DY262655

Overview
NameDY262655
Unique NameDY262655
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1289
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_CHLSY (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=gatA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.413e-14
Identity = 47/123 (38.21%), Postives = 62/123 (50.41%), Query Frame = 1
Query:  412 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVG---WFARDPKILRHV--GH 765
            LV  GA  +GK   DEFA   +  N  Y   TNP  P+++P               V  +LG DT G +R P+A CGI G +P+YG VS  G+I   +SLD +G   W   D  +L +V  GH
Sbjct:  112 LVAAGAVLVGKLNCDEFAMGSSTENSAYQITTNPWDPTRVPGGSSGGSAAAVAAGQVPATLGTDTGGSIRQPAALCGISGLKPTYGRVSRYGLIAYGSSLDQIGPMAWTVADLAVLLNVIAGH 234          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_CHLAA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=gatA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.413e-14
Identity = 47/123 (38.21%), Postives = 62/123 (50.41%), Query Frame = 1
Query:  412 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVG---WFARDPKILRHV--GH 765
            LV  GA  +GK   DEFA   +  N  Y   TNP  P+++P               V  +LG DT G +R P+A CGI G +P+YG VS  G+I   +SLD +G   W   D  +L +V  GH
Sbjct:  112 LVAAGAVLVGKLNCDEFAMGSSTENSAYQITTNPWDPTRVPGGSSGGSAAAVAAGQVPATLGTDTGGSIRQPAALCGISGLKPTYGRVSRYGLIAYGSSLDQIGPMAWTVADLAVLLNVIAGH 234          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_CARHZ (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=gatA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.413e-14
Identity = 59/185 (31.89%), Postives = 86/185 (46.49%), Query Frame = 1
Query:  412 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR---DPKILRHV--GHVLLQLPFAAQRSPRQIIIADDCFELLKI--PADRVVQVVIKSTEKLFGRQVFEHENLGEYFE 945
            L E GA   GKT +DEFA   +  N  +    NP    ++P                  +LG DT G +R P+AFCGI+G +P+YGAVS  G++  ++SLD +G FAR   D  +L +V  GH       A    P  +   +   + LKI  P +  +  +    +K     +   E+LG  FE
Sbjct:  111 LKEAGAVFTGKTNLDEFAMGSSTENSRFFPTRNPWDLERVPGGSSGGSAASVAAGEAVVALGSDTGGSIRQPAAFCGIVGLKPTYGAVSRYGLVAFASSLDQIGPFARTVEDAALLLNVIAGHDPKDSTSADIEYPDYLSFLNQDIKGLKIGLPKEYFIDGIDAGVKKAIDDAIKVLESLGAVFE 295          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_ACIBL (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Acidobacteria bacterium (strain Ellin345) GN=gatA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.413e-14
Identity = 43/111 (38.74%), Postives = 58/111 (52.25%), Query Frame = 1
Query:  412 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPK 744
            L   GA  +GKT  DEFA   +  N  Y    NP   S++P                  SLG DT G +R P++FCG++G  P+YG VS  G+I  ++SLD +G FA+D K
Sbjct:  111 LEAAGAVILGKTNCDEFAMGSSNENSAYGPVRNPRDKSRVPGGSSGGSAAVVAAGTAVTSLGSDTGGSIRQPASFCGVVGLMPTYGRVSRYGLIAFASSLDHIGPFAKDVK 221          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_METST (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanosphaera stadtmanae (strain DSM 3091) GN=gatA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.845e-14
Identity = 38/109 (34.86%), Postives = 59/109 (54.13%), Query Frame = 1
Query:  412 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARD 738
            +++     IG T +DEFA   +     Y    NP AP  +P             ++ D +LG DT G +R P++ CG++GF+P+YG VS  G++ ++ SLD +G FA D
Sbjct:  106 ILDEDGVIIGLTNMDEFAAGSSTETSMYGPTNNPKAPGHIPGGSSGGSAAAIAANMCDITLGSDTGGSIRNPASHCGVMGFKPTYGMVSRQGLLDLAMSLDQIGPFAND 214          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_METAC (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanosarcina acetivorans GN=gatA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.845e-14
Identity = 50/167 (29.94%), Postives = 77/167 (46.11%), Query Frame = 1
Query:  412 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQV 912
            L++ GA  +GKT +DEFA   +    +Y    NP    ++P                 F+LG DT G VR P+AFCG++G +P+YGAVS  G++  + SL+ VG       +  +V  + + +   A    R     D   E  K   D V  + I   ++ FG  +
Sbjct:  102 LLDAGAVILGKTNLDEFAMGSSTETSYYGPTANPWDLERVPGGSSGGSAAVVAAGEAPFALGSDTGGSVRCPAAFCGVVGLKPTYGAVSRYGVVAYANSLEQVG------PLANNVEDIAILMDVIAGYDRRDSTSIDSKTEYQKALVDDVKGLKIGVPKEFFGEGI 262          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_DEHE1 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Dehalococcoides ethenogenes (strain 195) GN=gatA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.845e-14
Identity = 41/109 (37.61%), Postives = 59/109 (54.13%), Query Frame = 1
Query:  412 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARD 738
            L E GA  +GKT +DEFA   +  N  + T  NP   +++P                 FSLG DT G +R P++FC + G +PSYG VS  G++  ++SLD +G F +D
Sbjct:  111 LAEEGAVLLGKTNMDEFAMGSSTENSAFFTTHNPWNTAKVPGGSSGGSAACVAASEAVFSLGSDTGGSIRQPASFCSVTGLKPSYGMVSRYGLVAFASSLDQIGPFTKD 219          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_THEPX (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Thermoanaerobacter sp. (strain X514) GN=gatA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.410e-14
Identity = 39/109 (35.78%), Postives = 61/109 (55.96%), Query Frame = 1
Query:  412 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARD 738
            L+E G   +GK+ +DEFA   +  N  + T  NP   S++P             D   F+LG DT G +R P++ CG++G +P+YG VS  G++  ++SLD +G F +D
Sbjct:  110 LLEEGVIILGKSNLDEFAMGSSTENSAFKTTKNPWDLSRVPGGSSGGSAAAIAADEAAFALGSDTGGSIRQPASLCGVVGMKPTYGLVSRYGLVAFASSLDQIGPFTKD 218          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_THEP3 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=gatA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.410e-14
Identity = 39/109 (35.78%), Postives = 61/109 (55.96%), Query Frame = 1
Query:  412 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARD 738
            L+E G   +GK+ +DEFA   +  N  + T  NP   S++P             D   F+LG DT G +R P++ CG++G +P+YG VS  G++  ++SLD +G F +D
Sbjct:  110 LLEEGVIILGKSNLDEFAMGSSTENSAFKTTKNPWDLSRVPGGSSGGSAAAIAADEAAFALGSDTGGSIRQPASLCGVVGMKPTYGLVSRYGLVAFASSLDQIGPFTKD 218          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_MYCGE (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Mycoplasma genitalium GN=gatA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.410e-14
Identity = 53/181 (29.28%), Postives = 89/181 (49.17%), Query Frame = 1
Query:  424 GATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLL---QLPFAAQRSPRQIIIADDCFELLKIPADRVVQV-VIKSTEKLFGRQVFEH-ENLGEYFESK 951
            GA  +GK  +DEF     G+   +    +P   S +              D+V FS+  DT   +R P++ C ++GF+P+YG +S  G+ P + S+D VG FA+    +  V  V++   +  F++Q+SP +    +  F  L IP  R ++   +K  EKLF + + +   NL +  E K
Sbjct:  104 GALLVGKANMDEFGLGGTGSYSAFGVVHHPENSSLIAGGSSSGSAYAVAKDIVPFSIATDTGDSIRRPASICNVVGFKPTYGLISRNGVFPYAPSMDHVGIFAKFVSDIAIVSDVVIKHDKTDFSSQKSPDE----NQFFNELAIPFTRSIRFGYLKPLEKLFNKHLQKKWNNLKKTLEQK 280          
The following BLAST results are available for this feature:
BLAST of DY262655 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 302
Match NameE-valueIdentityDescription
GATA_CHLSY1.413e-1438.21Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_CHLAA1.413e-1438.21Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_CARHZ1.413e-1431.89Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_ACIBL1.413e-1438.74Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_METST1.845e-1434.86Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_METAC1.845e-1429.94Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_DEHE11.845e-1437.61Glutamyl-tRNA(Gln) amidotransferase subunit A OS=D... [more]
GATA_THEPX2.410e-1435.78Glutamyl-tRNA(Gln) amidotransferase subunit A OS=T... [more]
GATA_THEP32.410e-1435.78Glutamyl-tRNA(Gln) amidotransferase subunit A OS=T... [more]
GATA_MYCGE2.410e-1429.28Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100CC10RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262655 ID=DY262655; Name=DY262655; organism=Citrus clementina; type=EST; length=1289bp
CAGCTTCAGGTTGCTCCTCTCCTCCTCGAGCTCTTAGGTTTTGATAGCAG
TGCGTGTGGGTGCTGCTTCCTTGTTTGGTTAAAGTTCAAATTAAGAATTA
TATCGAGTTCCTATATGGCTTCTCAATCTGCTAATTTATGGGTATTGTTG
GGTCTGGGTTTAGCTGGAATTCTGCTAATGACTAAAAAGCTTAAGAAGAA
TATAAAACAAGATTTTGGAGCGTTCATCGAGAAACTTCAACTGCTTCCTC
CGCCTCAGCCCCTTCCTCCAAAAGCCCCTCATCCTCTTACCGGCCTCTCT
TTTGCCGTCTCTGACCTATTCGATATCGAAGGATACGTGACTGGTTTTGG
GCATCCAGAGTGGGCCCGGACGCACAGTGCAGCTTCTCGAACGTCTACTG
TGGTTTCCACCCTCGTCGAAGGAGGTGCCACTTGCATTGGCAAAACTGTG
GTTGATGAATTTGCCTACAGTATAAATGGAACAAATAAGCATTATGATAC
GCCTACTAATCCTGCTGCACCTTCACAAATGCCGGGTGGATCTTCTAGTG
GGGCTGCTGTGGCCGTTGCTGCTGATCTTGTTGATTTCTCCTTGGGTATT
GATACTGTTGGAGGTGTGAGGGTACCTTCTGCATTTTGTGGAATTTTAGG
GTTCCGGCCCTCCTATGGGGCTGTTTCCCACATGGGGATTATACCCATTT
CAACAAGTCTTGATACTGTTGGTTGGTTTGCTAGGGATCCTAAAATTCTG
CGTCATGTTGGCCATGTGTTGCTGCAACTTCCATTTGCAGCTCAACGTAG
TCCAAGACAAATTATAATTGCTGATGATTGTTTTGAGCTCTTGAAGATTC
CTGCTGACAGGGTTGTTCAGGTGGTAATTAAGTCAACTGAGAAACTTTTT
GGGAGACAAGTGTTTGAGCATGAAAACCTCGGAGAATATTTTGAATCTAA
AGTTCCAAGCTTGAAAGGGTTTCACAAAACAAATGGTGAACTAAAAAATG
TTATTGCGTTAAATCCACCGATATGAATTCAAAAATAATCAAAATGGATG
GAATTGAATCAAAAAAACCCGCCTCAAATTCTGAAATTCTCTTGCAAAAT
TGAAAAAATGTTGAAAAATTAAGAAAAAGTGGAAAAAAAATGTGCAATTC
CTTTTGAAAAAAAATTGCGTTTTACCATTTAATTTCTTCCTTTTAAAAAA
AGAAAGGGAATTTTTTTGGTAACCCTTCTCACCTGTCTATATCCTCCCTC
TCCAAAACTTTTTGGGGGGGAAAAAGAAAAAAATTTTTT
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