DY262649

Overview
NameDY262649
Unique NameDY262649
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1287
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262649 vs. ExPASy Swiss-Prot
Match: MCAT_MOUSE (Mitochondrial carnitine/acylcarnitine carrier protein OS=Mus musculus GN=Slc25a20 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.254e-11
Identity = 63/239 (26.36%), Postives = 95/239 (39.75%), Query Frame = 1
Query:  139 KELVAGGVAGGFGKTAVAPLERVKILFQTRRAEFHS-----IGLFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRGPVLDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKRHVPEDHK--KDIMVK--LACGSIAXLLGQTFTYPLDVVRRQMQ 828
            K L+AGG  G        PL+ VK+  QT+            G     +K    EG  G YRG  A +  + P  A+ +  +   ++    S  D    P L   AG  +G        P + ++  L  Q             S E+ Y G  DC ++ Y+E G+RG Y+G   +L    P +G+ F  YE +K     + K   D+ V   L  G  A +       P DV++ + Q
Sbjct:   12 KNLLAGGFGGMCLVFVGHPLDTVKVRLQTQPPSLSGQPPMYSGTLDCFRKTLMREGITGLYRGMAAPIIGVTPMFAVCFFGFGLGKKLQQKSPEDELSYPQL-FTAGMLSGVFTTGIMTPGERIKCLLQIQ-----------ASSGENKYSGTLDCAKKLYQEFGIRGFYKGTVLTLMRDVPASGMYFMTYEWLKNLFTPEGKSVSDLSVPRILVAGGFAGIFNWAVAIPPDVLKSRFQ 238          
BLAST of DY262649 vs. ExPASy Swiss-Prot
Match: SAMC_HUMAN (S-adenosylmethionine mitochondrial carrier protein OS=Homo sapiens GN=SLC25A26 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 5.556e-11
Identity = 62/245 (25.31%), Postives = 100/245 (40.82%), Query Frame = 1
Query:  127 PVFAKELVAGGVAGGFGKTAVAPLERVKILFQTRRAEFHSIGLFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRGPVLDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKR--HVPEDHKKDIMVKLACGSIAXLLGQTFTYPLDVVRRQMQVERFSVSNS 855
            P F   LVAGGVAG      + PL+ +K   Q             S +   K  G  G Y G  ++     P AA  ++ Y EY +W + +       P+  ++A S     A L   P ++V+ +     V +S + FQ               F     E G++GLYRG   ++    P++ ++F  +E +K      +DH  D      CG+ A       T PLDV + ++ + +   S +
Sbjct:    4 PGFVAALVAGGVAGVSVDLILFPLDTIKTRLQ-------------SPQGFNKAGGFHGIYAGVPSAAIGSFPNAAAFFITY-EYVKWFLHADSSSYLTPMKHMLAASAGEVVACLIRVPSEVVKQRAQ---VSASTRTFQ--------------IFSNILYEEGIQGLYRGYKSTVLREIPFSLVQFPLWESLKALWSWRQDHVVDSWQSAVCGAFAGGFAAAVTTPLDVAKTRITLAKAGSSTA 217          
BLAST of DY262649 vs. ExPASy Swiss-Prot
Match: KMCP1_MACFA (Kidney mitochondrial carrier protein 1 OS=Macaca fascicularis GN=SLC25A30 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 5.556e-11
Identity = 49/186 (26.34%), Postives = 87/186 (46.77%), Query Frame = 1
Query:  436 IAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKR-HVPEDHKKDIMVKLACGSIAXLLGQTFTYPLDVVRRQMQVERFSVSNSAESRGTMQTLVMIAQNKDGSNYFQGSASTI*RCT-VCGIGVTVYD 987
            + G  A  TA   T+P+DL +T+L  Q   +  K        E  YRG+     +  +E GL+ LY G AP++     Y  +K   Y+ +KR  V     + +++ + CG ++ ++  T   P DV++ +MQ +  ++       G +   + I Q +     ++G + T  R   V G+ + VYD
Sbjct:   10 VYGGLASITAECGTFPIDLTKTRLQIQGQTNDAK------FKEIRYRGMLHALVRIGREEGLKALYSGIAPAMLRQSSYGTIKIGTYQSLKRLFVERPEDETLLINVICGILSGVISSTIANPTDVLKIRMQAQSSTIQG-----GMIGNFMNIYQQEGTRGLWKGVSLTAQRAAIVVGVELPVYD 184          
BLAST of DY262649 vs. ExPASy Swiss-Prot
Match: YM39_YEAST (Uncharacterized mitochondrial carrier YMR166C OS=Saccharomyces cerevisiae GN=YMR166C PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.477e-11
Identity = 60/240 (25.00%), Postives = 108/240 (45.00%), Query Frame = 1
Query:  145 LVAGGVAGGFGKTAVAPLERVKILFQTRRAEFHSIGLFGSIKKIAKTEGAM-GFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRGPVLDLIAGSFAGGTAVLFTY-PLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKRHVPEDHKKD-------IMVKLACGSIAXLLGQTFTYPLDVVRRQMQVER 837
            +V+GG+ G  G +A+  L+ VK   Q          +  + + I   EG   G Y G  A++    P AA+ +  YE  +R +I    D      +  ++  F G     F Y P ++++T+L  Q      +       + + Y  +R+  +   KE G R L+ G   +L    P++ L+F FYE+ ++   +  +KD       I  ++  G+ A  L    T P+DVV+ ++Q ++
Sbjct:   57 VVSGGIGGKIGDSAMHSLDTVKTRQQGAPNVKKYRNMISAYRTIWLEEGVRRGLYGGYMAAMLGSFPSAAIFFGTYEYTKRTMI---EDWQINDTITHLSAGFLGDFISSFVYVPSEVLKTRLQLQ-----GRFNNPFFQSGYNYSNLRNAIKTVIKEEGFRSLFFGYKATLARDLPFSALQFAFYEKFRQLAFKIEQKDGRDGELSIPNEILTGACAGGLAGIITTPMDVVKTRVQTQQ 288          
BLAST of DY262649 vs. ExPASy Swiss-Prot
Match: SAMC_BOVIN (S-adenosylmethionine mitochondrial carrier protein OS=Bos taurus GN=SLC25A26 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.477e-11
Identity = 66/270 (24.44%), Postives = 111/270 (41.11%), Query Frame = 1
Query:  127 PVFAKELVAGGVAGGFGKTAVAPLERVKILFQTRRAEFHSIGLFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRGPVLDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKR--HVPEDHKKDIMVKLACGSIAXLLGQTFTYPLDVVRRQMQVERFSVSNSAESRGTMQTLVMIAQNKDGSNYFQG 930
            P F   LVAGGVAG      + PL+ +K   Q+ +  +             K  G  G Y G  ++     P AA  ++ Y EY +WI+ +       PV  ++A S     A L   P ++V+ +     V +S   F       H++  I         + G++GLYRG   ++    P++ ++F  +E +K      +D   D      CG+ A       T PLDV + ++ + +    +S  S   +  L  + + +  S  F G
Sbjct:    4 PGFTASLVAGGVAGVSVDLILFPLDTIKTRLQSPQGFY-------------KAGGFYGVYAGVPSTAIGSFPNAAAFFVTY-EYVKWILHTDSSSYLMPVTHMLAASVGEVVACLIRVPSEVVKQRAQ---VSASSGTF-------HIFSNI-------LCQEGIQGLYRGYKSTVLREIPFSLVQFPLWESLKALWSWRQDRVVDSWQAAVCGAFAGGFAAAVTTPLDVAKTRIMLAK--AGSSTASGNILSALHAVWRTQGLSGLFAG 240          
The following BLAST results are available for this feature:
BLAST of DY262649 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 215
Match NameE-valueIdentityDescription
MCAT_MOUSE4.254e-1126.36Mitochondrial carnitine/acylcarnitine carrier prot... [more]
SAMC_HUMAN5.556e-1125.31S-adenosylmethionine mitochondrial carrier protein... [more]
KMCP1_MACFA5.556e-1126.34Kidney mitochondrial carrier protein 1 OS=Macaca f... [more]
YM39_YEAST9.477e-1125.00Uncharacterized mitochondrial carrier YMR166C OS=S... [more]
SAMC_BOVIN9.477e-1124.44S-adenosylmethionine mitochondrial carrier protein... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100CC04RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262649 ID=DY262649; Name=DY262649; organism=Citrus clementina; type=EST; length=1287bp
ATTTATTCTTTCTTCAACTATAAGAAAGAACAGGAAATTCTCTCTTTCTT
CTCTCTCTGATAATTGCAAAAGAAGAGAGAAGAAAGAGAGATGGGTATGT
TAATGGATGGAATAATAGAGGGCATGCCTGTGTTTGCAAAGGAGCTGGTT
GCCGGTGGCGTTGCTGGTGGCTTCGGCAAGACTGCTGTTGCCCCACTTGA
GCGCGTCAAGATTTTGTTTCAGACTAGAAGAGCAGAATTTCACAGCATCG
GATTGTTTGGATCCATTAAGAAGATCGCAAAAACAGAAGGTGCTATGGGT
TTCTACAGAGGAAATGGTGCTAGTGTAGCTCGAATTGTTCCATATGCAGC
ACTTCATTACATGGCTTATGAGGAATATCGTAGATGGATTATCCTCAGTT
TTCCTGATGTTAGCAGAGGCCCTGTACTTGATCTCATAGCAGGATCTTTT
GCTGGAGGAACTGCTGTGCTGTTTACTTATCCTCTTGATTTAGTTCGAAC
AAAATTGGCTTATCAGATTGTTGATTCATCAAAAAAGAACTTTCAAGGAG
TAGTTAGTGCAGAACATGTTTATAGAGGAATTCGCGATTGTTTTCGTCAG
ACTTACAAAGAGTCTGGGCTTAGAGGTCTATATCGTGGTGCAGCTCCATC
GCTCTATGGAATCTTCCCATATGCTGGTTTGAAATTTTACTTCTACGAGG
AGATGAAGCGCCATGTCCCTGAGGATCACAAGAAAGATATAATGGTGAAA
CTTGCATGTGGATCCATCGCANGTCTATTGGGTCAGACCTTCACGTACCC
TCTTGATGTTGTTAGAAGACAAATGCAGGTTGAAAGATTCTCAGTGTCTA
ATAGTGCGGAGTCAAGAGGAACAATGCAGACCCTTGTTATGATTGCTCAA
AACAAAGATGGAAGCAATTATTTTCAGGGCTCAGCATCAACTATTTGAAG
GTGTACCGTCTGTGGCATTGGGGTTACGGTGTACGACTTTAGGAATCATA
CCTGAAAGTCCAGCACGAAATGAAGAAGTTTGAAACGTGGGAACGACCAA
GAAAATATCCACCCTCCCTCCCTCCTTATAAGATTTAACTCCTTTTCAAT
TGGATTAAAATTCTAATCAGGGCTTACAAACCTTTGAATTGTTCAAATTG
GGATTTTAATTGTGGGGTACCATTTCCACCCCCTAACTGGGGAACTTAAA
ATTTCATTTTTTTCAGCGGTTTAACCCCTCTTTGAAAAATATATCTTCCC
GCCCTTTCCAAAAAAATTGGGTTACTTTTTGGCGTCG
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