DY262655

Overview
NameDY262655
Unique NameDY262655
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1289
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_LEPBP (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=gatA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.910e-11
Identity = 36/109 (33.03%), Postives = 55/109 (50.46%), Query Frame = 1
Query:  412 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARD 738
            L E G     +  +DEFA   +  N  + T  NP    ++P              ++  SLG DT G +R P++ CGI G +P+YG VS  G++  ++SLD +G F+ D
Sbjct:  112 LKEKGFVLFPRLNMDEFAMGSSTENSAFQTSKNPFDSDRIPGGSSGGSAAAVAGSMLPISLGSDTGGSIRQPASLCGIWGLKPTYGRVSRYGLVAYASSLDQIGPFSND 220          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_LEPBA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=gatA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.910e-11
Identity = 36/109 (33.03%), Postives = 55/109 (50.46%), Query Frame = 1
Query:  412 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARD 738
            L E G     +  +DEFA   +  N  + T  NP    ++P              ++  SLG DT G +R P++ CGI G +P+YG VS  G++  ++SLD +G F+ D
Sbjct:  112 LKEKGFVLFPRLNMDEFAMGSSTENSAFQTSKNPFDSDRIPGGSSGGSAAAVAGSMLPISLGSDTGGSIRQPASLCGIWGLKPTYGRVSRYGLVAYASSLDQIGPFSND 220          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_LACRJ (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Lactobacillus reuteri (strain JCM 1112) GN=gatA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.910e-11
Identity = 37/103 (35.92%), Postives = 56/103 (54.37%), Query Frame = 1
Query:  436 IGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPK 744
            +GKT +DEFA   +  N  + T  NP   +++P               V  +LG DT G +R+P++F G++G +P+YG VS  GII   +S D VGW  ++ K
Sbjct:  117 VGKTNLDEFAMGSSTENSAFFTTHNPWDLTRVPGGSSGGSAAAVAAGDVLGALGTDTGGSIRMPASFNGVVGMKPTYGRVSRWGIIAFGSSFDQVGWLTQNVK 219          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_LACRD (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Lactobacillus reuteri (strain DSM 20016) GN=gatA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.910e-11
Identity = 37/103 (35.92%), Postives = 56/103 (54.37%), Query Frame = 1
Query:  436 IGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPK 744
            +GKT +DEFA   +  N  + T  NP   +++P               V  +LG DT G +R+P++F G++G +P+YG VS  GII   +S D VGW  ++ K
Sbjct:  117 VGKTNLDEFAMGSSTENSAFFTTHNPWDLTRVPGGSSGGSAAAVAAGDVLGALGTDTGGSIRMPASFNGVVGMKPTYGRVSRWGIIAFGSSFDQVGWLTQNVK 219          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_DESAH (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) GN=gatA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.910e-11
Identity = 36/111 (32.43%), Postives = 55/111 (49.55%), Query Frame = 1
Query:  412 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPK 744
            L + GA  +GKT +DEF    +  N  +    NP     +P              +   +LG DT G +R P++ CG++G +PSYG VS  G++  ++SLD +G   R  K
Sbjct:  110 LKQAGAVIVGKTNLDEFGMGSSTENSAFHLTRNPWNLDHVPGGSSGGSAAAVAARMCTAALGTDTGGSIRQPASHCGVVGLKPSYGRVSRFGMVAYASSLDQIGPITRTVK 220          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_CAMJR (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Campylobacter jejuni (strain RM1221) GN=gatA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.910e-11
Identity = 39/104 (37.50%), Postives = 53/104 (50.96%), Query Frame = 1
Query:  412 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVG 723
            L   G +  G+  +DEFA   +  + +Y    NP    ++P              L   SLG DT G VR P+AFCG +GF+PSYG VS  G+   S+SLD +G
Sbjct:   88 LKANGFSPFGRCNMDEFAMGSSTASSYYGKTLNPLNFERVPGGSSGGSAAAVAGGLALASLGSDTGGSVRQPAAFCGCVGFKPSYGRVSRYGLASYSSSLDQIG 191          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_CAMJ8 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=gatA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.910e-11
Identity = 39/104 (37.50%), Postives = 53/104 (50.96%), Query Frame = 1
Query:  412 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVG 723
            L   G +  G+  +DEFA   +  + +Y    NP    ++P              L   SLG DT G VR P+AFCG +GF+PSYG VS  G+   S+SLD +G
Sbjct:   88 LKANGFSPFGRCNMDEFAMGSSTASSYYGKTLNPLNFERVPGGSSGGSAAAVAGGLALASLGSDTGGSVRQPAAFCGCVGFKPSYGRVSRYGLASYSSSLDQIG 191          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_BURXL (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Burkholderia xenovorans (strain LB400) GN=gatA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.910e-11
Identity = 38/108 (35.19%), Postives = 53/108 (49.07%), Query Frame = 1
Query:  412 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 735
            L   G  C+GKT +DEFA   +  N ++    NP     +P              L   + G DT G +R P++F GI G +P+YG VS  G+I  ++SLD  G  AR
Sbjct:  107 LQNAGMVCVGKTNMDEFAMGSSNENSYFGPVQNPWDVKAVPGGSSGGSAAAVAARLAPAATGTDTGGSIRQPASFSGITGIKPTYGRVSRYGMIAFASSLDQGGPMAR 214          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_BURP8 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=gatA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.910e-11
Identity = 37/108 (34.26%), Postives = 54/108 (50.00%), Query Frame = 1
Query:  412 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 735
            L + G  C+GKT +DEFA   +  N ++    NP     +P              L   + G DT G +R P++F GI G +P+YG VS  G+I  ++SLD  G  A+
Sbjct:  107 LAQAGMVCVGKTNMDEFAMGSSNENSYFGPVQNPWDRKAVPGGSSGGSAAAVAARLAPAATGTDTGGSIRQPASFSGITGIKPTYGRVSRYGMIAFASSLDQGGPMAQ 214          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_BORBU (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Borrelia burgdorferi GN=gatA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.910e-11
Identity = 41/115 (35.65%), Postives = 58/115 (50.43%), Query Frame = 1
Query:  424 GATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPK----ILRH 756
            GA  IG+T +DEFA        +Y    NP     +                  FSLG DT G VR+P++F GILGF+PSYG +S  G+   ++S D +G+F+   +    IL+H
Sbjct:  129 GAILIGRTNMDEFAMGSTCEFSYYGATLNPLNREYVIGGSSGGSAAVVAAFQAPFSLGSDTGGSVRLPASFSGILGFKPSYGGLSRYGLASYASSFDQIGFFSHSIEDIALILKH 243          
The following BLAST results are available for this feature:
BLAST of DY262655 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 302
Match NameE-valueIdentityDescription
GATA_LEPBP1.910e-1133.03Glutamyl-tRNA(Gln) amidotransferase subunit A OS=L... [more]
GATA_LEPBA1.910e-1133.03Glutamyl-tRNA(Gln) amidotransferase subunit A OS=L... [more]
GATA_LACRJ1.910e-1135.92Glutamyl-tRNA(Gln) amidotransferase subunit A OS=L... [more]
GATA_LACRD1.910e-1135.92Glutamyl-tRNA(Gln) amidotransferase subunit A OS=L... [more]
GATA_DESAH1.910e-1132.43Glutamyl-tRNA(Gln) amidotransferase subunit A OS=D... [more]
GATA_CAMJR1.910e-1137.50Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_CAMJ81.910e-1137.50Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_BURXL1.910e-1135.19Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_BURP81.910e-1134.26Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_BORBU1.910e-1135.65Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100CC10RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262655 ID=DY262655; Name=DY262655; organism=Citrus clementina; type=EST; length=1289bp
CAGCTTCAGGTTGCTCCTCTCCTCCTCGAGCTCTTAGGTTTTGATAGCAG
TGCGTGTGGGTGCTGCTTCCTTGTTTGGTTAAAGTTCAAATTAAGAATTA
TATCGAGTTCCTATATGGCTTCTCAATCTGCTAATTTATGGGTATTGTTG
GGTCTGGGTTTAGCTGGAATTCTGCTAATGACTAAAAAGCTTAAGAAGAA
TATAAAACAAGATTTTGGAGCGTTCATCGAGAAACTTCAACTGCTTCCTC
CGCCTCAGCCCCTTCCTCCAAAAGCCCCTCATCCTCTTACCGGCCTCTCT
TTTGCCGTCTCTGACCTATTCGATATCGAAGGATACGTGACTGGTTTTGG
GCATCCAGAGTGGGCCCGGACGCACAGTGCAGCTTCTCGAACGTCTACTG
TGGTTTCCACCCTCGTCGAAGGAGGTGCCACTTGCATTGGCAAAACTGTG
GTTGATGAATTTGCCTACAGTATAAATGGAACAAATAAGCATTATGATAC
GCCTACTAATCCTGCTGCACCTTCACAAATGCCGGGTGGATCTTCTAGTG
GGGCTGCTGTGGCCGTTGCTGCTGATCTTGTTGATTTCTCCTTGGGTATT
GATACTGTTGGAGGTGTGAGGGTACCTTCTGCATTTTGTGGAATTTTAGG
GTTCCGGCCCTCCTATGGGGCTGTTTCCCACATGGGGATTATACCCATTT
CAACAAGTCTTGATACTGTTGGTTGGTTTGCTAGGGATCCTAAAATTCTG
CGTCATGTTGGCCATGTGTTGCTGCAACTTCCATTTGCAGCTCAACGTAG
TCCAAGACAAATTATAATTGCTGATGATTGTTTTGAGCTCTTGAAGATTC
CTGCTGACAGGGTTGTTCAGGTGGTAATTAAGTCAACTGAGAAACTTTTT
GGGAGACAAGTGTTTGAGCATGAAAACCTCGGAGAATATTTTGAATCTAA
AGTTCCAAGCTTGAAAGGGTTTCACAAAACAAATGGTGAACTAAAAAATG
TTATTGCGTTAAATCCACCGATATGAATTCAAAAATAATCAAAATGGATG
GAATTGAATCAAAAAAACCCGCCTCAAATTCTGAAATTCTCTTGCAAAAT
TGAAAAAATGTTGAAAAATTAAGAAAAAGTGGAAAAAAAATGTGCAATTC
CTTTTGAAAAAAAATTGCGTTTTACCATTTAATTTCTTCCTTTTAAAAAA
AGAAAGGGAATTTTTTTGGTAACCCTTCTCACCTGTCTATATCCTCCCTC
TCCAAAACTTTTTGGGGGGGAAAAAGAAAAAAATTTTTT
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