DY262594

Overview
NameDY262594
Unique NameDY262594
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1283
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262594 vs. ExPASy Swiss-Prot
Match: PP144_ARATH (Pentatricopeptide repeat-containing protein At2g02750 OS=Arabidopsis thaliana GN=PCMP-E22 PE=2 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 6.286e-23
Identity = 63/200 (31.50%), Postives = 108/200 (54.00%), Query Frame = 1
Query:  376 PDKFTLPFVIKSCVGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTD-RDIVAWNNLISGYARLGQMKKARMLFDKMPYTTI----VSWTAMILGYAHIGSYAEALDVFRQMQIVGIEPDEISIVPILPACAQLGSLELGEWIHMYCDKKSLLRRTVICNALIEMYIKCGCXHQASQLFDQ 960
            P+  T    I +C  LL    G+Q+H  V K   +  ++   AL+D+Y KC     A+ VF E+ D R++++WN++ISG    GQ + A  LF+K+    +     +W ++I G++ +G   EA   F +M  V + P    +  +L AC+ + +L+ G+ IH +  K +  R   +  +LI+MY+KCG    A ++FD+
Sbjct:  229 PNDVTFVNAITACASLLNLQYGRQLHGLVMKKEFQFETMVGTALIDMYSKCRCWKSAYIVFTELKDTRNLISWNSVISGMMINGQHETAVELFEKLDSEGLKPDSATWNSLISGFSQLGKVIEAFKFFERMLSVVMVPSLKCLTSLLSACSDIWTLKNGKEIHGHVIKAAAERDIFVLTSLIDMYMKCGLSSWARRIFDR 428          

HSP 2 Score: 72.7886 bits (177), Expect = 4.993e-12
Identity = 46/166 (27.71%), Postives = 85/166 (51.20%), Query Frame = 1
Query:  472 GLKSHSITENALLDLYGKCDELIEAHKV-FEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKMPYTTIVSWTAMILGYAHIGSYAEALDVFRQMQ-IVGIEPDEISIVPILPACAQLGSLELGEWIHMYCDKKSLLRRTVICNALIEMYIKCGCXHQASQLFDQM 963
            G   +S+T  ++L   G  +  ++ H +  +   + ++    +L+S Y+R G+   A  +F+K+P+ ++V++ A I G    G       VF  M+     EP++++ V  + ACA L +L+ G  +H    KK     T++  ALI+MY KC C   A  +F ++
Sbjct:  127 GSGMNSVTVASVLGGCGDIEGGMQLHCLAMKSGFEMEVYVGTSLVSMYSRCGEWVLAARMFEKVPHKSVVTYNAFISGLMENGVMNLVPSVFNLMRKFSSEEPNDVTFVNAITACASLLNLQYGRQLHGLVMKKEFQFETMVGTALIDMYSKCRCWKSAYIVFTEL 292          
BLAST of DY262594 vs. ExPASy Swiss-Prot
Match: PP185_ARATH (Pentatricopeptide repeat-containing protein At2g35030, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E15 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.389e-22
Identity = 58/157 (36.94%), Postives = 91/157 (57.96%), Query Frame = 1
Query:  490 ITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKMPYTTIVSWTAMILGYAHIGSYAEALDVFRQMQIVG-IEPDEISIVPILPACAQLGSLELGEWIHMYCDKKSLLRRTVICNALIEMYIKCGCXHQASQLFD 957
            I+ NA++  Y + + + EA ++F+ M +RD  +WN +I+G+ R  +M KA  LFD+MP   ++SWT MI GY       EAL+VF +M   G ++P+  + V IL AC+ L  L  G+ IH    K    +  ++ +AL+ MY K G    A ++FD
Sbjct:  234 ISWNAMITGYAQNNRIDEADQLFQVMPERDFASWNTMITGFIRNREMNKACGLFDRMPEKNVISWTTMITGYVENKENEEALNVFSKMLRDGSVKPNVGTYVSILSACSDLAGLVEGQQIHQLISKSVHQKNEIVTSALLNMYSKSGELIAARKMFD 390          

HSP 2 Score: 82.8037 bits (203), Expect = 4.824e-15
Identity = 49/166 (29.52%), Postives = 89/166 (53.61%), Query Frame = 1
Query:  478 KSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKMPYTTIVSWTAMILGYAHIGSYAEALDVFRQMQIVGIEPDEISIVPILPACAQLGSLELGEWIHMYCDKKSLLRRTVICNALIEMYIKCGCXHQASQLFDQMVKRD 975
            + + +T  A++  Y +  +L  A  +F+EM +R++V+WN +I GYA+ G++ KA  LFD+MP   IVSW +M+      G   EA+++F +M       D +S   ++   A+ G ++    +     ++++    +  NA+I  Y +     +A QLF  M +RD
Sbjct:  106 RKNVVTWTAMVSGYLRSKQLSIAEMLFQEMPERNVVSWNTMIDGYAQSGRIDKALELFDEMPERNIVSWNSMVKALVQRGRIDEAMNLFERMP----RRDVVSWTAMVDGLAKNGKVDEARRLFDCMPERNI----ISWNAMITGYAQNNRIDEADQLFQVMPERD 263          

HSP 3 Score: 78.5666 bits (192), Expect = 9.099e-14
Identity = 46/153 (30.07%), Postives = 89/153 (58.17%), Query Frame = 1
Query:  523 KCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKM-PYTTIVSWTAMILGYAHIGSYAEALDVFRQMQIVGIEPDEISIVPILPACAQLGSLELGEWIHMYCDKKSLLRRTVICNALIEMYIKCGCXHQASQLFDQMVKRDV 978
            K  ++ EA K+F+ + +RD+V W ++I+GY +LG M++AR LFD++     +V+WTAM+ GY      + A  +F++M     E + +S   ++   AQ G ++  + + ++ +     R  V  N++++  ++ G   +A  LF++M +RDV
Sbjct:   58 KVGKIAEARKLFDGLPERDVVTWTHVITGYIKLGDMREARELFDRVDSRKNVVTWTAMVSGYLRSKQLSIAEMLFQEMP----ERNVVSWNTMIDGYAQSGRID--KALELFDEMPE--RNIVSWNSMVKALVQRGRIDEAMNLFERMPRRDV 202          
BLAST of DY262594 vs. ExPASy Swiss-Prot
Match: PP227_ARATH (Putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H85 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.120e-22
Identity = 64/199 (32.16%), Postives = 101/199 (50.75%), Query Frame = 1
Query:  376 PDKFTLPFVIKSCVGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKMPYTTIVSWTAMILGYAHIGSYAEALDVFRQMQIVGIEPDEISIVPILPACAQLGSLELGEWIHMYCDKKSLLRRTVICNALIEMYIKCGCXHQASQLFDQMVKR 972
            P++FT   V+ SC+      LGKQIH  + K+   SH    ++LLD+Y K                                GQ+K+AR +F+ +P   +VS TA+I GYA +G   EAL++F ++   G+ P+ ++   +L A + L  L+ G+  H +  ++ L    V+ N+LI+MY KCG    A +LFD M +R
Sbjct:  151 PNEFTFATVLTSCIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKA-------------------------------GQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYARRLFDNMPER 318          

HSP 2 Score: 85.5001 bits (210), Expect = 7.443e-16
Identity = 55/193 (28.50%), Postives = 89/193 (46.11%), Query Frame = 1
Query:  400 VIKSCVGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKMPYTTIVSWTAMILGYAHIGSYAEALDVFRQMQIVGIEPDEISIVPILPACAQLGSLELGEWIHMYCDKKSLLRRTVICNALIEMYIKCGCXHQASQLFDQMVKRDV 978
            ++ +C+       G+++HAH+ K      +     LL  YGKCD L +A KV                                D+MP   +VSWTAMI  Y+  G  +EAL VF +M     +P+E +   +L +C +   L LG+ IH    K +      + ++L++MY K G   +A ++F+ + +RDV
Sbjct:   58 LLNACLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVL-------------------------------DEMPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDV 219          
BLAST of DY262594 vs. ExPASy Swiss-Prot
Match: PP223_ARATH (Putative pentatricopeptide repeat-containing protein At3g11460 OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.120e-22
Identity = 71/279 (25.45%), Postives = 116/279 (41.58%), Query Frame = 1
Query:  343 LYNPRAGSLILPDKFTLPFVIKSCVGLLCPSLGKQIHAHV-------------------CKFGLKSH--------------SITENALLDLYGKCDELIEAHKVFEEMT---------------------------------------DRDIVAWNNLISGYARLGQMKKARMLFDKMPYTTIVSWTAMILGYAHIGSYAEALDVFRQMQIVGIEPDEISIVPILPACAQLGSLELGEWIHMYCDKKSLLRRTVICNALIEMYIKCGCXHQASQLFDQM 963
            LY     S   PD F+ PF++KSC  L  P  G+Q+H HV                   CK GL +               S+  NAL+  Y    ++ +A  +F  M                                        D ++   N+ I+ Y + G ++  R LFD+MP   +++W A+I GY+  G   + L+++ QM+  G+ PD  ++V +L +CA LG+ ++G  +    +    +    + NA I MY +CG   +A  +FD M
Sbjct:   40 LYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVTKGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTDAAYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSFITMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGHEVGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIM 318          
BLAST of DY262594 vs. ExPASy Swiss-Prot
Match: PPR88_ARATH (Pentatricopeptide repeat-containing protein At1g62260, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E10 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 3.817e-22
Identity = 59/165 (35.76%), Postives = 97/165 (58.79%), Query Frame = 1
Query:  487 SITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKMPYTTIVSWTAMILGYAHIGSYAEALDVFRQMQIVGIEPDEISIVPILPACAQLGSLELGEWIHMYCDKKSLLRRTVICNALIEMYIKCGCXHQASQLFDQM-VKRDV 978
            +I+ N ++D Y     + +A  +F EM +RD  +WN ++SGYA +G ++ AR  F+K P    VSW ++I  Y     Y EA+D+F +M I G +PD  ++  +L A   L +L LG  +H     K+++    + NALI MY +CG   ++ ++FD+M +KR+V
Sbjct:  312 TISWNTMIDGYVHVSRMEDAFALFSEMPNRDAHSWNMMVSGYASVGNVELARHYFEKTPEKHTVSWNSIIAAYEKNKDYKEAVDLFIRMNIEGEKPDPHTLTSLLSASTGLVNLRLGMQMHQIV-VKTVIPDVPVHNALITMYSRCGEIMESRRIFDEMKLKREV 475          

HSP 2 Score: 20.4014 bits (41), Expect = 3.817e-22
Identity = 6/13 (46.15%), Postives = 9/13 (69.23%), Query Frame = 3
Query:  966 KERCVSWSTMIGG 1004
            K   ++W+ MIGG
Sbjct:  472 KREVITWNAMIGG 484          

HSP 3 Score: 78.5666 bits (192), Expect = 9.099e-14
Identity = 61/213 (28.64%), Postives = 93/213 (43.66%), Query Frame = 1
Query:  478 KSHSITENALLDLYGKCDE---LIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKMPYTTIVSWTAMILGYAHIGSYAEALDVFRQMQIVGIEPDEISIVPILP---------ACAQLGSLELG--EWIHMY--------------------------CD-------KKSLLRRTVICNALIEMYIKCGCXHQASQLFDQMVKRD 975
            K   +T N ++  Y  C     L EA K+F+EM  RD  +WN +ISGYA+  ++ +A +LF+KMP    VSW+AMI G+   G    A+ +FR+M +    P    +  ++             Q GSL  G  + ++ Y                          C        ++   +  V  N++I+ Y+K G    A  LFDQM  RD
Sbjct:   99 KRDVVTWNTMISGYVSCGGIRFLEEARKLFDEMPSRDSFSWNTMISGYAKNRRIGEALLLFEKMPERNAVSWSAMITGFCQNGEVDSAVVLFRKMPVKDSSPLCALVAGLIKNERLSEAAWVLGQYGSLVSGREDLVYAYNTLIVGYGQRGQVEAARCLFDQIPDLCGDDHGGEFRERFCKNVVSWNSMIKAYLKVGDVVSARLLFDQMKDRD 311          

HSP 4 Score: 72.7886 bits (177), Expect = 4.993e-12
Identity = 45/139 (32.37%), Postives = 74/139 (53.24%), Query Frame = 1
Query:  376 PDKFTLPFVIKSCVGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEM-TDRDIVAWNNLISGYARLGQMKKARMLFDKMP----YTTIVSWTAMILGYAHIGSYAEALDVF-RQMQIVGIEP 774
            PD  TL  ++ +  GL+   LG Q+H  V K  +    +  NAL+ +Y +C E++E+ ++F+EM   R+++ WN +I GYA  G   +A  LF  M     Y + +++ +++   AH G   EA   F   M +  IEP
Sbjct:  407 PDPHTLTSLLSASTGLVNLRLGMQMHQIVVKTVIPDVPV-HNALITMYSRCGEIMESRRIFDEMKLKREVITWNAMIGGYAFHGNASEALNLFGSMKSNGIYPSHITFVSVLNACAHAGLVDEAKAQFVSMMSVYKIEP 544          

HSP 5 Score: 72.0182 bits (175), Expect = 8.516e-12
Identity = 38/93 (40.86%), Postives = 55/93 (59.14%), Query Frame = 1
Query:  484 HSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQ---MKKARMLFDKMPYTTIVSWTAMILGYAHIGSYAEALDVFRQM 753
            +++T N ++  Y K  E+ +A K+F+ M  RD+V WN +ISGY   G    +++AR LFD+MP     SW  MI GYA      EAL +F +M
Sbjct:   70 NTVTWNTMISGYVKRREMNQARKLFDVMPKRDVVTWNTMISGYVSCGGIRFLEEARKLFDEMPSRDSFSWNTMISGYAKNRRIGEALLLFEKM 162          

HSP 6 Score: 69.3218 bits (168), Expect = 5.520e-11
Identity = 35/99 (35.35%), Postives = 61/99 (61.62%), Query Frame = 1
Query:  538 IEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKMPYTT-IVSWTAMILGYAHIGSYAEALDVFRQMQIVGIEPDEISIVPILPACAQLGSLE 831
            ++ H++  +    D+   N LI+ Y+R G++ ++R +FD+M     +++W AMI GYA  G+ +EAL++F  M+  GI P  I+ V +L ACA  G ++
Sbjct:  429 MQMHQIVVKTVIPDVPVHNALITMYSRCGEIMESRRIFDEMKLKREVITWNAMIGGYAFHGNASEALNLFGSMKSNGIYPSHITFVSVLNACAHAGLVD 527          
BLAST of DY262594 vs. ExPASy Swiss-Prot
Match: PP431_ARATH (Pentatricopeptide repeat-containing protein At5g55740, chloroplastic OS=Arabidopsis thaliana GN=CRR21 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.075e-22
Identity = 61/203 (30.05%), Postives = 97/203 (47.78%), Query Frame = 1
Query:  370 ILPDKFTLPFVIKSCVGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKMPYTTIVSWTAMILGYAHIGSYAEALDVFRQMQIVGIEPDEISIVPILPACAQLGSLELGEWIHMYCDKKSLLRRTVICNALIEMYIKCGCXHQASQLFDQMVKRDV 978
            I PD F +P V K+C  L     G+ +H +V K GL+      ++L D+YGKC  L +A KVF+E+ DR+ VAWN L+ GY + G+ +                               EA+ +F  M+  G+EP  +++   L A A +G +E G+  H       +    ++  +L+  Y K G    A  +FD+M ++DV
Sbjct:  169 IFPDNFVVPNVCKACGALKWSRFGRGVHGYVVKSGLEDCVFVASSLADMYGKCGVLDDASKVFDEIPDRNAVAWNALMVGYVQNGKNE-------------------------------EAIRLFSDMRKQGVEPTRVTVSTCLSASANMGGVEEGKQSHAIAIVNGMELDNILGTSLLNFYCKVGLIEYAEMVFDRMFEKDV 340          

HSP 2 Score: 100.523 bits (249), Expect = 2.236e-20
Identity = 60/213 (28.17%), Postives = 102/213 (47.89%), Query Frame = 1
Query:  436 LGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYA-----------------------------------RLGQMKKARMLFDKMPYT----TIVSWTAMILGYAHIGSYAEALDVFRQMQIVGIEPDEISIVPILPACAQLGSLELGEWIHMYCDKKSLLRRTV-ICNALIEMYIKCGCXHQASQLF 954
            LGK++  +  +   +S  +  + ++D+Y KC  +++A KVF+   ++D++ WN L++ YA                                   R GQ+ +A+ +F +M  +     ++SWT M+ G    G   EA+   R+MQ  G+ P+  SI   L ACA L SL +G  IH Y  +       V I  +L++MY KCG  ++A ++F
Sbjct:  393 LGKEVQCYCIRHSFESDIVLASTVMDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAYAESGLSGEALRLFYGMQLEGVPPNVITWNLIILSLLRNGQVDEAKDMFLQMQSSGIIPNLISWTTMMNGMVQNGCSEEAILFLRKMQESGLRPNAFSITVALSACAHLASLHIGRTIHGYIIRNLQHSSLVSIETSLVDMYAKCGDINKAEKVF 605          

HSP 3 Score: 69.3218 bits (168), Expect = 5.520e-11
Identity = 55/192 (28.65%), Postives = 82/192 (42.71%), Query Frame = 1
Query:  400 VIKSCVGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKMPYTTIVSWTAMILGYAHIGSYAEALDVFRQMQIVGIEPDEISIVPILPACAQLGSLELGEWIHMYCDKKSLLRRTVICNALIEMYIKCGCXHQASQLFDQMVKRD 975
            +++ CV     S GKQIHA + K G            D Y + +E IE                  L+  YA+   ++ A +LF K+    + SW A+I     IG    AL  F +M    I PD   +  +  AC  L     G  +H Y  K  L     + ++L +MY KCG    AS++FD++  R+
Sbjct:   76 ILQGCVYERDLSTGKQIHARILKNG------------DFYAR-NEYIET----------------KLVIFYAKCDALEIAEVLFSKLRVRNVFSWAAIIGVKCRIGLCEGALMGFVEMLENEIFPDNFVVPNVCKACGALKWSRFGRGVHGYVVKSGLEDCVFVASSLADMYGKCGVLDDASKVFDEIPDRN 238          
BLAST of DY262594 vs. ExPASy Swiss-Prot
Match: PP350_ARATH (Pentatricopeptide repeat-containing protein At4g35130, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H27 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 5.322e-22
Identity = 70/225 (31.11%), Postives = 111/225 (49.33%), Query Frame = 1
Query:  307 FIYCYFIVTCR*LYNPRAGSLILPDKFTLPFVIKSCVGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKMPYTTIVSWTAMILGYAHIGSYAEALDVFRQMQIVGIEPDEISIVPILPACAQLGSLELGEWIHMYCDKKSLLRRTV-ICNALIEMYIKCGCXHQASQLFDQMVKRDV 978
            F  C   +     Y+    + +  D FT PFVIKS  G+     GK+IHA V K G  S     N+L+ LY K     +A KVFEEM +RDIV+WN++ISGY  LG                         G++       +L +F++M   G +PD  S +  L AC+ + S ++G+ IH +  +  +    V +  ++++MY K G    A ++F+ M++R++
Sbjct:  105 FTSCGLYIEAVQFYSRMVFAGVKADTFTYPFVIKSVAGISSLEEGKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAEKVFEEMPERDIVSWNSMISGYLALGD------------------------GFS-------SLMLFKEMLKCGFKPDRFSTMSALGACSHVYSPKMGKEIHCHAVRSRIETGDVMVMTSILDMYSKYGEVSYAERIFNGMIQRNI 298          

HSP 2 Score: 98.9821 bits (245), Expect = 6.505e-20
Identity = 54/180 (30.00%), Postives = 85/180 (47.22%), Query Frame = 1
Query:  439 GKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKMPYTTIVSWTAMILGYAHIGSYAEALDVFRQMQIVGIEPDEISIVPILPACAQLGSLELGEWIHMYCDKKSLLRRTVICNALIEMYIKCGCXHQASQLFDQMVKRDV 978
            G+ IH +  + G   H + E AL+D+YG+C                               GQ+K A ++FD+M    ++SW ++I  Y   G    AL++F+++    + PD  +I  ILPA A+  SL  G  IH Y  K      T+I N+L+ MY  CG    A + F+ ++ +DV
Sbjct:  349 GRTIHGYAMRRGFLPHMVLETALIDMYGEC-------------------------------GQLKSAEVIFDRMAEKNVISWNSIIAAYVQNGKNYSALELFQELWDSSLVPDSTTIASILPAYAESLSLSEGREIHAYIVKSRYWSNTIILNSLVHMYAMCGDLEDARKCFNHILLKDV 497          

HSP 3 Score: 84.3445 bits (207), Expect = 1.658e-15
Identity = 54/202 (26.73%), Postives = 96/202 (47.52%), Query Frame = 1
Query:  376 PDKFTLPFVIKSCVGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKMPYTTIVSWTAMILGYAHIGSYAEALDVFRQM-QIVGIEPDEISIVPILPACAQLGSLELGEWIHMYCDKKSLLRRTVICNALIEMYIKCGCXHQASQLFDQMVKRDV 978
            PD+F+    + +C  +  P +GK+IH H  +  +++                               D++   +++  Y++ G++  A  +F+ M    IV+W  MI  YA  G   +A   F++M +  G++PD I+ + +LPA A L     G  IH Y  ++  L   V+  ALI+MY +CG    A  +FD+M +++V
Sbjct:  229 PDRFSTMSALGACSHVYSPKMGKEIHCHAVRSRIETG------------------------------DVMVMTSILDMYSKYGEVSYAERIFNGMIQRNIVAWNVMIGCYARNGRVTDAFLCFQKMSEQNGLQPDVITSINLLPASAILE----GRTIHGYAMRRGFLPHMVLETALIDMYGECGQLKSAEVIFDRMAEKNV 396          

HSP 4 Score: 83.5741 bits (205), Expect = 2.828e-15
Identity = 45/148 (30.41%), Postives = 77/148 (52.03%), Query Frame = 1
Query:  535 LIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKMPYTTIVSWTAMILGYAHIGSYAEALDVFRQMQIVGIEPDEISIVPILPACAQLGSLELGEWIHMYCDKKSLLRRTVICNALIEMYIKCGCXHQASQLFDQMVKRDV 978
            L + +KV +++ D    A    + G+A    M+ A  LFD+M       W  MI G+   G Y EA+  + +M   G++ D  +   ++ + A + SLE G+ IH    K   +    +CN+LI +Y+K GC   A ++F++M +RD+
Sbjct:   52 LRDRYKVTKQVNDP---ALTRALRGFADSRLMEDALQLFDEMNKADAFLWNVMIKGFTSCGLYIEAVQFYSRMVFAGVKADTFTYPFVIKSVAGISSLEEGKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAEKVFEEMPERDI 196          
BLAST of DY262594 vs. ExPASy Swiss-Prot
Match: PP329_ARATH (Pentatricopeptide repeat-containing protein At4g20770 OS=Arabidopsis thaliana GN=PCMP-E35 PE=2 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 5.322e-22
Identity = 58/167 (34.73%), Postives = 89/167 (53.29%), Query Frame = 1
Query:  427 CPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKMPYTTIVSWTAMILGYAHIGSYAEALDVFRQMQIVGIEPDEISIVPILPACAQLGSLELGEWIHMYCDKKSLLRRTVICNALIEMYIKCG 927
            C   GK IH  + + G+KS +   N LLDLY +C +   A KVF+EM+ RD+ +WN  ++   ++G + +A  +FD MP   +VSW  MI      G   +AL V+++M   G  P   ++  +L AC+++     G   H    K  L +   + NAL+ MY KCG
Sbjct:   21 CKLSGKVIHGFIVRMGMKSDTYLCNRLLDLYIECGDGDYARKVFDEMSVRDVYSWNAFLTFRCKVGDLGEACEVFDGMPERDVVSWNNMISVLVRKGFEEKALVVYKRMVCDGFLPSRFTLASVLSACSKVLDGVFGMRCHGVAVKTGLDKNIFVGNALLSMYAKCG 187          

HSP 2 Score: 98.9821 bits (245), Expect = 6.505e-20
Identity = 58/212 (27.36%), Postives = 100/212 (47.17%), Query Frame = 1
Query:  436 LGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYA-----------------------------------RLGQMKKARMLFDKMPYTTIVSWTAMILGYAHIGSYAEALDVFRQMQIVGIEPDEISIVPILPACAQLGSLELGEWIHMYCDKKSLLRRTVICNALIEMYIKCGCXHQASQLFDQMV 966
            LGKQIH    + G        N+LL++Y K  ++  A  +F EM + ++V+WN +I G+                                    R G ++  R +F  +P  ++ +W AM+ GY++   Y EA+  FRQMQ   ++PD+ ++  IL +CA+L  LE G+ IH    +  + + + I + LI +Y +C     +  +FD  +
Sbjct:  267 LGKQIHCLALRLGFGGDLHLNNSLLEIYAKNKDMNGAELIFAEMPEVNVVSWNIMIVGFGQEYRSDKSVEFLTRMRDSGFQPNEVTCISVLGACFRSGDVETGRRIFSSIPQPSVSAWNAMLSGYSNYEHYEEAISNFRQMQFQNLKPDKTTLSVILSSCARLRFLEGGKQIHGVVIRTEISKNSHIVSGLIAVYSECEKMEISECIFDDCI 478          

HSP 3 Score: 76.2554 bits (186), Expect = 4.516e-13
Identity = 49/164 (29.88%), Postives = 81/164 (49.39%), Query Frame = 1
Query:  364 SLILPDKFTLPFVIKSCVGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKM----PYTTIVSWTAMILGYAHIGSYAEALDVFRQMQ-IVGIEPDEISIVPILPACAQLGSLELGE 840
            +++ P++ +   V+ SC  L     G+Q H  V K G  S S  E AL D+Y KC E+  A + F+ +  ++ V WN +I GY   G+  +A  L+ KM         +++ +++   +H G     L++   MQ I GIEP+    + I+    + G LE  E
Sbjct:  513 AVLCPNETSFATVLSSCSRLCSLLHGRQFHGLVVKSGYVSDSFVETALTDMYCKCGEIDSARQFFDAVLRKNTVIWNEMIHGYGHNGRGDEAVGLYRKMISSGEKPDGITFVSVLTACSHSGLVETGLEILSSMQRIHGIEPELDHYICIVDCLGRAGRLEDAE 676          
BLAST of DY262594 vs. ExPASy Swiss-Prot
Match: PP377_ARATH (Putative pentatricopeptide repeat-containing protein At5g13230, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H89 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 6.950e-22
Identity = 60/205 (29.27%), Postives = 99/205 (48.29%), Query Frame = 1
Query:  364 SLILPDKFTLPFVIKSCVGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKMPYTTIVSWTAMILGYAHIGSYAEALDVFRQMQIVGIEPDEISIVPILPACAQLGSLELGEWIHMYCDKKSLLRRTVICNALIEMYIKCGCXHQASQLFDQMVKRDV 978
            + ++P++FTL  ++  C    C  LG+Q+H  V K G        NAL+D+Y KC+++  A K+F E++ ++ V+WN +I GY  LG+  K                               A  +FR+     +   E++    L ACA L S++LG  +H    K +  ++  + N+LI+MY KCG    A  +F++M   DV
Sbjct:  342 AFVVPNEFTLSSILNGCAIGKCSGLGEQLHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTAVKLFAELSSKNEVSWNTVIVGYENLGEGGK-------------------------------AFSMFREALRNQVSVTEVTFSSALGACASLASMDLGVQVHGLAIKTNNAKKVAVSNSLIDMYAKCGDIKFAQSVFNEMETIDV 515          
BLAST of DY262594 vs. ExPASy Swiss-Prot
Match: PP265_ARATH (Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 9.077e-22
Identity = 68/206 (33.01%), Postives = 99/206 (48.06%), Query Frame = 1
Query:  379 DKFTLPFVIKSCVGLLCP----SLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKMPYTTIVSWTAMILGYAHIGSYAEALDVFRQM--QIVGIEPDEISIVPILPACAQLGSLELGEWIHMYCDKKSLLRRTVICNALIEMYIKCGCXHQASQLFDQMVKRDV 978
            D+FT  +V+K+CV   C       GK+IHAH+ + G  SH      L+D+Y                               AR G +  A  +F  MP   +VSW+AMI  YA  G   EAL  FR+M  +     P+ +++V +L ACA L +LE G+ IH Y  ++ L     + +AL+ MY +CG      ++FD+M  RDV
Sbjct:  177 DRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMY-------------------------------ARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDV 351          

HSP 2 Score: 79.7221 bits (195), Expect = 4.084e-14
Identity = 47/138 (34.06%), Postives = 77/138 (55.80%), Query Frame = 1
Query:  376 PDKFTLPFVIKSCVGLLCPSLGKQIHAHVCKFGLKSHSITENALLDLYGKCDELIEAHKVFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKM----PYTTIVSWTAMILGYAHIGSYAEALDVFRQM-QIVGIEP 774
            P+  T+  V+++C  L     GK IH ++ + GL S     +AL+ +YG+C +L    +VF+ M DRD+V+WN+LIS Y   G  KKA  +F++M       T V++ +++   +H G   E   +F  M +  GI+P
Sbjct:  283 PNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKP 420          

HSP 3 Score: 70.0922 bits (170), Expect = 3.236e-11
Identity = 43/154 (27.92%), Postives = 71/154 (46.10%), Query Frame = 1
Query:  532 ELIEAHK-VFEEMTDRDIVAWNNLISGYARLGQMKKARMLFDKMPYTTIVSWTAMILGYAHIGSYAEALDVFRQMQIVGIEPDEISIVPILPAC----AQLGSLELGEWIHMYCDKKSLLRRTVICNALIEMYIKCGCXHQASQLFDQMVKRDV 978
            + +  H+ + +  +D+D      LI  Y+ LG +  AR +FDK    TI  W A+       G   E L ++ +M  +G+E D  +   +L AC      +  L  G+ IH +  ++       I   L++MY + GC   AS +F  M  R+V
Sbjct:   95 DALRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNV 248          
The following BLAST results are available for this feature:
BLAST of DY262594 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 193
Match NameE-valueIdentityDescription
PP144_ARATH6.286e-2331.50Pentatricopeptide repeat-containing protein At2g02... [more]
PP185_ARATH2.389e-2236.94Pentatricopeptide repeat-containing protein At2g35... [more]
PP227_ARATH3.120e-2232.16Putative pentatricopeptide repeat-containing prote... [more]
PP223_ARATH3.120e-2225.45Putative pentatricopeptide repeat-containing prote... [more]
PPR88_ARATH3.817e-2235.76Pentatricopeptide repeat-containing protein At1g62... [more]
PP431_ARATH4.075e-2230.05Pentatricopeptide repeat-containing protein At5g55... [more]
PP350_ARATH5.322e-2231.11Pentatricopeptide repeat-containing protein At4g35... [more]
PP329_ARATH5.322e-2234.73Pentatricopeptide repeat-containing protein At4g20... [more]
PP377_ARATH6.950e-2229.27Putative pentatricopeptide repeat-containing prote... [more]
PP265_ARATH9.077e-2233.01Pentatricopeptide repeat-containing protein At3g46... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100BF07RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262594 ID=DY262594; Name=DY262594; organism=Citrus clementina; type=EST; length=1283bp
ACTAAACCTAAAAATGAATTAAAAAACAACAAAAAAATCGTGACCCTGCA
GCCCTCACTTTTCTATTCACTGCAGCCCTCACTCTCAATCCAGTTCACTG
CAGCTCCCTCTTTCCCCTCAATTTTCTCAATCCAGTTGCAGCAAATCTCT
CTCTTGGTCGCTCTTGGTGTGCTAGCCACTGCCGCTGCTCTTTCTCCGCC
GTAACCGCTGCTGCTCCGACTCTGTCCAGCTGCTGCTACTCGGACTCCGT
CCAGCTGCTGCTACTTCGTTTTTGCTCTCTTGGATCTGCACTTGCTCTCT
CGGATCTTCATCTACTGCTACTTCATTGTCACTTGCCGGTAATTATATAA
CCCACGAGCTGGAAGCCTAATTTTGCCTGATAAATTTACATTACCGTTTG
TGATTAAATCATGTGTGGGGCTGTTGTGTCCTTCCCTGGGAAAGCAAATT
CATGCCCATGTGTGTAAATTTGGGCTGAAGTCGCATTCCATAACAGAGAA
TGCACTTCTAGATTTGTATGGAAAATGTGATGAGCTAATTGAGGCACACA
AAGTGTTCGAGGAAATGACTGATAGAGATATAGTTGCTTGGAATAATCTT
ATTTCTGGGTATGCTAGATTGGGTCAAATGAAGAAAGCAAGAATGCTATT
TGATAAGATGCCTTATACGACTATTGTCTCATGGACTGCAATGATTTTGG
GGTATGCACATATAGGGAGCTATGCTGAAGCACTGGATGTATTTCGGCAA
ATGCAAATAGTGGGTATTGAACCTGATGAGATAAGTATCGTACCTATTTT
GCCAGCTTGTGCACAACTAGGATCTCTTGAGCTAGGGGAATGGATTCATA
TGTATTGTGATAAAAAATCACTGTTGCGGAGGACTGTTATTTGCAATGCT
CTCATCGAAATGTACATAAAATGTGGGTGCATNCATCAAGCAAGTCAGCT
GTTTGATCAGATGGTAAAGAGAGATGTGTTTCATGGAGTACCATGATTGG
AGGCTTGCAAATCATGCAAAGCTCAAAAACATTCATCTATTTCAGAATGC
AAAAAGAAATTGCACTTTTAAGGGCCAGAATACATCTAAAGGAAAAATTG
GAACAGTAATTTTTTAAAATAATTGGTTAAAACAGGGGGTGAAAAAAAAA
CCAAAATTAAAAAGGAAAAAAAAGGAAAAAGGTAAAATTTCTTTTTTAAA
AAAGTTAAATTTTAAAAATTTTTAAAATAAGGAAATTTTTTTTATAAAAA
AAAATTTTGGTTTAAAAAAAATTTTTTGTGTGT
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