DY262647

Overview
NameDY262647
Unique NameDY262647
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1323
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262647 vs. ExPASy Swiss-Prot
Match: FA50A_XENTR (Protein FAM50A OS=Xenopus tropicalis GN=fam50a PE=2 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 9.769e-27
Identity = 57/127 (44.88%), Postives = 81/127 (63.78%), Query Frame = 2
Query:  500 KLGKDPTVETSFLPDXXXXXXXXXXXXXXXXXXXXXXXXIRNEPLQITYSYWDGAGHRRVIQVRKGDTIGEFLRAVQQQLAPEFREIRTTSVGNLLYVKEDLIIPHQHSFYELIVNKARGKKWTAFS 880
            KLGK+P V+TSFLPD                        I++E ++IT+SYWDG+GHRR ++++KG++I +FL+   + L  +F E+R+  V  L+Y+KEDLIIPH HSFY+ IV KARGK    F+
Sbjct:  166 KLGKNPDVDTSFLPDRDREEEENRLREELRQEWERKQEKIKSEEIEITFSYWDGSGHRRTVKMKKGNSIQQFLQKALEILRKDFSELRSAGVEQLMYIKEDLIIPHHHSFYDFIVTKARGKSGPLFN 292          

HSP 2 Score: 75.0998 bits (183), Expect = 1.049e-12
Identity = 35/58 (60.34%), Postives = 45/58 (77.59%), Query Frame = 3
Query:  828 FMSLLLTKPGGKSGPLFHFDVHEDVRTIADATIEKDESHAGESGGEALV*KDQHIFPA 1001
            F   ++TK  GKSGPLF+FDVHEDVR ++DAT+EKDESHAG+    +   K++HIFPA
Sbjct:  275 FYDFIVTKARGKSGPLFNFDVHEDVRLLSDATVEKDESHAGKVVLRSWYEKNKHIFPA 332          
BLAST of DY262647 vs. ExPASy Swiss-Prot
Match: FA50B_MACFA (Protein FAM50B OS=Macaca fascicularis GN=FAM50B PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.176e-26
Identity = 86/286 (30.07%), Postives = 130/286 (45.45%), Query Frame = 2
Query:   74 YVGTAQDAVRIRRLEKQREAERRKIQELKTKSVSD---KGQPGLLQFGSSTSEILETAFKKETVGLVT--------------REEYVEKRVNIRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNSRLSFADDFXXXXXXXXXXXXXLKTKRLAQAKLGKDPTVETSFLPDXXXXXXXXXXXXXXXXXXXXXXXXIRNEPLQITYSYWDGAGHRRVIQVRKGDTIGEFLRAVQQQLAPEFREIRTTSVGNLLYVKEDLIIPHQHSFYELIVNKARGKKWTAFS 880
            Y GT ++A R   L K+RE +R +++ LK +   +   K Q    +  S+  + +E   K  TVGLVT              RE  + KR  +                                   S LSFA D               + +R     LGK+P V+TSFLPD                        +++E +++T+SYWDG+GHRR ++VRKG+T+ +FL+   Q    +F E+R+  V  L+++KEDLI+PH H+FY+ I+ KARGK    F+
Sbjct:    4 YKGTMREAGRAMHLLKKREKQREQMEVLKQRIAEETILKSQVD--KKFSAHYDAVEAELKSSTVGLVTLNDMKARQEALIRERERQLAKRQQLEEQRLQQERLREQEHRRERKRKI------------SCLSFALD------DLDDQADAAEARRAGN--LGKNPDVDTSFLPDRDREEEENRLREELRQEWEAQREKVKDEEMEVTFSYWDGSGHRRTVRVRKGNTVQQFLKKALQGQRKDFLELRSAGVEQLMFIKEDLILPHYHTFYDFIIAKARGKSRPLFN 267          

HSP 2 Score: 68.5514 bits (166), Expect = 9.814e-11
Identity = 32/58 (55.17%), Postives = 43/58 (74.14%), Query Frame = 3
Query:  828 FMSLLLTKPGGKSGPLFHFDVHEDVRTIADATIEKDESHAGESGGEALV*KDQHIFPA 1001
            F   ++ K  GKS PLF+FDVH+DVR ++DAT+EKDESHAG+    +   K++HIFPA
Sbjct:  250 FYDFIIAKARGKSRPLFNFDVHDDVRLLSDATMEKDESHAGKVVLRSWYEKNKHIFPA 307          
BLAST of DY262647 vs. ExPASy Swiss-Prot
Match: FAM50_DROPS (Protein FAM50 homolog OS=Drosophila pseudoobscura pseudoobscura GN=GA11514 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 5.927e-24
Identity = 54/130 (41.54%), Postives = 79/130 (60.77%), Query Frame = 2
Query:  488 LAQAKLGKDPTVETSFLPDXXXXXXXXXXXXXXXXXXXXXXXXIRNEPLQITYSYWDGAGHRRVIQVRKGDTIGEFLRAVQQQLAPEFREIRTTSVGNLLYVKEDLIIPHQHSFYELIVNKARGKKWTAF 877
            + + K+ K+P V+TSFLPD                        +++E + IT+SYWDG+GHRR +Q++KG++I +FL+   + L  EF E++T     L+YVKEDLI+PH +SFY+ IV KARGK    F
Sbjct:  163 IKKKKICKNPDVDTSFLPDREREEQENRLRETLRQEWVMQQAELKDEDISITFSYWDGSGHRRNVQMKKGNSIYQFLQKCLELLRKEFIELKTVMADQLMYVKEDLILPHHYSFYDFIVTKARGKSGPLF 292          

HSP 2 Score: 69.707 bits (169), Expect = 4.405e-11
Identity = 32/58 (55.17%), Postives = 44/58 (75.86%), Query Frame = 3
Query:  828 FMSLLLTKPGGKSGPLFHFDVHEDVRTIADATIEKDESHAGESGGEALV*KDQHIFPA 1001
            F   ++TK  GKSGPLF FDVH+DVR I+DA++EK+ESHAG+    +   +++HIFPA
Sbjct:  276 FYDFIVTKARGKSGPLFQFDVHDDVRMISDASVEKEESHAGKVLLRSWYERNKHIFPA 333          
BLAST of DY262647 vs. ExPASy Swiss-Prot
Match: FAM50_AEDAE (Protein FAM50 homolog OS=Aedes aegypti GN=AAEL010045 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 2.941e-23
Identity = 51/127 (40.16%), Postives = 77/127 (60.63%), Query Frame = 2
Query:  500 KLGKDPTVETSFLPDXXXXXXXXXXXXXXXXXXXXXXXXIRNEPLQITYSYWDGAGHRRVIQVRKGDTIGEFLRAVQQQLAPEFREIRTTSVGNLLYVKEDLIIPHQHSFYELIVNKARGKKWTAFS 880
            K+ K+P V+TSFLPD                        ++++ + IT+SYWDG+GHR+ + ++KG++I +FL+   + L  EF E++T     L+YVKEDLI+PH ++FY+ IV KARGK    FS
Sbjct:  158 KIKKNPDVDTSFLPDREREEMDNKLREELRQEWAMKQATLKDQEIPITFSYWDGSGHRKCVTMKKGNSIYQFLQKCLEMLRKEFSELKTVMADQLMYVKEDLILPHHYTFYDFIVTKARGKSGPLFS 284          
BLAST of DY262647 vs. ExPASy Swiss-Prot
Match: FAM50_DROME (Protein FAM50 homolog OS=Drosophila melanogaster GN=CG12259 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 3.841e-23
Identity = 53/130 (40.77%), Postives = 78/130 (60.00%), Query Frame = 2
Query:  488 LAQAKLGKDPTVETSFLPDXXXXXXXXXXXXXXXXXXXXXXXXIRNEPLQITYSYWDGAGHRRVIQVRKGDTIGEFLRAVQQQLAPEFREIRTTSVGNLLYVKEDLIIPHQHSFYELIVNKARGKKWTAF 877
            + + K+ K+P V+TSFLPD                        +++E + IT+SYWDG+GHRR + ++KG++I +FL+   + L  EF E++T     L+YVKEDLI+PH +SFY+ IV KARGK    F
Sbjct:  164 IKKKKICKNPDVDTSFLPDREREEQENRLREQLRQEWVMQQAELKDEDISITFSYWDGSGHRRNVLMKKGNSIYQFLQKCLELLRKEFIELKTVMADQLMYVKEDLILPHHYSFYDFIVTKARGKSGPLF 293          

HSP 2 Score: 69.707 bits (169), Expect = 4.405e-11
Identity = 32/58 (55.17%), Postives = 44/58 (75.86%), Query Frame = 3
Query:  828 FMSLLLTKPGGKSGPLFHFDVHEDVRTIADATIEKDESHAGESGGEALV*KDQHIFPA 1001
            F   ++TK  GKSGPLF FDVH+DVR I+DA++EK+ESHAG+    +   +++HIFPA
Sbjct:  277 FYDFIVTKARGKSGPLFQFDVHDDVRMISDASVEKEESHAGKVLLRSWYERNKHIFPA 334          
BLAST of DY262647 vs. ExPASy Swiss-Prot
Match: FAM50_ANOGA (Protein FAM50 homolog OS=Anopheles gambiae GN=AGAP002062 PE=3 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 1.907e-22
Identity = 49/127 (38.58%), Postives = 77/127 (60.63%), Query Frame = 2
Query:  500 KLGKDPTVETSFLPDXXXXXXXXXXXXXXXXXXXXXXXXIRNEPLQITYSYWDGAGHRRVIQVRKGDTIGEFLRAVQQQLAPEFREIRTTSVGNLLYVKEDLIIPHQHSFYELIVNKARGKKWTAFS 880
            K+ K+P V+TSFLPD                        ++++ + IT+SYWDG+GHR+ + ++KG++I +FL+   + L  +F E++T     L+YVKEDLI+PH ++FY+ IV KARGK    F+
Sbjct:  169 KIRKNPDVDTSFLPDREREERDNRLREELRQEWAMKQATLKDQEITITFSYWDGSGHRKSVAMKKGNSIYQFLQKCLEMLRKDFSELKTVMADQLMYVKEDLILPHHYTFYDFIVTKARGKSGPLFN 295          
BLAST of DY262647 vs. ExPASy Swiss-Prot
Match: FAM50_DICDI (Protein FAM50 homolog OS=Dictyostelium discoideum GN=fam50 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.252e-22
Identity = 53/124 (42.74%), Postives = 74/124 (59.68%), Query Frame = 2
Query:  506 GKDPTVETSFLPDXXXXXXXXXXXXXXXXXXXXXXXXIRNEPLQITYSYWDGAGHRRVIQVRKGDTIGEFLRAVQQQLAPEFREIRTTSVGNLLYVKEDLIIPHQHSFYELIVNKARGKKWTAF 877
            GKDP+V T FLPD                        I++E  +ITYS+WDG+GHRR ++  KG TI  FL   ++    EF+E+R  SV  L+++KED+IIPH +SFY+L+++KARGK    F
Sbjct:  173 GKDPSVNTDFLPDIEREELEKLEREKLAKEWLDQQERIKSEEFEITYSFWDGSGHRRSMKCSKGTTIERFLENARK----EFKELRGVSVDKLMFIKEDIIIPHNYSFYDLMLSKARGKSGPLF 292          

HSP 2 Score: 70.8626 bits (172), Expect = 1.978e-11
Identity = 33/61 (54.10%), Postives = 44/61 (72.13%), Query Frame = 3
Query:  819 NTVFMSLLLTKPGGKSGPLFHFDVHEDVRTIADATIEKDESHAGESGGEALV*KDQHIFPA 1001
            N  F  L+L+K  GKSGPLF FDVHEDVR + DAT+EK+ESHA +    +   +++HIFP+
Sbjct:  273 NYSFYDLMLSKARGKSGPLFRFDVHEDVRLVNDATVEKEESHAAKMVESSWYERNKHIFPS 333          
BLAST of DY262647 vs. ExPASy Swiss-Prot
Match: FAM50_CAEEL (Protein FAM50 homolog OS=Caenorhabditis elegans GN=C47E8.4 PE=1 SV=3)

HSP 1 Score: 102.834 bits (255), Expect = 4.696e-21
Identity = 73/267 (27.34%), Postives = 117/267 (43.82%), Query Frame = 2
Query:   92 DAVRIRRLEKQREAERRKIQELKTKSVSDKGQ--PGLLQFGSSTSEILETAFKKETVGLVTREEYV---EKRVNIRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNSRLSFADDFXXXXXXXXXXXXXLKTKRLAQAKLGKDPTVETSFLPDXXXXXXXXXXXXXXXXXXXXXXXXIRNEPLQITYSYWDGAGHRRVIQVRKGDTIGEFLRAVQQQLAPEFREIRTTSVGNLLYVKEDLIIPHQHSFYELIVNKARGKKWTAF 877
            D  R+  L K+RE E+  I++   K   DK +   G+     +  E +E   K +T GLV+ ++     +  ++ R+                                   LSFA D                   + + ++G DPTV+TSFLPD                         +NE + + Y+YWDG+ HR+ ++++KG+TI + L    + L  EF E+++ +  NL++VKEDLIIPH ++F + IV KA GK    F
Sbjct:    5 DEGRLIHLAKKREREKEDIEQQLRKLEEDKEKCRVGITNKFMANYETVEEVVKSKTYGLVSLDDMKNIQKNEISNRDLQVARGDQSSSTQSKDSQEAREKEEHVAKHTQKRFLSFAFDDEEDEEDAAPI--------IPKKRVGMDPTVDTSFLPDKEREEFLRKKKESLAAEWRVKQDAEKNEEITVAYAYWDGSSHRKNMKIKKGNTISQCLGRAIEALKKEFTELKSCTAENLMFVKEDLIIPHFYTFQDFIVTKAMGKTGPLF 263          
BLAST of DY262647 vs. ExPASy Swiss-Prot
Match: FAM50_CAEBR (Protein FAM50 homolog OS=Caenorhabditis briggsae GN=CBG04561 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.046e-20
Identity = 73/267 (27.34%), Postives = 118/267 (44.19%), Query Frame = 2
Query:   92 DAVRIRRLEKQREAERRKIQELKTKSVSDKGQ--PGLLQFGSSTSEILETAFKKETVGLVTREEYV---EKRVNIRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNSRLSFADDFXXXXXXXXXXXXXLKTKRLAQAKLGKDPTVETSFLPDXXXXXXXXXXXXXXXXXXXXXXXXIRNEPLQITYSYWDGAGHRRVIQVRKGDTIGEFLRAVQQQLAPEFREIRTTSVGNLLYVKEDLIIPHQHSFYELIVNKARGKKWTAF 877
            D  R+  L K+RE E+  I++   K   DK +   G+    ++  E +E + K +T GLV+ ++     +  ++ R+                                   LSFA +                   + + ++G DPTV+TSFLPD                         +NE + + Y+YWDG+ HR+ ++V+KG+TI + L    + L  EF E++  +  NL++VKEDLIIPH ++F + IV KA GK    F
Sbjct:    5 DEGRLIHLAKKREREKEDIEKQLRKLEEDKEKCKVGITSKFTANYETMEESVKSKTYGLVSLDDMKNIQKNEISNRDLQVARGASSSTSLAKDSQEAREKEEHVAKHTQKRVLSFAYEDEEEDEDAAPI--------VPKKRVGMDPTVDTSFLPDKEREEFLRKKKEELAAEWRVKQNTEKNEEITVAYAYWDGSSHRKNMKVKKGNTISQCLARAIEALKKEFTELKACTPENLMFVKEDLIIPHFYTFQDFIVTKAMGKTGPLF 263          
BLAST of DY262647 vs. ExPASy Swiss-Prot
Match: FAM50_SCHPO (FAM50 family protein C1020.12c OS=Schizosaccharomyces pombe GN=SPCC1020.12c PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 9.814e-11
Identity = 39/125 (31.20%), Postives = 59/125 (47.20%), Query Frame = 2
Query:  503 LGKDPTVETSFLPDXXXXXXXXXXXXXXXXXXXXXXXXIRNEPLQITYSYWDGAGHRRVIQVRKGDTIGEFLRAVQQQLAPEFREIRTTSVGNLLYVKEDLIIPHQHSFYELIVNKARGKKWTAF 877
            +GKDP+ +TSFLPD                        IR + + I + Y+DG      ++ R  D++G FL  ++QQ+ P  + I    +   L V+ DLIIPH H  Y   +NK +G+    F
Sbjct:   96 MGKDPSADTSFLPDAEREIRENAKRAEYRKQWLKEQEQIREKEILIPFIYYDGTSTTYHVRTRLKDSVGHFLADMKQQI-PFLKRI--LDMDKFLLVQSDLIIPHHHELYYFYINKVQGRDGLLF 217          
The following BLAST results are available for this feature:
BLAST of DY262647 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
FA50A_XENTR9.769e-2744.88Protein FAM50A OS=Xenopus tropicalis GN=fam50a PE=... [more]
FA50B_MACFA2.176e-2630.07Protein FAM50B OS=Macaca fascicularis GN=FAM50B PE... [more]
FAM50_DROPS5.927e-2441.54Protein FAM50 homolog OS=Drosophila pseudoobscura ... [more]
FAM50_AEDAE2.941e-2340.16Protein FAM50 homolog OS=Aedes aegypti GN=AAEL0100... [more]
FAM50_DROME3.841e-2340.77Protein FAM50 homolog OS=Drosophila melanogaster G... [more]
FAM50_ANOGA1.907e-2238.58Protein FAM50 homolog OS=Anopheles gambiae GN=AGAP... [more]
FAM50_DICDI3.252e-2242.74Protein FAM50 homolog OS=Dictyostelium discoideum ... [more]
FAM50_CAEEL4.696e-2127.34Protein FAM50 homolog OS=Caenorhabditis elegans GN... [more]
FAM50_CAEBR1.046e-2027.34Protein FAM50 homolog OS=Caenorhabditis briggsae G... [more]
FAM50_SCHPO9.814e-1131.20FAM50 family protein C1020.12c OS=Schizosaccharomy... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100CC02RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262647 ID=DY262647; Name=DY262647; organism=Citrus clementina; type=EST; length=1323bp
AGAAATCGAGAAAGGCAGAACTGCTACCGAGAGAAACACACAGCATATCA
AGATGTCGGGTATGGGAGATGGGTACGTGGGCACGGCCCAAGACGCGGTG
AGGATCCGGAGACTCGAGAAGCAAAGAGAAGCCGAGCGTCGCAAAATCCA
AGAGCTCAAAACGAAGTCCGTCTCCGACAAGGGCCAGCCCGGTCTCCTCC
AGTTTGGTTCAAGTACCTCCGAGATTCTAGAAACTGCGTTTAAGAAGGAA
ACCGTAGGTTTAGTCACCAGAGAGGAATACGTTGAGAAGAGGGTTAATAT
TCGGAACAAGATTGAAGAGGAAGAAAAGGAGAAGCTTCAGAAGCTACTAC
AAGAGGAAGAGGAGCTGCAATTGGAAAAGCGTAAAAAGCGAAAGATTAAG
GGAAATTCTCGATTATCATTTGCTGATGATTTTGAGAGTGAAAATGAAGA
GGAGAATGGAGAAATTGAAAATTTGAAAACAAAGAGGCTTGCGCAAGCGA
AATTGGGAAAAGATCCAACGGTGGAGACTAGCTTTTTGCCTGACAGTGAG
AGAGAGGCAGAGGAGCAATCTGAGCGTGAACGGTTGCAGCGACAGTGGCT
TCGTGAGCAGGAGCAAATTCGAAATGAGCCCCTTCAAATCACTTATAGTT
ATTGGGATGGAGCAGGCCATAGACGAGTTATCCAGGTTCGGAAGGGTGAT
ACAATAGGAGAGTTTCTTCGGGCTGTTCAACAACAACTTGCACCTGAGTT
TCGAGAAATCCGAACGACGTCAGTGGGAAATTTGCTTTATGTTAAAGAAG
ATCTTATCATCCCTCATCAACACAGTTTTTATGAGCTTATTGTTAACAAA
GCCAGGGGGAAAAAGTGGACCGCTTTTTCACTTTGATGTTCACGAGGATG
TACGGACGATTGCTGATGCAACTATAGAAAAAGATGAGTCCCATGCTGGG
GAAAGTGGTGGAGAGGCACTGGTATGAAAAGACCAGCATATCTTCCCTGC
TCTCGATGGGAGATTATGACCCAACCAGAAAATGGAAGCGATCCCCCTTC
CCTGGGGGATTGATCAGTTCGGCTTTGGGCAAATAATTTTTTCTGAAAAC
GTTTGATTTGTTTTCGGGCAATTAACTTAAATCTTGAACCTTGTTGGGGC
CCTTTTTGAAAGGCTTTTTCCCAAATTTTTTTAAATTGGAAAGGGGCCCT
GGTTTTTGTGGGTTTTTTTGAAAATTCCTATTTATCACAAAAAAAAAAAA
TGGGGGGCATTGGGGAAAAAGAAAGAGGGAATAATATTATAAAAAACAAC
AATCATCTACCCCCCCCTTTGGG
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