DY262559

Overview
NameDY262559
Unique NameDY262559
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1104
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY262559 vs. ExPASy Swiss-Prot
Match: KCS3_ARATH (3-ketoacyl-CoA synthase 3 OS=Arabidopsis thaliana GN=KCS3 PE=2 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 2.169e-21
Identity = 57/182 (31.32%), Postives = 98/182 (53.85%), Query Frame = 1 
Query:  145 LLLCLVSLVFTSTVYLM------SRPRKVYLVNFACYKPDNPSQMCSRKLFMQIASKIGIFSEETLSFHKKILERSGMGNMSYVPKAMLDNPAGEKNMAEARKETEGVIIGAIDELLDKTGVKPRDIGILVVNSSLFNPTPSLSAMVVNHYKLRGNILSYNLGGMGCSAGLISIDLAKQLLQ 672
            LL+ L+SL+ +  ++ +       R +  Y++++ C+KP +  +M + +    I  +          F  K +  SG+G  +Y P+   +       + +   E E   I  I+++L +  + P +I ILVVN S+ N TPSLSA ++NHYK+R +I  +NL  MGCSA +ISID+ K + +
Sbjct:   46 LLVMLLSLLVSYLIFKIWKRIDSKRDQNCYILDYQCHKPSD-DRMVNTQFSGDIILRNKHLRLNEYKFLLKAIVSSGIGEQTYAPRLFFEGREQRPTLQDGLSEMEEFYIDTIEKVLKRNKISPSEIDILVVNVSMLNSTPSLSARIINHYKMREDIKVFNLTAMGCSASVISIDIVKNIFK 226
The following BLAST results are available for this feature:
BLAST of DY262559 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
KCS3_ARATH2.169e-2131.323-ketoacyl-CoA synthase 3 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100BC07RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262559 ID=DY262559; Name=DY262559; organism=Citrus clementina; type=EST; length=1104bp
TTTCATTTGTTGGCTTCCGTTCATATACACTAGCTTCCGCTTTTAAATTT
TCTTCAGCTCCTGCAACTTCTATTACTACTTAAAACCCTAGCTGTTGATG
ATTTCTCCAAGCTATGGAACGAGCTCAGGTTCAACTTTGGGACACTGCTT
TTATGCTTGGTTTCTCTTGTATTTACATCGACCGTTTACCTAATGAGTCG
CCCGAGAAAAGTTTACTTGGTGAACTTTGCTTGTTACAAGCCTGACAATC
CATCTCAAATGTGCAGCCGAAAACTTTTCATGCAAATAGCGAGCAAAATT
GGGATATTTTCAGAGGAAACTTTATCCTTTCACAAGAAAATTCTAGAGAG
ATCCGGGATGGGGAATATGTCATACGTCCCGAAAGCCATGTTGGACAACC
CGGCGGGTGAGAAAAATATGGCGGAGGCAAGGAAGGAGACTGAGGGTGTA
ATAATCGGAGCAATCGATGAGCTCTTGGACAAAACTGGGGTGAAGCCTAG
AGATATTGGAATTCTTGTGGTGAACAGCAGCTTGTTTAATCCAACGCCAT
CTTTGTCAGCGATGGTTGTGAATCACTACAAGCTTAGAGGCAACATTTTG
AGCTATAATCTTGGTGGTATGGGTTGCAGTGCTGGTCTTATTTCTATCGA
CCTCGCCAAACAGCTTTTGCAGGTTTGCCTTCATTGTTATTTCTGTTATT
TACATTTCTCTAGTCTCTCAGAGTTCATGATAGTTAATTAATGTAATGAA
AAAATTGAGGAGTGTGACAAAATATTGGTGATCTATAGTATGCATTAATT
GATCTCCTCTCAGAGCTATTTAGAATTAATCAAATCATGTGGGTCATCGG
CACAACTGGTTGATAAACACACACCCCCCCGGGGGCCCGCCCCGCGGCGA
TGAATACGAATATTGATTGATTTAAAACAAATGTCTCAGTATATGGATGT
ATAGTTCATCCAGGCTTTTTTCCATAACGTTTAATGCTTCGCTGGTACTT
CGCAATACCAAAAGGAATTCTCCCTCCCAATATGTGTAAGGGAAAGAAAT
TTTTCTTGGATAAATTTTTAAAATATTTTTAATGGGGAATTACTTTTTTT
TTGG
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