DY262645

Overview
NameDY262645
Unique NameDY262645
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1161
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262645 vs. ExPASy Swiss-Prot
Match: FENR1_GRAFK (Ferredoxin--NADP reductase 1 OS=Gramella forsetii (strain KT0803) GN=GFO_0125 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.837e-11
Identity = 70/277 (25.27%), Postives = 122/277 (44.04%), Query Frame = 1
Query:   19 PGGQLTTT---SDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIF----TETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVA----KKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRAS--KIMQNRALTN-PKIDVIWNSVVIEAYGEXXXXXXXXXXXXXXXTGQVSD----LKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAG 795
            PGGQ +       + + PGFP+ +L GDL+D    Q   F          ET+ K +  S  F V T   +     V+V  G +     +K   P    + N+G+ A  + D    ++RDK + + GGGDSA++ + FL    S+V ++HRR  FR +   + +   L+   KI++I ++ V++  GE                 ++ D    + + GL   +G        +  L++  +   +       T++PG++A GDV   K +  +   G
Sbjct:   38 PGGQCSEIYPKKPIYDIPGFPE-VLAGDLVDNLMEQIKPFEPGFTLGERAETIDKQEDGS--FIVTTSQGAKHHAPVVVIAGGLGSFEPRKPPIPSIKEYENKGV-AYIIRD--PEVYRDKKVVIAGGGDSALDWSIFLADVASEVSLVHRRKDFRGALDSVEKVEELSKIGKINLITDAEVVDLKGENELDSVLIRHRDQARGEELKDTDHFIPLFGLSPKLG-----PIANWGLEIEKNAIKVDNAYDYQTNIPGIYAIGDVNTYKGKLKLILCG 303          
BLAST of DY262645 vs. ExPASy Swiss-Prot
Match: FENR_LEUMM (Ferredoxin--NADP reductase OS=Leuconostoc mesenteroides subsp. mesenteroides (strain ATCC 8293 / NCDO 523) GN=LEUM_0297 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 4.839e-11
Identity = 76/270 (28.15%), Postives = 112/270 (41.48%), Query Frame = 1
Query:   22 GGQLTTT---SDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTET-VSKVDFKSRPFKV-FTDSKSVLADTVIVATGAVA---KKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVIEAYGEXXXXXXXXXXXXXXXTGQV-SDLKVSGLFFAIGHEPATKFVDG-QLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTG 801
            GGQ+T+      + +  GF  GI G  L+D    Q   F   I T T V+ V   +  F V   +  S  A T+I+ TG  +   +K+Q  G D    +GI            F +  +A+ GGGDSA++ A  L ++     IIHRRD FRA   M+       +  VI  +    +  E                 QV +D+ V  L    G     K V G  +   ++G   +      T++PGVFA GD    + +  + A G G
Sbjct:   40 GGQVTSLYPEKKILDVAGFT-GIKGSALIDSLDEQMKLFPIDIKTSTTVTNVTKTNDLFTVTINNGSSFQAKTIIITTGKGSFEPRKMQVSGVDQLVGQGIHYFVTNKHD---FDNHDVAIAGGGDSAIDMATMLNEFTHSTRIIHRRDQFRA---MEQSVKQLSQSSVIKETPKKVSQIEKQSDGKLKITLAQVKNDQVTNDICVDDLIINYGFISENKIVHGWDIQPENEGQAFSVDQAMQTTIPGVFAIGDASHYEGKADLIAVGFG 302          
BLAST of DY262645 vs. ExPASy Swiss-Prot
Match: FENR1_BACCN (Ferredoxin--NADP reductase 1 OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=Bcer98_0331 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 4.839e-11
Identity = 59/236 (25.00%), Postives = 112/236 (47.46%), Query Frame = 1
Query:   79 ILGGDLMDRCRNQSLRFGTQIF----TETVSKVDFKSRPFKVFTDS-KSVLADTVIVATGA---VAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVIEAYGEXXXXXXXXXXXXXXXTGQVSDLKVSGLFFAIGHE-PATKFVDGQLDLHS-DGYIITKPGTTHTSVPGVFAAGDV 756
            I G  L+++   Q L F  ++      E++++ ++ +  F + T S +   + TVI+ATG+     +KL   G++ F    +S       +   F+DK + V GGG+SA++ AN L     KVY+ +R+++    +  Q   L N  +  + N+ + +                   TG++S L +  +    G+E   T   + +L++   D Y I     + +S+PG++AAGD+
Sbjct:   62 ITGAKLIEQLVEQGLTFQPEVVLNEKVESITRDEYGT--FLLTTSSGQQHFSKTVIIATGSGILKPQKLAIEGAERF---EVSNLNYTVKSLKHFKDKTVIVSGGGNSAIDWANELEPLAKKVYVTYRKEALSGHE-AQITQLLNSSVTCLLNTSITKLIAGENHEAIERVELTNHETGEISYLSIDEVIINHGYERDMTLLENSELNIEMIDNYFIAGNANSESSIPGLYAAGDI 291          
BLAST of DY262645 vs. ExPASy Swiss-Prot
Match: FENR1_LYSSC (Ferredoxin--NADP reductase 1 OS=Lysinibacillus sphaericus (strain C3-41) GN=Bsph_0789 PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 8.255e-11
Identity = 59/237 (24.89%), Postives = 116/237 (48.95%), Query Frame = 1
Query:   79 ILGGDLMDRCRNQSLRFGTQIFTE----TVSKVDFKSRPFKVFTDSKSV-LADTVIVATGAVA---KKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVIEAYGEXXXXXXXXXXXXXXXTGQVSDLKVSGLFFAIGHEPATKFVDGQ---LDLHSDGYIITKPGTTHTSVPGVFAAGDV 756
            I GG L+ +   Q+L F   I+T+    +++K D     F +  +S ++  + TVIVA G      +K++  G++ F    +S       +   F++K + + GGG++A++ A  L +  SKVY+ +R+D   A +  Q   LTN  I+  +NS + +   +               TG ++++ +  +  + G+    + +D     ++  +D Y I     + +S+PG++AAGD+
Sbjct:   62 ISGGQLIKQLVEQALTFNPSIYTDEKVLSIAKND--EGIFVITAESGNIHYSKTVIVAIGGGILNPQKIEIEGAERF---EVSNLNYTIKSYEKFKNKAVIISGGGNTAVDWALELMEVASKVYLTYRKDQLSAHE-AQITELTNSAIECHYNSEITKLIADDQEGMIKAIALTNHETGTITEIPIDEVVISHGYVRDKELLDNSPLAIERKND-YFIAGTINSESSIPGLYAAGDI 291          
The following BLAST results are available for this feature:
BLAST of DY262645 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
FENR1_GRAFK2.837e-1125.27Ferredoxin--NADP reductase 1 OS=Gramella forsetii ... [more]
FENR_LEUMM4.839e-1128.15Ferredoxin--NADP reductase OS=Leuconostoc mesenter... [more]
FENR1_BACCN4.839e-1125.00Ferredoxin--NADP reductase 1 OS=Bacillus cereus su... [more]
FENR1_LYSSC8.255e-1124.89Ferredoxin--NADP reductase 1 OS=Lysinibacillus sph... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA100CB12RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262645 ID=DY262645; Name=DY262645; organism=Citrus clementina; type=EST; length=1161bp
ATGGCCAATGATATTGCGCCTGGTGGCCAACTCACCACCACCTCCGACGT
CGAGAATTTCCCCGGTTTTCCCCAGGGCATTCTCGGGGGCGACTTGATGG
ATCGCTGCCGCAACCAGTCTCTCCGTTTCGGCACCCAGATTTTTACCGAG
ACCGTTTCCAAAGTCGACTTCAAATCCCGCCCTTTTAAAGTTTTTACAGA
TTCCAAATCCGTTCTTGCTGATACTGTTATTGTCGCCACCGGCGCCGTTG
CCAAAAAGTTGCAATTCCCCGGTTCAGATGCGTTCTGGAACCGTGGCATA
TCGGCCTGCGCAGTGTGTGATGGAGCCGCTCCGATATTTCGGGACAAACC
CTTGGCCGTGATTGGTGGCGGGGATTCAGCCATGGAAGAAGCCAACTTTT
TGACAAAGTACGGATCAAAAGTTTATATAATTCATAGGAGGGATAGTTTT
AGAGCTTCGAAGATTATGCAAAACAGGGCACTTACGAACCCTAAGATTGA
TGTGATTTGGAATTCGGTTGTTATAGAGGCTTATGGAGAAGGGGATAAGA
AGGTTCTGGGAGGATTGAAGGTGAAGAATTTGGTGACTGGACAGGTTTCT
GATTTGAAGGTGTCTGGCTTGTTCTTTGCCATTGGACACGAGCCTGCTAC
TAAGTTTGTGGATGGTCAGTTGGACCTGCATTCTGATGGTTATATTATTA
CCAAACCTGGGACTACACACACTAGTGTCCCTGGAGTTTTTGCTGCTGGA
GATGTTCAGGATAAGAAGTACAGGCAGGCTGTTACCGCCGCCGGCACTGG
TTAGTTCTCTCTTACACTCACGCCCTCATGAATTTTGATATCTATTTCTA
AACACTTCATTATTTATTGAGCTAAACTATGTGCACTAGAGTCTTTTGGG
CTTTGGAACTTGCAAAAATCTCCCAGTTTGACTATCACCTAATTGTATAA
TTTTTGAGAAACTACTCCTTTTGGGCTATAAGCTGAGAAATCCTCCTAGG
TTTGACTACCCCTTAATTGTTAAACGGGATTGCCTTACCCAAAACTAACC
CAAGGAATTGTGATTTTGGGCCCCCCCTTTGGGGAACCCTTTAATTTGTT
TAACTTTAACAATTTTCCTTGGCCGGGGTGAAACTTAAACCCAAAACAAA
ACCCCCCTCCG
back to top