DY262655

Overview
NameDY262655
Unique NameDY262655
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1289
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_CAMJD (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=gatA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.477e-11
Identity = 39/104 (37.50%), Postives = 51/104 (49.04%), Query Frame = 1 
Query:  412 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVG 723
            L   G    G+  +DEFA   +  +  Y    NP    ++P              L   SLG DT G VR P+AFCG +GF+PSYG VS  G+   S+SLD +G
Sbjct:   88 LKANGFAPFGRCNMDEFAMGSSTASSCYGKTLNPLNFERVPGGSSGGSAAAVAGGLALASLGSDTGGSVRQPAAFCGCVGFKPSYGRVSRYGLASYSSSLDQIG 191
[Close]
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_CAMC5 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Campylobacter curvus (strain 525.92) GN=gatA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.477e-11
Identity = 36/109 (33.03%), Postives = 54/109 (49.54%), Query Frame = 1 
Query:  412 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARD 738
            L+       G+T +DEFA      +  Y    NP   + +P              +   +LG DT G +R P+AFCG +GF+P+YG VS  G+   S+SLD +G  A++
Sbjct:   88 LLARNLAAFGRTNMDEFAMGSTTESSFYGHTLNPLNHAHVPGGSSGGSAAAVAGGIAIAALGSDTGGSIRQPAAFCGCVGFKPTYGRVSRYGLAAYSSSLDQIGPIAQN 196
The following BLAST results are available for this feature:
BLAST of DY262655 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 302
Match NameE-valueIdentityDescription
GATA_CAMJD9.477e-1137.50Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_CAMC59.477e-1133.03Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100CC10RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262655 ID=DY262655; Name=DY262655; organism=Citrus clementina; type=EST; length=1289bp
CAGCTTCAGGTTGCTCCTCTCCTCCTCGAGCTCTTAGGTTTTGATAGCAG
TGCGTGTGGGTGCTGCTTCCTTGTTTGGTTAAAGTTCAAATTAAGAATTA
TATCGAGTTCCTATATGGCTTCTCAATCTGCTAATTTATGGGTATTGTTG
GGTCTGGGTTTAGCTGGAATTCTGCTAATGACTAAAAAGCTTAAGAAGAA
TATAAAACAAGATTTTGGAGCGTTCATCGAGAAACTTCAACTGCTTCCTC
CGCCTCAGCCCCTTCCTCCAAAAGCCCCTCATCCTCTTACCGGCCTCTCT
TTTGCCGTCTCTGACCTATTCGATATCGAAGGATACGTGACTGGTTTTGG
GCATCCAGAGTGGGCCCGGACGCACAGTGCAGCTTCTCGAACGTCTACTG
TGGTTTCCACCCTCGTCGAAGGAGGTGCCACTTGCATTGGCAAAACTGTG
GTTGATGAATTTGCCTACAGTATAAATGGAACAAATAAGCATTATGATAC
GCCTACTAATCCTGCTGCACCTTCACAAATGCCGGGTGGATCTTCTAGTG
GGGCTGCTGTGGCCGTTGCTGCTGATCTTGTTGATTTCTCCTTGGGTATT
GATACTGTTGGAGGTGTGAGGGTACCTTCTGCATTTTGTGGAATTTTAGG
GTTCCGGCCCTCCTATGGGGCTGTTTCCCACATGGGGATTATACCCATTT
CAACAAGTCTTGATACTGTTGGTTGGTTTGCTAGGGATCCTAAAATTCTG
CGTCATGTTGGCCATGTGTTGCTGCAACTTCCATTTGCAGCTCAACGTAG
TCCAAGACAAATTATAATTGCTGATGATTGTTTTGAGCTCTTGAAGATTC
CTGCTGACAGGGTTGTTCAGGTGGTAATTAAGTCAACTGAGAAACTTTTT
GGGAGACAAGTGTTTGAGCATGAAAACCTCGGAGAATATTTTGAATCTAA
AGTTCCAAGCTTGAAAGGGTTTCACAAAACAAATGGTGAACTAAAAAATG
TTATTGCGTTAAATCCACCGATATGAATTCAAAAATAATCAAAATGGATG
GAATTGAATCAAAAAAACCCGCCTCAAATTCTGAAATTCTCTTGCAAAAT
TGAAAAAATGTTGAAAAATTAAGAAAAAGTGGAAAAAAAATGTGCAATTC
CTTTTGAAAAAAAATTGCGTTTTACCATTTAATTTCTTCCTTTTAAAAAA
AGAAAGGGAATTTTTTTGGTAACCCTTCTCACCTGTCTATATCCTCCCTC
TCCAAAACTTTTTGGGGGGGAAAAAGAAAAAAATTTTTT
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