DY262655

Overview
NameDY262655
Unique NameDY262655
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1289
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_ACAM1 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Acaryochloris marina (strain MBIC 11017) GN=gatA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 5.369e-14
Identity = 40/108 (37.04%), Postives = 57/108 (52.78%), Query Frame = 1
Query:  412 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 735
            L   GA  +GKT +DEFA   +  N  Y    NP   S++P             D    S+G DT G +R P+A CG++G +P+YG VS  G++  ++SLD +G F R
Sbjct:  107 LAAAGAVMVGKTNLDEFAMGSSTENSAYQVTGNPWDVSRVPGGSSGGSAAAVAADECVVSIGSDTGGSIRQPAALCGVVGLKPTYGLVSRFGLVAYASSLDQIGPFGR 214          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: HYIN_PSESY (Indoleacetamide hydrolase OS=Pseudomonas syringae pv. syringae GN=iaaH PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 7.012e-14
Identity = 39/104 (37.50%), Postives = 53/104 (50.96%), Query Frame = 1
Query:  424 GATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 735
            GA   GK  + E ++ +   N H+    NP AP                  +V  S+G DT G +R+P+AFCGI GFRP+ G +S  GIIP+S + D VG   R
Sbjct:  107 GAVVAGKNNMHELSFGVTSINPHWGAVGNPVAPGYCAGGSSGGSAAAVASGIVPLSVGTDTGGSIRIPAAFCGITGFRPTTGRLSTAGIIPVSHTKDCVGLLTR 210          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_THETN (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Thermoanaerobacter tengcongensis GN=gatA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 7.012e-14
Identity = 38/109 (34.86%), Postives = 60/109 (55.05%), Query Frame = 1
Query:  412 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARD 738
            L+  G   +GK+ +DEFA   +  N  + T  NP   S++P             D   F+LG DT G +R P++ CG++G +P+YG VS  G++  ++SLD +G F +D
Sbjct:  110 LLNEGVVILGKSNLDEFAMGSSTENSAFKTTKNPWDLSRVPGGSSGGSAAAVAADEAAFALGSDTGGSIRQPASLCGVVGMKPTYGLVSRYGLVAFASSLDQIGPFTKD 218          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_METS3 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=gatA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 7.012e-14
Identity = 37/101 (36.63%), Postives = 58/101 (57.43%), Query Frame = 1
Query:  436 IGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARD 738
            +G T +DEFA   +     +    NPAAP ++P             ++ D +LG DT G +R P++ CG++GF+P+YGAVS  G++ +S SLD +G  + D
Sbjct:  114 LGITNMDEFAAGSSTETSCFGPTQNPAAPGRIPGGSSGGSAAAVAAEMCDIALGSDTGGSIRNPASHCGVVGFKPTYGAVSRQGLLDLSMSLDQIGPLSND 214          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_ANAVT (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=gatA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 7.012e-14
Identity = 38/108 (35.19%), Postives = 60/108 (55.56%), Query Frame = 1
Query:  412 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 735
            L++ GA  +GKT +DEFA   +  N  Y    NP   S++P             +    +LG DT G +R P++FCG++G +P+YG VS  G++  ++SLD +G F +
Sbjct:  107 LLDAGAVVVGKTNLDEFAMGSSTENSAYQVTANPWDLSRVPGGSSGGSAAAVAAEECVVALGSDTGGSIRQPASFCGVVGLKPTYGLVSRYGLVAYASSLDQIGPFGK 214          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_ANASP (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Anabaena sp. (strain PCC 7120) GN=gatA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 7.012e-14
Identity = 38/108 (35.19%), Postives = 60/108 (55.56%), Query Frame = 1
Query:  412 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 735
            L++ GA  +GKT +DEFA   +  N  Y    NP   S++P             +    +LG DT G +R P++FCG++G +P+YG VS  G++  ++SLD +G F +
Sbjct:  107 LLDAGAVVVGKTNLDEFAMGSSTENSAYQVTANPWDLSRVPGGSSGGSAAAVAAEECVVALGSDTGGSIRQPASFCGVVGLKPTYGLVSRYGLVAYASSLDQIGPFGK 214          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_SYNY3 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Synechocystis sp. (strain PCC 6803) GN=gatA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 9.158e-14
Identity = 39/108 (36.11%), Postives = 59/108 (54.63%), Query Frame = 1
Query:  412 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 735
            L + GA  +GKT +DEFA   +  N  Y    NP   +++P             D    +LG DT G +R P++ CG++G +P+YG VS  G++  ++SLD +G FAR
Sbjct:  107 LQKAGAVMVGKTNLDEFAMGSSTENSGYQVTANPWDLTRVPGGSSGGSAAAVAADECLIALGSDTGGSIRQPASLCGVVGMKPTYGLVSRFGLVAYASSLDQIGPFAR 214          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_STACT (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Staphylococcus carnosus (strain TM300) GN=gatA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 9.158e-14
Identity = 41/111 (36.94%), Postives = 59/111 (53.15%), Query Frame = 1
Query:  412 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPK 744
            L +  A  IGK  +DEFA   +    +Y    NP   + +P              LV FSLG DT G +R P+A+CGI+G +P+YG VS  G++  ++SLD +G   R+ K
Sbjct:  111 LHDENAVLIGKLNMDEFAMGGSTETSYYKKTVNPFDHTAVPGGSSGGSAAAVAAGLVPFSLGSDTGGSIRQPAAYCGIVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVK 221          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_NOSP7 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=gatA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 9.158e-14
Identity = 39/107 (36.45%), Postives = 58/107 (54.21%), Query Frame = 1
Query:  412 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFA 732
            L + GA  +GKT +DEFA   +  N  Y    NP   S++P                  +LG DT G +R P++FCG++G +P+YG VS  G++  ++SLD +G FA
Sbjct:  107 LADAGAVMVGKTNLDEFAMGSSTENSAYQVTANPWNLSRVPGGSSGGSAAAVSSQECVVALGSDTGGSIRQPASFCGVVGMKPTYGLVSRYGLVAYASSLDQIGPFA 213          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_METTH (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanobacterium thermoautotrophicum GN=gatA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 9.158e-14
Identity = 37/101 (36.63%), Postives = 56/101 (55.45%), Query Frame = 1
Query:  436 IGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARD 738
            IG T +DEFA   +     +    NPAAP ++P              + D +LG DT G +R P++ CG++GF+P+YGAVS  G++ ++ S D +G  A D
Sbjct:  117 IGMTNMDEFAAGSSTETSFFGPTDNPAAPGRIPGGSSGGSAAAVAAGMCDLALGSDTGGSIRNPASHCGVMGFKPTYGAVSRQGLLDLAMSFDQIGPLAAD 217          
The following BLAST results are available for this feature:
BLAST of DY262655 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 302
Match NameE-valueIdentityDescription
GATA_ACAM15.369e-1437.04Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
HYIN_PSESY7.012e-1437.50Indoleacetamide hydrolase OS=Pseudomonas syringae ... [more]
GATA_THETN7.012e-1434.86Glutamyl-tRNA(Gln) amidotransferase subunit A OS=T... [more]
GATA_METS37.012e-1436.63Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_ANAVT7.012e-1435.19Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_ANASP7.012e-1435.19Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_SYNY39.158e-1436.11Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_STACT9.158e-1436.94Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_NOSP79.158e-1436.45Glutamyl-tRNA(Gln) amidotransferase subunit A OS=N... [more]
GATA_METTH9.158e-1436.63Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA100CC10RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262655 ID=DY262655; Name=DY262655; organism=Citrus clementina; type=EST; length=1289bp
CAGCTTCAGGTTGCTCCTCTCCTCCTCGAGCTCTTAGGTTTTGATAGCAG
TGCGTGTGGGTGCTGCTTCCTTGTTTGGTTAAAGTTCAAATTAAGAATTA
TATCGAGTTCCTATATGGCTTCTCAATCTGCTAATTTATGGGTATTGTTG
GGTCTGGGTTTAGCTGGAATTCTGCTAATGACTAAAAAGCTTAAGAAGAA
TATAAAACAAGATTTTGGAGCGTTCATCGAGAAACTTCAACTGCTTCCTC
CGCCTCAGCCCCTTCCTCCAAAAGCCCCTCATCCTCTTACCGGCCTCTCT
TTTGCCGTCTCTGACCTATTCGATATCGAAGGATACGTGACTGGTTTTGG
GCATCCAGAGTGGGCCCGGACGCACAGTGCAGCTTCTCGAACGTCTACTG
TGGTTTCCACCCTCGTCGAAGGAGGTGCCACTTGCATTGGCAAAACTGTG
GTTGATGAATTTGCCTACAGTATAAATGGAACAAATAAGCATTATGATAC
GCCTACTAATCCTGCTGCACCTTCACAAATGCCGGGTGGATCTTCTAGTG
GGGCTGCTGTGGCCGTTGCTGCTGATCTTGTTGATTTCTCCTTGGGTATT
GATACTGTTGGAGGTGTGAGGGTACCTTCTGCATTTTGTGGAATTTTAGG
GTTCCGGCCCTCCTATGGGGCTGTTTCCCACATGGGGATTATACCCATTT
CAACAAGTCTTGATACTGTTGGTTGGTTTGCTAGGGATCCTAAAATTCTG
CGTCATGTTGGCCATGTGTTGCTGCAACTTCCATTTGCAGCTCAACGTAG
TCCAAGACAAATTATAATTGCTGATGATTGTTTTGAGCTCTTGAAGATTC
CTGCTGACAGGGTTGTTCAGGTGGTAATTAAGTCAACTGAGAAACTTTTT
GGGAGACAAGTGTTTGAGCATGAAAACCTCGGAGAATATTTTGAATCTAA
AGTTCCAAGCTTGAAAGGGTTTCACAAAACAAATGGTGAACTAAAAAATG
TTATTGCGTTAAATCCACCGATATGAATTCAAAAATAATCAAAATGGATG
GAATTGAATCAAAAAAACCCGCCTCAAATTCTGAAATTCTCTTGCAAAAT
TGAAAAAATGTTGAAAAATTAAGAAAAAGTGGAAAAAAAATGTGCAATTC
CTTTTGAAAAAAAATTGCGTTTTACCATTTAATTTCTTCCTTTTAAAAAA
AGAAAGGGAATTTTTTTGGTAACCCTTCTCACCTGTCTATATCCTCCCTC
TCCAAAACTTTTTGGGGGGGAAAAAGAAAAAAATTTTTT
back to top