DY262560

Overview
NameDY262560
Unique NameDY262560
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1316
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262560 vs. ExPASy Swiss-Prot
Match: ATL5L_ARATH (Putative RING-H2 finger protein ATL5L OS=Arabidopsis thaliana GN=ATL5L PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 3.581e-13
Identity = 44/120 (36.67%), Postives = 66/120 (55.00%), Query Frame = 1
Query:  247 PGQDPAVTLRAGLDPAILRKIPVVAFNQ----QDFKDGLECAVCLSELEDGE-KARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVERSNNGNGEPSVEIDIQNSQESLESGYSTDS 591
            P Q P   +  GL+P I++  P+  F+     ++ K GLECA+CL E E+     RLL  C H FH ECID W +S+ TCP+CR  +D     N   E  +E+  +N+ E+ +   ++ S
Sbjct:   77 PVQPP---VNPGLEPHIIQSYPLFPFSSVKDLREDKYGLECAICLLEFEEEHILLRLLTTCYHVFHQECIDQWLESNKTCPVCRRNLDPNAPENIK-ELIIEVIQENAHENRDQEQTSTS 192          
BLAST of DY262560 vs. ExPASy Swiss-Prot
Match: ATL3I_ARATH (RING-H2 finger protein ATL3I OS=Arabidopsis thaliana GN=ATL3I PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 4.677e-13
Identity = 33/71 (46.48%), Postives = 44/71 (61.97%), Query Frame = 1
Query:  277 AGLDPAILRKIPVVAFNQQ--DFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCR 483
            +GLD   +  +PV  +       +   +CAVCL+E  D +K RLLP C+H FH+ CID W  S+STCPLCR
Sbjct:  179 SGLDQTAIDALPVFLYGNVTISLEQPFDCAVCLNEFSDTDKLRLLPVCSHAFHLHCIDTWLLSNSTCPLCR 249          
BLAST of DY262560 vs. ExPASy Swiss-Prot
Match: ATL2L_ARATH (RING-H2 finger protein ATL2L OS=Arabidopsis thaliana GN=ATL2L PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 4.677e-13
Identity = 33/76 (43.42%), Postives = 46/76 (60.53%), Query Frame = 1
Query:  274 RAGLDPAILRKIPVVAFNQQD--FKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVD 495
            + GL+P ++  +P       D       ECAVCLS L++ +KAR LP C H FHV+C+D W  + STCP+CR  V+
Sbjct:   79 KRGLNPTVIASLPTFTVGATDGVAASATECAVCLSVLKEQDKARELPNCKHIFHVDCVDTWLTTCSTCPVCRTEVE 154          
BLAST of DY262560 vs. ExPASy Swiss-Prot
Match: ATL4B_ARATH (Putative RING-H2 finger protein ATL4B OS=Arabidopsis thaliana GN=ATL4B PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 6.109e-13
Identity = 36/100 (36.00%), Postives = 54/100 (54.00%), Query Frame = 1
Query:  274 RAGLDPAILRKIPVVAFNQ----QDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVERSNNGNGEPSVEIDIQNSQE 561
            R GL+  ++   P+  +++    +  K G+ECA+CLSE  D E  R +P C+H FH  CID+W  S STCP CR  + ++    G   P    D++   E
Sbjct:   92 RRGLEKELVESFPIFLYSEVKGLKIGKGGVECAICLSEFVDKETLRWMPPCSHTFHANCIDVWLSSQSTCPACRANLSLK---PGESYPYPITDLETGNE 188          
BLAST of DY262560 vs. ExPASy Swiss-Prot
Match: ATL1C_ARATH (RING-H2 finger protein ATL1C OS=Arabidopsis thaliana GN=ATL1C PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 6.109e-13
Identity = 34/76 (44.74%), Postives = 45/76 (59.21%), Query Frame = 1
Query:  268 TLRAGLDPAILRKIPVVAFNQQDF----KDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCR 483
            T   GLD +++   P   ++        K+ LEC VCL+E ED E  RL+P+C H FH  CID W +S +TCPLCR
Sbjct:   85 TTEPGLDASVIETFPTFPYSTVKTLRIGKEALECPVCLNEFEDDETLRLIPQCCHVFHPGCIDAWLRSQTTCPLCR 160          
BLAST of DY262560 vs. ExPASy Swiss-Prot
Match: ATL1L_ARATH (RING-H2 finger protein ATL1L OS=Arabidopsis thaliana GN=ATL1L PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 7.978e-13
Identity = 34/78 (43.59%), Postives = 46/78 (58.97%), Query Frame = 1
Query:  259 PAVTLRAGLDPAILRKIPVVAFNQQDFKDGL--ECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRN 486
            P      G+    L+    V+++ +    GL  ECA+CLSE    E+ +LLP C+HGFHV CID W  SHS+CP CR+
Sbjct:   97 PVRLTNTGVKRKALKSFQTVSYSTELNLPGLDTECAICLSEFVAEERVKLLPTCHHGFHVRCIDKWLSSHSSCPTCRH 174          
BLAST of DY262560 vs. ExPASy Swiss-Prot
Match: ATL5I_ARATH (RING-H2 finger protein ATL5I OS=Arabidopsis thaliana GN=ATL5I PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.042e-12
Identity = 35/80 (43.75%), Postives = 46/80 (57.50%), Query Frame = 1
Query:  277 AGLDPAILRKIPVVAFNQQDFKDG-----------LECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCR 483
            +GLD A +  +PV  + +     G            +CAVCL E  + +K RLLP C+H FH+ CID W QS+STCPLCR
Sbjct:  106 SGLDQAFIDALPVFHYKEIVGSAGGGGGNGAAQEPFDCAVCLCEFSEKDKLRLLPMCSHAFHLNCIDTWLQSNSTCPLCR 185          
BLAST of DY262560 vs. ExPASy Swiss-Prot
Match: ATL2A_ARATH (RING-H2 finger protein ATL2A OS=Arabidopsis thaliana GN=ATL2A PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.042e-12
Identity = 35/88 (39.77%), Postives = 46/88 (52.27%), Query Frame = 1
Query:  343 DGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVERSNNGNGEPSVEIDIQNSQESLESGYSTDSPPNFP 606
            D  ECA+CL++  DGE+ R+LP C H FHVECID W  S S+CP CR  +   R +      + E+  Q  +       ST  P   P
Sbjct:   98 DSTECAICLTDFADGEEIRVLPLCGHSFHVECIDKWLVSRSSCPSCRRILTPVRCDRCGHASTAEMKDQAHRHQHHQHSSTTIPTFLP 185          
BLAST of DY262560 vs. ExPASy Swiss-Prot
Match: RN167_RAT (E3 ubiquitin-protein ligase RNF167 OS=Rattus norvegicus GN=Rnf167 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.361e-12
Identity = 40/108 (37.04%), Postives = 59/108 (54.63%), Query Frame = 1
Query:  298 LRKIPVVAFNQQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWF-QSHSTCPLCRNPVDVERSNNGNGEPSVEIDIQNSQESLESGYSTDSPPNFPTNVL 618
            L++IP   + + D  D   CA+CL E EDG+K R+LP C H +H  C+D W  Q+  TCP+C+ PV     + G G+   E + Q  +E  + G   D P +  T +L
Sbjct:  213 LKQIPTHDYQKGDEYD--VCAICLDEYEDGDKLRILP-CAHAYHSRCVDPWLTQTRKTCPICKQPV-----HRGPGDEEQEEETQGQEEEGDEGEPRDQPASEWTPLL 312          
BLAST of DY262560 vs. ExPASy Swiss-Prot
Match: ATL5N_ARATH (Putative RING-H2 finger protein ATL5N OS=Arabidopsis thaliana GN=ATL5N PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.960e-12
Identity = 44/114 (38.60%), Postives = 61/114 (53.51%), Query Frame = 1
Query:  277 AGLDPAILRKIPVVAFN-----QQDFKDGLECAVCLSELEDGEKARLLPKCNHGFHVECIDMWFQSHSTCPLCRNPVDVERSNNGNGEPSV-----EIDIQNSQESLESGYSTD 588
            A +D + +  +P++ +      + D  D   CAVCL E    ++ RLLPKC+H FHVECID W  ++STCPLCR+ + +     G    S      E D  NSQ+S  S   TD
Sbjct:   94 AEIDQSFIDALPLLHYKTMIGLRHDLSD---CAVCLREFTAEDELRLLPKCSHAFHVECIDTWLLTNSTCPLCRDNL-LLLGLTGTASSSTIVLVHESDGDNSQDSDSSFMLTD 203          
The following BLAST results are available for this feature:
BLAST of DY262560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
ATL5L_ARATH3.581e-1336.67Putative RING-H2 finger protein ATL5L OS=Arabidops... [more]
ATL3I_ARATH4.677e-1346.48RING-H2 finger protein ATL3I OS=Arabidopsis thalia... [more]
ATL2L_ARATH4.677e-1343.42RING-H2 finger protein ATL2L OS=Arabidopsis thalia... [more]
ATL4B_ARATH6.109e-1336.00Putative RING-H2 finger protein ATL4B OS=Arabidops... [more]
ATL1C_ARATH6.109e-1344.74RING-H2 finger protein ATL1C OS=Arabidopsis thalia... [more]
ATL1L_ARATH7.978e-1343.59RING-H2 finger protein ATL1L OS=Arabidopsis thalia... [more]
ATL5I_ARATH1.042e-1243.75RING-H2 finger protein ATL5I OS=Arabidopsis thalia... [more]
ATL2A_ARATH1.042e-1239.77RING-H2 finger protein ATL2A OS=Arabidopsis thalia... [more]
RN167_RAT1.361e-1237.04E3 ubiquitin-protein ligase RNF167 OS=Rattus norve... [more]
ATL5N_ARATH3.960e-1238.60Putative RING-H2 finger protein ATL5N OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100BC08RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262560 ID=DY262560; Name=DY262560; organism=Citrus clementina; type=EST; length=1316bp
CTGGGTTTGTTTTGCTTCTAACGAAAAATGAGTGCCTCTGACGGTGATGA
AAATGGATTTAACAACACCGGTTCTCTTGAAATAACGGGACAAATCATGG
TGATAGCAATAATTGTTCTCTTTTTCGTAGTGGTCTTTATTCTGTTTCTT
CACCTGTACGCCAAGTGGTTCTGGTGGCGGATTGAGCAGACGCCGGAACC
TTCTCCCAGTCGTAGCCACCGCCGCCGCCGTCGTTTTGTCTTTGCTCCCG
GGCAGGACCCTGCTGTCACTCTCCGTGCTGGGCTTGATCCTGCAATCCTG
AGGAAAATCCCTGTGGTTGCATTCAACCAGCAGGACTTTAAAGATGGACT
TGAATGTGCAGTGTGCTTAAGCGAGCTTGAAGATGGAGAGAAAGCTAGGC
TGCTGCCGAAATGTAACCATGGGTTTCATGTTGAGTGCATTGACATGTGG
TTTCAGTCTCACTCAACTTGCCCTCTCTGTAGGAACCCCGTTGATGTTGA
ACGCTCAAACAATGGCAACGGTGAACCATCAGTGGAGATTGATATTCAGA
ATTCACAAGAAAGTTTGGAATCTGGGTACTCAACAGATTCACCTCCGAAT
TTCCCTACTAATGTGCTGTTCTGGGGAAATGAAAATCTGGTTAGCTCTGC
TGGTGTTTGCGTGCACGAGGGTGTTTCTTCATCATCATCTTCTTCTTCTT
CTTCTTCTTCTTCTTCTTCTACTGAGATGAATAATAGTCGGCGGGGTGCT
GAAATGTTGGTGATCGATATTCCTGTAAATAGTATGAGTGAGCATTTCTC
ATCATTGTCACCTGTCGAGGAAACAAAGTCGCCTATGACGACAAGATTGA
GGTCATTGAAGAGGCTTTTGAGTAGGGAGAAGAGGGTAAGTCCTTGTGGT
ACTACTGGTACTAGTAGTTCTTGTGATGTTGAACAAGTTAGTAGAGCATA
GATTTCATTTTCAGAGGCAGCTTTTTGTGCCTGAAGATGTGATGGTATAG
TATCTCCGCACATATTGGCCTAATGGTTTGAAAATGATTTCATTCTGGGA
AATCAAAAAACTTGTTGTTCTTCCTGGTGAAAAAGGCAAAGCACCTGGCT
CTATTTTTCTGTTTGAAAAACTTTTTCATTGATTGGTTGTGAAAAAAAAA
AAGTTTTCCCCGTTTTCTAAAAAACTAAAACAATTTTTTTCTTATTTCTT
TCTTTTTTTTGAAAAAAAAATTTTTTTTTAACATATTTAGGTTTTAAGGG
GGAAAAAGACTGGTTAAAAAACAAACCCCTTTAAAAAATTTAAAATTATA
TATATTTTTAGGAAAA
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