DY262645

Overview
NameDY262645
Unique NameDY262645
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1161
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262645 vs. ExPASy Swiss-Prot
Match: DHNA_BACSU (NADH dehydrogenase OS=Bacillus subtilis GN=ahpF PE=1 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 2.238e-24
Identity = 80/262 (30.53%), Postives = 131/262 (50.00%), Query Frame = 1
Query:   22 GGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVL-ADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVIEAYGEXXXXXXXXXXXXXXXTGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIIT-KPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTG 801
            GGQ+  T  +ENF    +   G  L          +   +     +K   K   F++  ++ +VL + TVI++TGA  + +  PG   F N+G++ C  CDG  P+F  K +AVIGGG+S +E A  L    + V ++      +A +++Q R  + P + V+ N+   E  G+               TG+   +++ G+F  IG  P T++++G ++ +  G II  K G   TSVPG+FAAGD  D  Y Q + + G+G
Sbjct:  242 GGQVLDTMSIENFISV-KATEGPKLAASLEEHVKEYDIDVMNLQRAKRLEKKDLFELELENGAVLKSKTVILSTGARWRNVNVPGEQEFKNKGVAYCPHCDG--PLFEGKDVAVIGGGNSGIEAAIDLAGIVNHVTVLEFAPELKADEVLQKRLYSLPNVTVVKNAQTKEITGD---QSVNGITYVDRETGEEKHVELQGVFVQIGLVPNTEWLEGTVERNRMGEIIVDKHGA--TSVPGLFAAGDCTDSAYNQIIISMGSG 495          
BLAST of DY262645 vs. ExPASy Swiss-Prot
Match: AHPF_PSEPU (Alkyl hydroperoxide reductase subunit F OS=Pseudomonas putida GN=ahpF PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.894e-23
Identity = 69/198 (34.85%), Postives = 105/198 (53.03%), Query Frame = 1
Query:  208 SVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVIEAYGEXXXXXXXXXXXXXXXTGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTG 801
            S+ A TVI+ATGA  +++  PG   +  RG++ C  CDG  P+F+ K +AVIGGG+S +E A  L    ++V +I      RA  ++Q +  + P ++VI +++  E  G                T +  ++ + G+F  IG  P T ++ G ++L   G II       TS+PGVFAAGDV    Y+Q V A G G
Sbjct:  310 SLKAKTVILATGARWREMNVPGEQEYRGRGVAYCPHCDG--PLFKGKRVAVIGGGNSGVEAAIDLAGIVAQVTLIEFDSQLRADAVLQRKLRSLPNVNVITSALTTEVLGN--GEKVTGLRYKDRSTDEQHEVALEGIFVQIGLLPNTDWLKGTVELSPRGEIIV-DAKGQTSIPGVFAAGDVTTVPYKQIVIAVGEG 502          
BLAST of DY262645 vs. ExPASy Swiss-Prot
Match: AHPF_PSEPK (Alkyl hydroperoxide reductase subunit F OS=Pseudomonas putida (strain KT2440) GN=ahpF PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.894e-23
Identity = 69/198 (34.85%), Postives = 105/198 (53.03%), Query Frame = 1
Query:  208 SVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVIEAYGEXXXXXXXXXXXXXXXTGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTG 801
            S+ A TVI+ATGA  +++  PG   +  RG++ C  CDG  P+F+ K +AVIGGG+S +E A  L    ++V +I      RA  ++Q +  + P ++VI +++  E  G                T +  ++ + G+F  IG  P T ++ G ++L   G II       TS+PGVFAAGDV    Y+Q V A G G
Sbjct:  310 SLKAKTVILATGARWREMNVPGEQEYRGRGVAYCPHCDG--PLFKGKRVAVIGGGNSGVEAAIDLAGIVAQVTLIEFDSQLRADAVLQRKLRSLPNVNVITSALTTEVLGN--GEKVTGLRYKDRSTDEQHEVALEGIFVQIGLLPNTDWLKGTVELSPRGEIIV-DAKGQTSIPGVFAAGDVTTVPYKQIVIAVGEG 502          
BLAST of DY262645 vs. ExPASy Swiss-Prot
Match: AHPF_SALTY (Alkyl hydroperoxide reductase subunit F OS=Salmonella typhimurium GN=ahpF PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 3.231e-23
Identity = 78/265 (29.43%), Postives = 133/265 (50.19%), Query Frame = 1
Query:   22 GGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIF-TETVSKV---DFKSRPFKVFTDSKSVL-ADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVIEAYGEXXXXXXXXXXXXXXXTGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTG 801
            GGQ+  T D+EN+   P+   G  L    +     +   +  +++ SK+     +    ++ T S +VL A ++I+ATGA  + +  PG D +  +G++ C  CDG  P+F+ K +AVIGGG+S +E A  L      V ++      +A +++Q++  +   +D+I N+   E  G+               +G +  + ++G+F  IG  P T +++G L+ +  G II       TSV GVFAAGD     Y+Q + A G G
Sbjct:  246 GGQVLDTVDIENYISVPK-TEGQKLAGALKAHVSDYDVDVIDSQSASKLVPAATEGGLHQIETASGAVLKARSIIIATGAKWRNMNVPGEDQYRTKGVTYCPHCDG--PLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKADQVLQDKVRSLKNVDIILNAQTTEVKGD--GSKVVGLEYRDRVSGDIHSVALAGIFVQIGLLPNTHWLEGALERNRMGEIII-DAKCETSVKGVFAAGDCTTVPYKQIIIATGEG 504          
BLAST of DY262645 vs. ExPASy Swiss-Prot
Match: AHPF_ECOLI (Alkyl hydroperoxide reductase subunit F OS=Escherichia coli (strain K12) GN=ahpF PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 3.231e-23
Identity = 77/265 (29.06%), Postives = 135/265 (50.94%), Query Frame = 1
Query:   22 GGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIF-TETVSKV---DFKSRPFKVFTDSKSVL-ADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVIEAYGEXXXXXXXXXXXXXXXTGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTG 801
            GGQ+  T D+EN+   P+   G  L    +     +   +  +++ SK+     +    ++ T S +VL A ++IVATGA  + +  PG D +  +G++ C  CDG  P+F+ K +AVIGGG+S +E A  L      V ++      +A +++Q++  +   +D+I N+   E  G+               +G + +++++G+F  IG  P T +++G ++ +  G II       T+V GVFAAGD     Y+Q + A G G
Sbjct:  246 GGQILDTVDIENYISVPK-TEGQKLAGALKVHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKWRNMNVPGEDQYRTKGVTYCPHCDG--PLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKADQVLQDKLRSLKNVDIILNAQTTEVKGD--GSKVVGLEYRDRVSGDIHNIELAGIFVQIGLLPNTNWLEGAVERNRMGEIII-DAKCETNVKGVFAAGDCTTVPYKQIIIATGEG 504          
BLAST of DY262645 vs. ExPASy Swiss-Prot
Match: AHPF_XANCH (Alkyl hydroperoxide reductase subunit F OS=Xanthomonas campestris pv. phaseoli GN=ahpF PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 4.220e-23
Identity = 80/265 (30.19%), Postives = 125/265 (47.17%), Query Frame = 1
Query:   22 GGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLR-FGTQIFT----ETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVIEAYGEXXXXXXXXXXXXXXXTGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTG 801
            GGQ+  T  +ENF   P+    G  M     Q +R +   I      E +              +  S+ + TVI++TGA  +++  PG D + N+G++ C  CDG  P+F+ K +AVIGGG+S +E A  L    + V ++   D  RA +++Q +  +   + +I ++   E  G+                G +  +++ G+F  IG  P T+F+ G + L   G II       T VPGVFAAGD     Y+Q V A G G
Sbjct:  246 GGQVLDTMSIENFISVPE--TEGPKMAAALEQHVRQYDVDIMNLQRAEQLIPAGADGLIEIKLANGASLKSKTVILSTGARWRQMNVPGEDQYKNKGVAYCPHCDG--PLFKGKRVAVIGGGNSGVEAAIDLAGIVAHVTLVEFDDKLRADEVLQRKLRSLHNVRIITSAQTTEVLGDGQKVTGLVYKDRTG--GDIQHIELEGVFVQIGLLPNTEFLRGTVALSPRGEIIV-DDRGQTDVPGVFAAGDATTVPYKQIVIAMGEG 503          
BLAST of DY262645 vs. ExPASy Swiss-Prot
Match: DHNA_BACYN (NADH dehydrogenase OS=Bacillus sp. (strain YN-1) GN=ahpF PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.604e-22
Identity = 78/264 (29.55%), Postives = 133/264 (50.38%), Query Frame = 1
Query:   22 GGQLTTTSDVENFPG--FPQGI-LGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVL-ADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVIEAYGEXXXXXXXXXXXXXXXTGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTG 801
            GGQ+  T  +ENF    + +G  L   L +  +   +        + + K D      ++  ++ +VL + +VI++TGA  + +  PG   F N+G++ C  CDG  P+F  K +AVIGGG+S +E A  L    + V ++      +A +++Q R  + P + VI N+   E  G+               T +V  ++++G+F  IG  P T ++DG L+ +  G I+       T+VPGVFAAGD  +  Y+Q + + G+G
Sbjct:  242 GGQIMDTLSIENFISQKYTEGPKLAASLEEHVKEYDIDVMKLQRAKRLEKKDL----IEIELENGAVLKSKSVILSTGARWRNVGVPGEQEFKNKGVAYCPHCDG--PLFEGKDVAVIGGGNSGVEAAIDLAGIVNHVTVLEFMPELKADEVLQERLNSLPNVTVIKNAQTKEITGD---DKVNGISYMDRDTEEVHHIELAGVFVQIGLVPNTDWLDGTLERNRFGEIVVDSHGA-TNVPGVFAAGDCTNSAYKQIIISMGSG 495          
BLAST of DY262645 vs. ExPASy Swiss-Prot
Match: AHPF_PSEAE (Alkyl hydroperoxide reductase subunit F OS=Pseudomonas aeruginosa GN=ahpF PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 6.094e-22
Identity = 65/203 (32.02%), Postives = 106/203 (52.22%), Query Frame = 1
Query:  193 FTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVIEAYGEXXXXXXXXXXXXXXXTGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTG 801
            F    S+ A T+I+ATGA  +++  PG   +  +G+  C  CDG  P+F+ K +AVIGGG+S +E A  L    + V ++      RA  ++Q +  + P ++VI +++  E  G+               + +   +++ G+F  IG  P T+++ G ++L   G II       TS+PG+FAAGDV    Y+Q V A G G
Sbjct:  306 FESGGSLKAKTLILATGARWREMGVPGEQEYKAKGVCFCPHCDG--PLFKGKRVAVIGGGNSGVEAAIDLAGIVAHVTLLEFDSKLRADAVLQRKLYSLPNVEVITSALTSEVKGD--GQKVTGLVYKDRNSEEFKSIELEGIFVQIGLLPNTEWLKGSVELSPRGEIIV-DARGETSLPGIFAAGDVTTVPYKQIVIAVGEG 503          
BLAST of DY262645 vs. ExPASy Swiss-Prot
Match: FENR_PICTO (Ferredoxin--NADP reductase OS=Picrophilus torridus GN=PTO0431 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 4.677e-14
Identity = 78/256 (30.47%), Postives = 118/256 (46.09%), Query Frame = 1
Query:   22 GGQ---LTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQI-FTETVSKVDFKSRPFKVFTDSK-SVLADTVIVATGA---VAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVIEAYGEXXXXXXXXXXXXXXXTGQVSDLKVSGLFFAIGHEPAT---KFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDV 756
            GGQ   L     V +  G P+ I    L D+   Q+  F  +I     V+ +  ++  FK+  +      A  V++ TG      +K+   G D F+N+G++   V D     FRD  +AV+GGGDSA++ A  L      VYIIH  ++F+A++   + A  N KI  I NS VI   G                T  +S+L +  L  AIGH       K +  QL  +  G ++       T++PG++AAGDV
Sbjct:   39 GGQIPELYPEKPVYDVQGIPK-INAIKLRDQMYEQAKTFNNRIELNSKVTDIIKENDIFKIEVNGVYKYNARAVLLCTGIGDFTPRKIGCEGEDRFFNKGLTY-TVKDTEK--FRDLTVAVVGGGDSALDYATELANTARHVYIIHHSENFKAAEKTIDLARKNEKITFIVNSSVISIDG---GSKLESIKIKNELTNDISELGLDALVVAIGHVGRANIYKSLPLQLSPNKRGVLVN--SKLETNIPGIYAAGDV 285          
BLAST of DY262645 vs. ExPASy Swiss-Prot
Match: FENR1_BACLD (Ferredoxin--NADP reductase 1 OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=BLi02810 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.566e-12
Identity = 65/236 (27.54%), Postives = 111/236 (47.03%), Query Frame = 1
Query:   79 ILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRP----FKVFTDSKSV-LADTVIVATGAVA---KKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVIEAYGEXXXXXXXXXXXXXXXTGQVSDLKVSGLFFAIGHEPATKFVD-GQLDL-HSDGYIITKPGTTHTSVPGVFAAGDV 756
            I G  L+++   Q L F  ++      KV+  +R     F++ T +  V L+ TVIVA G      +KLQ  G++ F    +S       +   F+DK + V GGG+SA++ AN L     KVY+ +R+D+    +   ++ L N  +   +++ + +                   TG+V +L V  +    G+E  T  ++  +LD+   D Y I       +SVPG++AAGD+
Sbjct:   62 ISGAKLIEQLVQQGLTFHPEVLLN--EKVESIARNEEGLFELHTAASGVHLSKTVIVAVGGGILNPQKLQIEGAERF---EVSNLNYTVKSLQHFKDKTVIVSGGGNSAVDWANELEPVAKKVYLAYRKDALSGHEAQVDQ-LLNSSVSCFFHTEITKLIASEDHEVIERVELTNAQTGEVMELPVDEVVINHGYERDTSLLENSRLDVTRVDDYYIAGTSNCQSSVPGLYAAGDI 291          
The following BLAST results are available for this feature:
BLAST of DY262645 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
DHNA_BACSU2.238e-2430.53NADH dehydrogenase OS=Bacillus subtilis GN=ahpF PE... [more]
AHPF_PSEPU1.894e-2334.85Alkyl hydroperoxide reductase subunit F OS=Pseudom... [more]
AHPF_PSEPK1.894e-2334.85Alkyl hydroperoxide reductase subunit F OS=Pseudom... [more]
AHPF_SALTY3.231e-2329.43Alkyl hydroperoxide reductase subunit F OS=Salmone... [more]
AHPF_ECOLI3.231e-2329.06Alkyl hydroperoxide reductase subunit F OS=Escheri... [more]
AHPF_XANCH4.220e-2330.19Alkyl hydroperoxide reductase subunit F OS=Xanthom... [more]
DHNA_BACYN1.604e-2229.55NADH dehydrogenase OS=Bacillus sp. (strain YN-1) G... [more]
AHPF_PSEAE6.094e-2232.02Alkyl hydroperoxide reductase subunit F OS=Pseudom... [more]
FENR_PICTO4.677e-1430.47Ferredoxin--NADP reductase OS=Picrophilus torridus... [more]
FENR1_BACLD2.566e-1227.54Ferredoxin--NADP reductase 1 OS=Bacillus lichenifo... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100CB12RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262645 ID=DY262645; Name=DY262645; organism=Citrus clementina; type=EST; length=1161bp
ATGGCCAATGATATTGCGCCTGGTGGCCAACTCACCACCACCTCCGACGT
CGAGAATTTCCCCGGTTTTCCCCAGGGCATTCTCGGGGGCGACTTGATGG
ATCGCTGCCGCAACCAGTCTCTCCGTTTCGGCACCCAGATTTTTACCGAG
ACCGTTTCCAAAGTCGACTTCAAATCCCGCCCTTTTAAAGTTTTTACAGA
TTCCAAATCCGTTCTTGCTGATACTGTTATTGTCGCCACCGGCGCCGTTG
CCAAAAAGTTGCAATTCCCCGGTTCAGATGCGTTCTGGAACCGTGGCATA
TCGGCCTGCGCAGTGTGTGATGGAGCCGCTCCGATATTTCGGGACAAACC
CTTGGCCGTGATTGGTGGCGGGGATTCAGCCATGGAAGAAGCCAACTTTT
TGACAAAGTACGGATCAAAAGTTTATATAATTCATAGGAGGGATAGTTTT
AGAGCTTCGAAGATTATGCAAAACAGGGCACTTACGAACCCTAAGATTGA
TGTGATTTGGAATTCGGTTGTTATAGAGGCTTATGGAGAAGGGGATAAGA
AGGTTCTGGGAGGATTGAAGGTGAAGAATTTGGTGACTGGACAGGTTTCT
GATTTGAAGGTGTCTGGCTTGTTCTTTGCCATTGGACACGAGCCTGCTAC
TAAGTTTGTGGATGGTCAGTTGGACCTGCATTCTGATGGTTATATTATTA
CCAAACCTGGGACTACACACACTAGTGTCCCTGGAGTTTTTGCTGCTGGA
GATGTTCAGGATAAGAAGTACAGGCAGGCTGTTACCGCCGCCGGCACTGG
TTAGTTCTCTCTTACACTCACGCCCTCATGAATTTTGATATCTATTTCTA
AACACTTCATTATTTATTGAGCTAAACTATGTGCACTAGAGTCTTTTGGG
CTTTGGAACTTGCAAAAATCTCCCAGTTTGACTATCACCTAATTGTATAA
TTTTTGAGAAACTACTCCTTTTGGGCTATAAGCTGAGAAATCCTCCTAGG
TTTGACTACCCCTTAATTGTTAAACGGGATTGCCTTACCCAAAACTAACC
CAAGGAATTGTGATTTTGGGCCCCCCCTTTGGGGAACCCTTTAATTTGTT
TAACTTTAACAATTTTCCTTGGCCGGGGTGAAACTTAAACCCAAAACAAA
ACCCCCCTCCG
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