K+   ++    E   F  + +  SG+G  +Y P+ +L+       + +A  E + ++   +D+L  KT   + P DI ILVVN SLF P+PSL++ V+N YK+R +I SYNL G+GCSA +ISID+ +++ +
Sbjct:    4 FSLSSLLLLSTLFVFYIFKFVFKRRNQRNCYMLHYECYKG-----MEERKLDTETCAKVVQRNKNLGLEEYRFLLRTMASSGIGEETYGPRNVLEGREDSPTLLDAHSEMDEIMFDTLDKLFHKTKGSISPSDIDILVVNVSLFAPSPSLTSRVINRYKMREDIKSYNLSGLGCSASVISIDIVQRMFE 187          
BLAST of DY262559 vs. ExPASy Swiss-Prot
Match: KCS12_ARATH (3-ketoacyl-CoA synthase 12 OS=Arabidopsis thaliana GN=KCS12 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 7.456e-22
Identity = 60/185 (32.43%), Postives = 104/185 (56.22%), Query Frame = 1
Query:  121 ELRFNFGTLLLCLVSLVFTSTVYLMSRPRK-VYLVNFACYKPDNPSQMCSRKLFMQIASKIGIFSEETLSFHKKILERSGMGNMSYVPKAMLDNPAGEKNMAEARKETEGVIIGAIDELLDKTGVKPRDIGILVVNSSLFNPTPSLSAMVVNHYKLRGNILSYNLGGMGCSAGLISIDLAKQLLQ 672
            +L F F +LLL    L F     + S+  K  Y++++ C+KP +  +M S +   +I  +          F  K +  SG+G  +Y P+ + +      ++ +   E E   + +I +LL++  + P+DI ILVVN S+ + TPSL++ ++NHYK+R ++  +NL GMGCSA LIS+D+ K + +
Sbjct:    2 DLLFLFFSLLLSY--LFFKIWKLIDSKQDKDCYILDYQCHKPTD-DRMVSTQFSGEIIYRNQNLGLTEYKFLLKAIVSSGIGEQTYAPRLVFEGREERPSLQDGISEMEEFYVDSIGKLLERNQISPKDIDILVVNVSMLSSTPSLASRIINHYKMRDDVKVFNLTGMGCSASLISVDIVKNIFK 183          
The following BLAST results are available for this feature:
BLAST of DY262559 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
KCS6_ARATH7.662e-4348.193-ketoacyl-CoA synthase 6 OS=Arabidopsis thaliana ... [more]
KCS18_ARATH1.307e-4246.633-ketoacyl-CoA synthase 18 OS=Arabidopsis thaliana... [more]
KCS5_ARATH4.648e-4046.633-ketoacyl-CoA synthase 5 OS=Arabidopsis thaliana ... [more]
KCS13_ARATH3.013e-3946.113-ketoacyl-CoA synthase 13 OS=Arabidopsis thaliana... [more]
KCS15_ARATH1.828e-3645.513-ketoacyl-CoA synthase 15 OS=Arabidopsis thaliana... [more]
KCS14_ARATH1.109e-3343.33Probable 3-ketoacyl-CoA synthase 14 OS=Arabidopsis... [more]
KCS20_ARATH1.551e-2738.24Probable 3-ketoacyl-CoA synthase 20 OS=Arabidopsis... [more]
KCS7_ARATH4.989e-2635.433-ketoacyl-CoA synthase 7 OS=Arabidopsis thaliana ... [more]
KCS21_ARATH3.027e-2334.393-ketoacyl-CoA synthase 21 OS=Arabidopsis thaliana... [more]
KCS12_ARATH7.456e-2232.433-ketoacyl-CoA synthase 12 OS=Arabidopsis thaliana... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA100BC07RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262559 ID=DY262559; Name=DY262559; organism=Citrus clementina; type=EST; length=1104bp
TTTCATTTGTTGGCTTCCGTTCATATACACTAGCTTCCGCTTTTAAATTT
TCTTCAGCTCCTGCAACTTCTATTACTACTTAAAACCCTAGCTGTTGATG
ATTTCTCCAAGCTATGGAACGAGCTCAGGTTCAACTTTGGGACACTGCTT
TTATGCTTGGTTTCTCTTGTATTTACATCGACCGTTTACCTAATGAGTCG
CCCGAGAAAAGTTTACTTGGTGAACTTTGCTTGTTACAAGCCTGACAATC
CATCTCAAATGTGCAGCCGAAAACTTTTCATGCAAATAGCGAGCAAAATT
GGGATATTTTCAGAGGAAACTTTATCCTTTCACAAGAAAATTCTAGAGAG
ATCCGGGATGGGGAATATGTCATACGTCCCGAAAGCCATGTTGGACAACC
CGGCGGGTGAGAAAAATATGGCGGAGGCAAGGAAGGAGACTGAGGGTGTA
ATAATCGGAGCAATCGATGAGCTCTTGGACAAAACTGGGGTGAAGCCTAG
AGATATTGGAATTCTTGTGGTGAACAGCAGCTTGTTTAATCCAACGCCAT
CTTTGTCAGCGATGGTTGTGAATCACTACAAGCTTAGAGGCAACATTTTG
AGCTATAATCTTGGTGGTATGGGTTGCAGTGCTGGTCTTATTTCTATCGA
CCTCGCCAAACAGCTTTTGCAGGTTTGCCTTCATTGTTATTTCTGTTATT
TACATTTCTCTAGTCTCTCAGAGTTCATGATAGTTAATTAATGTAATGAA
AAAATTGAGGAGTGTGACAAAATATTGGTGATCTATAGTATGCATTAATT
GATCTCCTCTCAGAGCTATTTAGAATTAATCAAATCATGTGGGTCATCGG
CACAACTGGTTGATAAACACACACCCCCCCGGGGGCCCGCCCCGCGGCGA
TGAATACGAATATTGATTGATTTAAAACAAATGTCTCAGTATATGGATGT
ATAGTTCATCCAGGCTTTTTTCCATAACGTTTAATGCTTCGCTGGTACTT
CGCAATACCAAAAGGAATTCTCCCTCCCAATATGTGTAAGGGAAAGAAAT
TTTTCTTGGATAAATTTTTAAAATATTTTTAATGGGGAATTACTTTTTTT
TTGG
back to top