DY262560

Overview
NameDY262560
Unique NameDY262560
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1316
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262560 vs. ExPASy Swiss-Prot
Match: ATL2F_ARATH (RING-H2 finger protein ATL2F OS=Arabidopsis thaliana GN=ATL2F PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.480e-14
Identity = 34/78 (43.59%), Postives = 48/78 (61.54%), Query Frame = 1
Query:  262 AVTLRAGLDPAILRKIPVVAFNQQDFK----DGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCR 483
            ++T   GLD AI+   P   +++   +     G+ECAVC+ E ED E  RL+P+C H FH +C+ +W   HSTCPLCR
Sbjct:   61 SITAVRGLDEAIINSFPTFLYSEVKERRIGIGGVECAVCICEFEDHETLRLMPECCHVFHADCVSVWLSDHSTCPLCR 138          
BLAST of DY262560 vs. ExPASy Swiss-Prot
Match: ATL2E_ARATH (RING-H2 finger protein ATL2E OS=Arabidopsis thaliana GN=ATL2E PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.480e-14
Identity = 33/87 (37.93%), Postives = 51/87 (58.62%), Query Frame = 1
Query:  268 TLRAGLDPAILRKIPVVAFNQQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVERSNNGNGEP 528
            + R GLD   +R +PV  + +   +   +C +CLS+ E+GE  +++P C H FHV+C+D W  S+ TCPLCR+       + G  EP
Sbjct:  111 SFRRGLDSQAVRSLPVYRYTKAAKQRNEDCVICLSDFEEGETVKVIPHCGHVFHVDCVDTWLSSYVTCPLCRSNQLFSDKDLGMQEP 197          
BLAST of DY262560 vs. ExPASy Swiss-Prot
Match: ATL1N_ARATH (RING-H2 finger protein ATL1N OS=Arabidopsis thaliana GN=ATL1N PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 2.480e-14
Identity = 36/72 (50.00%), Postives = 46/72 (63.89%), Query Frame = 1
Query:  280 GLDPAILRKIPVVAFNQQDF----KDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCR 483
            GLD +I+   P   ++        K+ LEC+VCL+E ED E  RL+PKC H FH  CID W +SH+TCPLCR
Sbjct:  115 GLDASIIETFPTFQYSTVKTLRIGKEALECSVCLNEFEDDETLRLIPKCCHVFHPGCIDAWLRSHTTCPLCR 186          
BLAST of DY262560 vs. ExPASy Swiss-Prot
Match: ATL4K_ARATH (RING-H2 finger protein ATL4K OS=Arabidopsis thaliana GN=ATL4K PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 3.239e-14
Identity = 42/109 (38.53%), Postives = 66/109 (60.55%), Query Frame = 1
Query:  277 AGLDPAILRKIPVVAFNQQ-DFKD-GLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVERSNNGNGEPSVEIDIQNSQE--SLESGYSTDS 591
            +G+D + +  +PV  +      K+   +CAVCL E E  +K RLLPKC+H FH++CID W  SHSTCPLCR+ +  + S++ +   S  + ++++ +  S E G   DS
Sbjct:  106 SGVDQSFIDTLPVFHYKSIIGLKNYPFDCAVCLCEFETEDKLRLLPKCSHAFHMDCIDTWLLSHSTCPLCRSSLLSDLSSHQDPRSSFLLVLESASDHSSREIGGDRDS 214          
BLAST of DY262560 vs. ExPASy Swiss-Prot
Match: ATL1O_ARATH (RING-H2 finger protein ATL1O OS=Arabidopsis thaliana GN=ATL1O PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 3.239e-14
Identity = 38/99 (38.38%), Postives = 53/99 (53.54%), Query Frame = 1
Query:  280 GLDPAILRKIPVVAFNQQD-FKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVERSNNGNGEPSVEIDIQNSQESLES 573
            GL  +I+  I +  + + D   +  +C VCL+E E+ E  RLLPKCNH FH+ CID W  SH+ CPLCR  + +           VE+    S   LE+
Sbjct:  151 GLQQSIINSITICNYKRGDGLIERTDCPVCLNEFEEDESLRLLPKCNHAFHISCIDTWLSSHTNCPLCRAGIAMISVTTPRYSGPVEVTPGGSGSHLEN 249          
BLAST of DY262560 vs. ExPASy Swiss-Prot
Match: ATL1F_ARATH (RING-H2 finger protein ATL1F OS=Arabidopsis thaliana GN=ATL1F PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.230e-14
Identity = 37/94 (39.36%), Postives = 55/94 (58.51%), Query Frame = 1
Query:  280 GLDPAILRKIPVVAFNQQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVE-RSNNGNGEPSVEIDIQNSQ 558
            GLD  I+   P   ++ +D     +C++CL+E  D +  RL+  CNH FH  CID+WF+ H TCP+CR  +DVE R++        EID+  S+
Sbjct:  130 GLDSKIIESFPEYPYSVKDHGTD-QCSICLTEFMDDDTIRLISTCNHSFHTICIDLWFEGHKTCPVCRRELDVEDRTSLEKPLEVPEIDLVRSE 222          
BLAST of DY262560 vs. ExPASy Swiss-Prot
Match: ATL4I_ARATH (Putative RING-H2 finger protein ATL4I OS=Arabidopsis thaliana GN=ATL4I PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 5.525e-14
Identity = 47/137 (34.31%), Postives = 67/137 (48.91%), Query Frame = 1
Query:  253 QDPAVTLRAGLDPAILRKIPVVAFNQ----QDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVERSNNGNGEPSV-EIDIQNSQESLESGYSTDSPPNFPTNVLFWGNENLVSS 648
            Q  A  +  GL+  I+   P   ++     ++ K GLECA+CL E +     RLL  C H FH ECID+WF+SH TCP+CR  +D       N +P+V E+ I   QE+ +            T +  W +    SS
Sbjct:   72 QPEAPPVNPGLELRIINSFPTFPYSSVKDLREEKYGLECAICLLEFDGDHVLRLLTTCYHVFHQECIDLWFESHRTCPVCRRDLDPPPPPE-NTKPTVDEMIIDVIQETSDDEEDDHHRQQTTTQIDTWPSSGQTSS 207          
BLAST of DY262560 vs. ExPASy Swiss-Prot
Match: ATL2K_ARATH (RING-H2 finger protein ATL2K OS=Arabidopsis thaliana GN=ATL2K PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 7.216e-14
Identity = 32/74 (43.24%), Postives = 45/74 (60.81%), Query Frame = 1
Query:  274 RAGLDPAILRKIPVVAFNQQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVD 495
            + GLD  ++  +P      ++   G ECAVCLS LE+ + AR+LP C H FHV C+D W  + STCP+CR   +
Sbjct:   73 KRGLDSLVIASLPTFVVGIKNDVAGTECAVCLSLLEEKDNARMLPNCKHVFHVSCVDTWLTTQSTCPVCRTEAE 146          
BLAST of DY262560 vs. ExPASy Swiss-Prot
Match: ATL3J_ARATH (RING-H2 finger protein ATL3J OS=Arabidopsis thaliana GN=ATL3J PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 9.425e-14
Identity = 39/100 (39.00%), Postives = 57/100 (57.00%), Query Frame = 1
Query:  292 AILRKIPVVAFN----QQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNP-----------VDVERSNNGNGEPSVEIDI 546
            ++L  +P+  F+    +    +  +CAVCLS+ E  ++ RLLP C H FH +CID+W  S+ TCPLCR+P           + V  SNNG GE S  ++I
Sbjct:   92 SVLDSLPIFKFSSVTRRSSSMNSGDCAVCLSKFEPEDQLRLLPLCCHAFHADCIDIWLVSNQTCPLCRSPLFASESDLMKSLAVVGSNNGGGENSFRLEI 191          
BLAST of DY262560 vs. ExPASy Swiss-Prot
Match: ATL1H_ARATH (RING-H2 finger protein ATL1H OS=Arabidopsis thaliana GN=ATL1H PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.608e-13
Identity = 33/72 (45.83%), Postives = 45/72 (62.50%), Query Frame = 1
Query:  280 GLDPAILRKIPVVAFNQ----QDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCR 483
            GL   ++   P   ++Q    +  K G+ECA+CL+E ED E  RL+P C+H FH  CID+W  S STCP+CR
Sbjct:   99 GLGKDVINSFPSFLYSQVKGLKIGKGGVECAICLNEFEDEETLRLMPPCSHAFHASCIDVWLSSRSTCPVCR 170          
The following BLAST results are available for this feature:
BLAST of DY262560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
ATL2F_ARATH2.480e-1443.59RING-H2 finger protein ATL2F OS=Arabidopsis thalia... [more]
ATL2E_ARATH2.480e-1437.93RING-H2 finger protein ATL2E OS=Arabidopsis thalia... [more]
ATL1N_ARATH2.480e-1450.00RING-H2 finger protein ATL1N OS=Arabidopsis thalia... [more]
ATL4K_ARATH3.239e-1438.53RING-H2 finger protein ATL4K OS=Arabidopsis thalia... [more]
ATL1O_ARATH3.239e-1438.38RING-H2 finger protein ATL1O OS=Arabidopsis thalia... [more]
ATL1F_ARATH4.230e-1439.36RING-H2 finger protein ATL1F OS=Arabidopsis thalia... [more]
ATL4I_ARATH5.525e-1434.31Putative RING-H2 finger protein ATL4I OS=Arabidops... [more]
ATL2K_ARATH7.216e-1443.24RING-H2 finger protein ATL2K OS=Arabidopsis thalia... [more]
ATL3J_ARATH9.425e-1439.00RING-H2 finger protein ATL3J OS=Arabidopsis thalia... [more]
ATL1H_ARATH1.608e-1345.83RING-H2 finger protein ATL1H OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100BC08RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262560 ID=DY262560; Name=DY262560; organism=Citrus clementina; type=EST; length=1316bp
CTGGGTTTGTTTTGCTTCTAACGAAAAATGAGTGCCTCTGACGGTGATGA
AAATGGATTTAACAACACCGGTTCTCTTGAAATAACGGGACAAATCATGG
TGATAGCAATAATTGTTCTCTTTTTCGTAGTGGTCTTTATTCTGTTTCTT
CACCTGTACGCCAAGTGGTTCTGGTGGCGGATTGAGCAGACGCCGGAACC
TTCTCCCAGTCGTAGCCACCGCCGCCGCCGTCGTTTTGTCTTTGCTCCCG
GGCAGGACCCTGCTGTCACTCTCCGTGCTGGGCTTGATCCTGCAATCCTG
AGGAAAATCCCTGTGGTTGCATTCAACCAGCAGGACTTTAAAGATGGACT
TGAATGTGCAGTGTGCTTAAGCGAGCTTGAAGATGGAGAGAAAGCTAGGC
TGCTGCCGAAATGTAACCATGGGTTTCATGTTGAGTGCATTGACATGTGG
TTTCAGTCTCACTCAACTTGCCCTCTCTGTAGGAACCCCGTTGATGTTGA
ACGCTCAAACAATGGCAACGGTGAACCATCAGTGGAGATTGATATTCAGA
ATTCACAAGAAAGTTTGGAATCTGGGTACTCAACAGATTCACCTCCGAAT
TTCCCTACTAATGTGCTGTTCTGGGGAAATGAAAATCTGGTTAGCTCTGC
TGGTGTTTGCGTGCACGAGGGTGTTTCTTCATCATCATCTTCTTCTTCTT
CTTCTTCTTCTTCTTCTTCTACTGAGATGAATAATAGTCGGCGGGGTGCT
GAAATGTTGGTGATCGATATTCCTGTAAATAGTATGAGTGAGCATTTCTC
ATCATTGTCACCTGTCGAGGAAACAAAGTCGCCTATGACGACAAGATTGA
GGTCATTGAAGAGGCTTTTGAGTAGGGAGAAGAGGGTAAGTCCTTGTGGT
ACTACTGGTACTAGTAGTTCTTGTGATGTTGAACAAGTTAGTAGAGCATA
GATTTCATTTTCAGAGGCAGCTTTTTGTGCCTGAAGATGTGATGGTATAG
TATCTCCGCACATATTGGCCTAATGGTTTGAAAATGATTTCATTCTGGGA
AATCAAAAAACTTGTTGTTCTTCCTGGTGAAAAAGGCAAAGCACCTGGCT
CTATTTTTCTGTTTGAAAAACTTTTTCATTGATTGGTTGTGAAAAAAAAA
AAGTTTTCCCCGTTTTCTAAAAAACTAAAACAATTTTTTTCTTATTTCTT
TCTTTTTTTTGAAAAAAAAATTTTTTTTTAACATATTTAGGTTTTAAGGG
GGAAAAAGACTGGTTAAAAAACAAACCCCTTTAAAAAATTTAAAATTATA
TATATTTTTAGGAAAA
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