DY262655

Overview
NameDY262655
Unique NameDY262655
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1289
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_PSYWF (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Psychrobacter sp. (strain PRwf-1) GN=gatA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 3.718e-15
Identity = 49/148 (33.11%), Postives = 69/148 (46.62%), Query Frame = 1
Query:  292 GLSFAVSDLFDIEGYVTGFGHPEWXXXXXXXXXXXXXXXXLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 735
            GL  A  DLF  +G +T  G                    + E GA C+GK  +DEFA   +  + +Y    NP   S++P               V F+ G DT G +R P++FCG+ G +P+YG VS  G+I  ++SLD  G F R
Sbjct:   73 GLPMAHKDLFCTKGLLTTSGSK--ILHNFVSPYDATIVSNIREAGAVCLGKLNMDEFAMGSDNESSYYGAVHNPWDLSRVPGGSSGGSAAAVAAGFVPFATGSDTGGSIRQPASFCGLTGIKPTYGRVSRFGMIAYASSLDQAGTFGR 218          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_SALRD (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Salinibacter ruber (strain DSM 13855) GN=gatA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 4.856e-15
Identity = 51/148 (34.46%), Postives = 65/148 (43.92%), Query Frame = 1
Query:  292 GLSFAVSDLFDIEGYVTGFGHPEWXXXXXXXXXXXXXXXXLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 735
            GL  AV D   I GY    G                    L + GA  IGKT  DEFA   +    H+    NP AP  +P              L   +LG DT G VR P+AFCG +G +P+YG VS  G++  ++SLD +G   R
Sbjct:   70 GLVLAVKDNICIRGYPVSCGSK--MLADFSSLYDATVIDRLRDAGAIFIGKTNCDEFAMGSSNETSHFGPVRNPHAPEYVPGGSSGGSAAAVAAGLCHAALGSDTGGSVRQPAAFCGTVGLKPTYGRVSRSGLVAFASSLDVIGPLTR 215          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_ANADE (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=gatA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 6.342e-15
Identity = 58/174 (33.33%), Postives = 76/174 (43.68%), Query Frame = 1
Query:  292 GLSFAVSDLFDIEGYVTGFGHPEWXXXXXXXXXXXXXXXXLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQI 813
            G+  AV DLF  +G  T  G                    L   GA  +GK  +DEFA   +  N  Y    NP   S+ P               V  SLG DT G +R P+AFCG++G +P+YG VS  G++  ++SLD VG  AR+      VG   L L   A   PR +
Sbjct:   78 GVPVAVKDLFVTKGVPTTAGSR--ILEGYLPPYDATVVERLEAAGAVIVGKLNMDEFAMGSSNENSAYKPCHNPWDLSRTPGGSSGGSAASVAAGQVHASLGTDTGGSIREPAAFCGVVGVKPTYGRVSRYGVVAFASSLDQVGPLARE------VGDAALVLRTIAGHDPRDM 243          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_ANAD2 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=gatA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 6.342e-15
Identity = 58/174 (33.33%), Postives = 76/174 (43.68%), Query Frame = 1
Query:  292 GLSFAVSDLFDIEGYVTGFGHPEWXXXXXXXXXXXXXXXXLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQI 813
            G+  AV DLF  +G  T  G                    L   GA  +GK  +DEFA   +  N  Y    NP   S+ P               V  SLG DT G +R P+AFCG++G +P+YG VS  G++  ++SLD VG  AR+      VG   L L   A   PR +
Sbjct:   78 GVPVAVKDLFVTKGVPTTAGSR--ILEGWLPPYDATVVERLEAAGAVIVGKLNMDEFAMGSSNENSAYKPCHNPWDLSRTPGGSSGGSAASVAAGQVHASLGTDTGGSIREPAAFCGVVGVKPTYGRVSRYGVVAFASSLDQVGPLARE------VGDAALVLRTIAGHDPRDM 243          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_DEHSC (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Dehalococcoides sp. (strain CBDB1) GN=gatA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 8.283e-15
Identity = 41/109 (37.61%), Postives = 59/109 (54.13%), Query Frame = 1
Query:  412 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARD 738
            L + GA  +GKT +DEFA   +  N  Y T  NP    ++P                 FSLG DT G +R P++FC + G++PSYG VS  G++  ++SLD +G F +D
Sbjct:  111 LAKEGAVLLGKTNMDEFAMGSSTENSAYFTTRNPWNTDKVPGGSSGGSAACVAASEAVFSLGSDTGGSIRQPASFCSVTGYKPSYGMVSRYGLVAFASSLDQIGPFTKD 219          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_DEHSB (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Dehalococcoides sp. (strain BAV1) GN=gatA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 8.283e-15
Identity = 41/109 (37.61%), Postives = 59/109 (54.13%), Query Frame = 1
Query:  412 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARD 738
            L + GA  +GKT +DEFA   +  N  Y T  NP    ++P                 FSLG DT G +R P++FC + G++PSYG VS  G++  ++SLD +G F +D
Sbjct:  111 LAKEGAVLLGKTNMDEFAMGSSTENSAYFTTRNPWNTDKVPGGSSGGSAACVAASEAVFSLGSDTGGSIRQPASFCSVTGYKPSYGMVSRYGLVAFASSLDQIGPFTKD 219          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_ANASK (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Anaeromyxobacter sp. (strain K) GN=gatA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.082e-14
Identity = 57/174 (32.76%), Postives = 76/174 (43.68%), Query Frame = 1
Query:  292 GLSFAVSDLFDIEGYVTGFGHPEWXXXXXXXXXXXXXXXXLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQI 813
            G+  AV D+F  +G  T  G                    L   GA  +GK  +DEFA   +  N  Y    NP   S+ P               V  SLG DT G +R P+AFCG++G +P+YG VS  G++  ++SLD VG  AR+      VG   L L   A   PR +
Sbjct:   78 GVPVAVKDIFVTKGVPTTAGSR--ILEGYLPPYDATVVERLEAAGAVIVGKLNMDEFAMGSSNENSAYKPCHNPWDLSRTPGGSSGGSAASVAAGQVHASLGTDTGGSIREPAAFCGVVGVKPTYGRVSRYGVVAFASSLDQVGPLARE------VGDAALVLRTIAGHDPRDM 243          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_METM7 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=gatA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.413e-14
Identity = 38/100 (38.00%), Postives = 56/100 (56.00%), Query Frame = 1
Query:  424 GATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVG 723
            GA  +G T +DEFA   +G   ++    NPAA  ++P             DL D ++G DT G +R P++ CGI+GF+PSYG VS  G+  ++ S D +G
Sbjct:   91 GALIVGMTNMDEFASGSSGETSYFGPTKNPAAMDRIPGGSSSGSAAAVAADLCDMAIGSDTGGSIRNPASHCGIVGFKPSYGVVSRQGLCDLAMSFDQIG 190          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_METM6 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=gatA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.413e-14
Identity = 38/100 (38.00%), Postives = 56/100 (56.00%), Query Frame = 1
Query:  424 GATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVG 723
            GA  +G T +DEFA   +G   ++    NPAA  ++P             DL D ++G DT G +R P++ CGI+GF+PSYG VS  G+  ++ S D +G
Sbjct:   91 GALIVGMTNMDEFASGSSGETSYFGPTKNPAAMDRIPGGSSSGSAAAVAADLCDMAIGSDTGGSIRNPASHCGIVGFKPSYGVVSRQGLCDLAMSFDQIG 190          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_LYSSC (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Lysinibacillus sphaericus (strain C3-41) GN=gatA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.413e-14
Identity = 40/109 (36.70%), Postives = 59/109 (54.13%), Query Frame = 1
Query:  412 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARD 738
            L E G   +GK  +DEFA   +  N +Y T  NP   + +P               V FSLG DT G +R P+A+CG++G +P+YG VS  G++  ++SLD +G   R+
Sbjct:  109 LREAGMITVGKLNMDEFAMGSSNENSYYKTTKNPWNLNHVPGGSSGASAASVAAGEVPFSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPITRN 217          
The following BLAST results are available for this feature:
BLAST of DY262655 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 302
Match NameE-valueIdentityDescription
GATA_PSYWF3.718e-1533.11Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_SALRD4.856e-1534.46Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_ANADE6.342e-1533.33Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_ANAD26.342e-1533.33Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_DEHSC8.283e-1537.61Glutamyl-tRNA(Gln) amidotransferase subunit A OS=D... [more]
GATA_DEHSB8.283e-1537.61Glutamyl-tRNA(Gln) amidotransferase subunit A OS=D... [more]
GATA_ANASK1.082e-1432.76Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_METM71.413e-1438.00Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_METM61.413e-1438.00Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_LYSSC1.413e-1436.70Glutamyl-tRNA(Gln) amidotransferase subunit A OS=L... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100CC10RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262655 ID=DY262655; Name=DY262655; organism=Citrus clementina; type=EST; length=1289bp
CAGCTTCAGGTTGCTCCTCTCCTCCTCGAGCTCTTAGGTTTTGATAGCAG
TGCGTGTGGGTGCTGCTTCCTTGTTTGGTTAAAGTTCAAATTAAGAATTA
TATCGAGTTCCTATATGGCTTCTCAATCTGCTAATTTATGGGTATTGTTG
GGTCTGGGTTTAGCTGGAATTCTGCTAATGACTAAAAAGCTTAAGAAGAA
TATAAAACAAGATTTTGGAGCGTTCATCGAGAAACTTCAACTGCTTCCTC
CGCCTCAGCCCCTTCCTCCAAAAGCCCCTCATCCTCTTACCGGCCTCTCT
TTTGCCGTCTCTGACCTATTCGATATCGAAGGATACGTGACTGGTTTTGG
GCATCCAGAGTGGGCCCGGACGCACAGTGCAGCTTCTCGAACGTCTACTG
TGGTTTCCACCCTCGTCGAAGGAGGTGCCACTTGCATTGGCAAAACTGTG
GTTGATGAATTTGCCTACAGTATAAATGGAACAAATAAGCATTATGATAC
GCCTACTAATCCTGCTGCACCTTCACAAATGCCGGGTGGATCTTCTAGTG
GGGCTGCTGTGGCCGTTGCTGCTGATCTTGTTGATTTCTCCTTGGGTATT
GATACTGTTGGAGGTGTGAGGGTACCTTCTGCATTTTGTGGAATTTTAGG
GTTCCGGCCCTCCTATGGGGCTGTTTCCCACATGGGGATTATACCCATTT
CAACAAGTCTTGATACTGTTGGTTGGTTTGCTAGGGATCCTAAAATTCTG
CGTCATGTTGGCCATGTGTTGCTGCAACTTCCATTTGCAGCTCAACGTAG
TCCAAGACAAATTATAATTGCTGATGATTGTTTTGAGCTCTTGAAGATTC
CTGCTGACAGGGTTGTTCAGGTGGTAATTAAGTCAACTGAGAAACTTTTT
GGGAGACAAGTGTTTGAGCATGAAAACCTCGGAGAATATTTTGAATCTAA
AGTTCCAAGCTTGAAAGGGTTTCACAAAACAAATGGTGAACTAAAAAATG
TTATTGCGTTAAATCCACCGATATGAATTCAAAAATAATCAAAATGGATG
GAATTGAATCAAAAAAACCCGCCTCAAATTCTGAAATTCTCTTGCAAAAT
TGAAAAAATGTTGAAAAATTAAGAAAAAGTGGAAAAAAAATGTGCAATTC
CTTTTGAAAAAAAATTGCGTTTTACCATTTAATTTCTTCCTTTTAAAAAA
AGAAAGGGAATTTTTTTGGTAACCCTTCTCACCTGTCTATATCCTCCCTC
TCCAAAACTTTTTGGGGGGGAAAAAGAAAAAAATTTTTT
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