DY262655

Overview
NameDY262655
Unique NameDY262655
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1289
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_METMP (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanococcus maripaludis GN=gatA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.410e-14
Identity = 39/100 (39.00%), Postives = 55/100 (55.00%), Query Frame = 1
Query:  424 GATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVG 723
            GA  +G T +DEFA   +G    Y    NPAA  ++P             DL D ++G DT G +R P++ CGI+GF+PSYG VS  G+  ++ S D +G
Sbjct:   91 GALIVGMTNMDEFAGGSSGETSCYGPTKNPAAMDRIPGGSSSGSAAAVAADLCDMAIGSDTGGSIRNPASHCGIVGFKPSYGVVSRQGLCDLAMSFDQIG 190          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_METVS (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=gatA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.147e-14
Identity = 38/100 (38.00%), Postives = 55/100 (55.00%), Query Frame = 1
Query:  424 GATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVG 723
            GA  IG T +DEFA   +G   +Y    NP A  ++P             DL D +LG DT G +R P++ CG++GF+P+YG VS  G+  ++ S D +G
Sbjct:   91 GALIIGMTNMDEFASGSSGETSYYGPTKNPKALDRIPGGSSSGSAAAVSADLCDMALGSDTGGSIRNPASHCGVVGFKPTYGVVSRQGLCDLAMSFDQIG 190          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_METM5 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=gatA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.147e-14
Identity = 39/100 (39.00%), Postives = 55/100 (55.00%), Query Frame = 1
Query:  424 GATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVG 723
            GA  +G T +DEFA   +G    Y    NPAA  ++P             DL D ++G DT G +R P++ CGI+GF+PSYG VS  G+  ++ S D +G
Sbjct:   91 GALIVGMTNMDEFAGGSSGETSCYGPTKNPAALDRIPGGSSSGSAAAVAADLCDMAIGSDTGGSIRNPASHCGIVGFKPSYGVVSRQGLCDLAMSFDQIG 190          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_SYNR3 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Synechococcus sp. (strain RCC307) GN=gatA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.111e-14
Identity = 38/108 (35.19%), Postives = 60/108 (55.56%), Query Frame = 1
Query:  412 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 735
            L + GA  +GKT +DEFA   +     +   +NP  P ++P                D +LG DT G +R P++FCG++G +P+YG VS  G++  ++SLD +G F+R
Sbjct:  106 LWKAGAVMVGKTNLDEFAMGSSTETSAFGMTSNPWDPGRVPGGSSGGSAACVAAGQCDVALGSDTGGSIRQPASFCGVVGLKPTYGRVSRWGLVAFASSLDQIGPFSR 213          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_METMA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanosarcina mazei GN=gatA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.111e-14
Identity = 56/192 (29.17%), Postives = 90/192 (46.88%), Query Frame = 1
Query:  412 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFA---RDPKILRHV--GHVLLQLPFAAQRSPRQIIIADDCFEL-LKIPADRVVQVVIKSTEKLFGRQVFEHENLGEYFES-KVPSLK 966
            L+  GA  +GKT +DEFA   +    H+    NP    ++P                 F+LG DT G VR P++FCG++G +P+YGAVS  G++  + SL+ VG  A    D  +L  V  G+          ++  Q  + DD   L + +P +   + +    EK     + + E+LG  +E   +P +K
Sbjct:  102 LLSAGAVILGKTNMDEFAMGSSTETSHFGPTANPWDLERVPGGSSGGSAAVVAAGEAPFALGSDTGGSVRCPASFCGVVGLKPTYGAVSRYGVVAYANSLEQVGPLANNVEDIAVLMDVIAGYDRRDSTSIDSKTEYQKALVDDVKGLKIGVPKEFFGEGIHPDVEKAVWDAIHKCESLGATWEEVSMPHIK 293          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_EXISA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=gatA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.111e-14
Identity = 40/108 (37.04%), Postives = 59/108 (54.63%), Query Frame = 1
Query:  412 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 735
            L + GA  IGK  +DEFA   +  N  +    NP  P+++P               V FSLG DT G +R P+A+CG++G +P+YG VS  G++  ++SLD +G   R
Sbjct:  108 LHDAGALTIGKLNMDEFAMGSSNENSAFKPVRNPWDPTRVPGGSSGGSAASVAAGQVLFSLGSDTGGSIRQPAAYCGVVGMKPTYGLVSRFGLVAFASSLDQIGPLTR 215          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: HYIN_PSESS (Indoleacetamide hydrolase OS=Pseudomonas syringae pv. savastanoi GN=iaaH PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 5.369e-14
Identity = 40/104 (38.46%), Postives = 53/104 (50.96%), Query Frame = 1
Query:  424 GATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 735
            GA   GK  + E ++ +   N H+ T  NP AP                  +V  S+G DT G +R+P+AFCGI GFRP+ G  S  GIIP+S + D VG   R
Sbjct:  107 GAVVAGKNNMHELSFGVTSINPHWGTVGNPVAPGYCAGGSSGGSAAAVASGIVPLSVGTDTGGSIRIPAAFCGITGFRPTTGRWSTAGIIPVSHTKDCVGLLTR 210          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_THET8 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=gatA PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 5.369e-14
Identity = 41/109 (37.61%), Postives = 58/109 (53.21%), Query Frame = 1
Query:  424 GATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKIL 750
            GA  +GKT +DEF    +  +  +    NP  P ++P             DL   +LG DT G VR P+AFCG+ G +P+YG VS  G+I  ++SLD +G  AR  + L
Sbjct:  102 GALVLGKTNLDEFGMGSSTEHSAFFPTKNPFDPDRVPGGSSGGSAAALAADLAPLALGSDTGGSVRQPAAFCGVYGLKPTYGRVSRFGLIAYASSLDQIGPMARSVRDL 210          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_THET2 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=gatA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 5.369e-14
Identity = 41/109 (37.61%), Postives = 58/109 (53.21%), Query Frame = 1
Query:  424 GATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKIL 750
            GA  +GKT +DEF    +  +  +    NP  P ++P             DL   +LG DT G VR P+AFCG+ G +P+YG VS  G+I  ++SLD +G  AR  + L
Sbjct:  102 GALVLGKTNLDEFGMGSSTEHSAFFPTKNPFDPDRVPGGSSGGSAAALAADLAPLALGSDTGGSVRQPAAFCGVYGLKPTYGRVSRFGLIAYASSLDQIGPMARSVRDL 210          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_ACIC5 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) GN=gatA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 5.369e-14
Identity = 40/107 (37.38%), Postives = 58/107 (54.21%), Query Frame = 1
Query:  412 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFA 732
            L++ GA  +GK   DEFA   +  N  Y    NP A  ++P             ++   +LG DT G +R P++FCG++G  P+YG VS  G+I  ++SLD VG FA
Sbjct:  109 LIDAGAVLVGKLNCDEFAMGSSNENSAYGPVKNPRALDRVPGGSSGGSAAAVAANMAVATLGTDTGGSIRQPASFCGVVGVLPTYGRVSRYGLIAFASSLDRVGPFA 215          
The following BLAST results are available for this feature:
BLAST of DY262655 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 302
Match NameE-valueIdentityDescription
GATA_METMP2.410e-1439.00Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_METVS3.147e-1438.00Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_METM53.147e-1439.00Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_SYNR34.111e-1435.19Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_METMA4.111e-1429.17Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_EXISA4.111e-1437.04Glutamyl-tRNA(Gln) amidotransferase subunit A OS=E... [more]
HYIN_PSESS5.369e-1438.46Indoleacetamide hydrolase OS=Pseudomonas syringae ... [more]
GATA_THET85.369e-1437.61Glutamyl-tRNA(Gln) amidotransferase subunit A OS=T... [more]
GATA_THET25.369e-1437.61Glutamyl-tRNA(Gln) amidotransferase subunit A OS=T... [more]
GATA_ACIC55.369e-1437.38Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA100CC10RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262655 ID=DY262655; Name=DY262655; organism=Citrus clementina; type=EST; length=1289bp
CAGCTTCAGGTTGCTCCTCTCCTCCTCGAGCTCTTAGGTTTTGATAGCAG
TGCGTGTGGGTGCTGCTTCCTTGTTTGGTTAAAGTTCAAATTAAGAATTA
TATCGAGTTCCTATATGGCTTCTCAATCTGCTAATTTATGGGTATTGTTG
GGTCTGGGTTTAGCTGGAATTCTGCTAATGACTAAAAAGCTTAAGAAGAA
TATAAAACAAGATTTTGGAGCGTTCATCGAGAAACTTCAACTGCTTCCTC
CGCCTCAGCCCCTTCCTCCAAAAGCCCCTCATCCTCTTACCGGCCTCTCT
TTTGCCGTCTCTGACCTATTCGATATCGAAGGATACGTGACTGGTTTTGG
GCATCCAGAGTGGGCCCGGACGCACAGTGCAGCTTCTCGAACGTCTACTG
TGGTTTCCACCCTCGTCGAAGGAGGTGCCACTTGCATTGGCAAAACTGTG
GTTGATGAATTTGCCTACAGTATAAATGGAACAAATAAGCATTATGATAC
GCCTACTAATCCTGCTGCACCTTCACAAATGCCGGGTGGATCTTCTAGTG
GGGCTGCTGTGGCCGTTGCTGCTGATCTTGTTGATTTCTCCTTGGGTATT
GATACTGTTGGAGGTGTGAGGGTACCTTCTGCATTTTGTGGAATTTTAGG
GTTCCGGCCCTCCTATGGGGCTGTTTCCCACATGGGGATTATACCCATTT
CAACAAGTCTTGATACTGTTGGTTGGTTTGCTAGGGATCCTAAAATTCTG
CGTCATGTTGGCCATGTGTTGCTGCAACTTCCATTTGCAGCTCAACGTAG
TCCAAGACAAATTATAATTGCTGATGATTGTTTTGAGCTCTTGAAGATTC
CTGCTGACAGGGTTGTTCAGGTGGTAATTAAGTCAACTGAGAAACTTTTT
GGGAGACAAGTGTTTGAGCATGAAAACCTCGGAGAATATTTTGAATCTAA
AGTTCCAAGCTTGAAAGGGTTTCACAAAACAAATGGTGAACTAAAAAATG
TTATTGCGTTAAATCCACCGATATGAATTCAAAAATAATCAAAATGGATG
GAATTGAATCAAAAAAACCCGCCTCAAATTCTGAAATTCTCTTGCAAAAT
TGAAAAAATGTTGAAAAATTAAGAAAAAGTGGAAAAAAAATGTGCAATTC
CTTTTGAAAAAAAATTGCGTTTTACCATTTAATTTCTTCCTTTTAAAAAA
AGAAAGGGAATTTTTTTGGTAACCCTTCTCACCTGTCTATATCCTCCCTC
TCCAAAACTTTTTGGGGGGGAAAAAGAAAAAAATTTTTT
back to top