DY262655

Overview
NameDY262655
Unique NameDY262655
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1289
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_EUBR3 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Eubacterium rectale (strain ATCC 33656 / VPI 0990) GN=gatA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.562e-13
Identity = 39/109 (35.78%), Postives = 55/109 (50.46%), Query Frame = 1
Query:  412 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARD 738
            L + G   +GKT +DEFA         +    NP     +P             + V F+LG DT G +R PS+FCG+ G +P+YG VS  G+I   +SLD +G  A+D
Sbjct:  111 LEDAGCVIVGKTNMDEFAMGSTTETSAFGATKNPWNTEHVPGGSSGGSCAAVAAEEVPFALGSDTGGSIRQPSSFCGVTGIKPTYGTVSRYGLIAYGSSLDQIGPIAKD 219          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_DESAD (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) GN=gatA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.562e-13
Identity = 41/108 (37.96%), Postives = 56/108 (51.85%), Query Frame = 1
Query:  412 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 735
            L E GA  +GK  +DEFA      N  Y T TNP   S++P                  +LG DT G +R+P++FCG +G +P+YG VS  G+I   +SLD +G   R
Sbjct:  110 LKEAGAIIVGKANMDEFAMGSTTENSAYQTTTNPWDASRVPGGSSGGSGATVAAGQCYAALGTDTGGSIRLPASFCGCVGVKPTYGRVSRYGMIAYGSSLDQIGPMTR 217          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_STAS1 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=gatA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.040e-13
Identity = 40/106 (37.74%), Postives = 56/106 (52.83%), Query Frame = 1
Query:  427 ATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPK 744
            A  IGK  +DEFA   +    +Y    NP   + +P              LV FSLG DT G +R P+A+CGI+G +P+YG VS  G++  ++SLD +G   R  K
Sbjct:  116 AVLIGKLNMDEFAMGGSTETSYYKKTVNPFDHTAVPGGSSGGSAAAVAAGLVPFSLGSDTGGSIRQPAAYCGIVGLKPTYGRVSRFGLVAFASSLDQIGPLTRTVK 221          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_HAHCH (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Hahella chejuensis (strain KCTC 2396) GN=gatA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.040e-13
Identity = 46/148 (31.08%), Postives = 67/148 (45.27%), Query Frame = 1
Query:  292 GLSFAVSDLFDIEGYVTGFGHPEWXXXXXXXXXXXXXXXXLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 735
            G+  A  D+F  EG  T  G                     ++ GA  +GKT +DEFA   +  N ++    NP    + P              L   + G DT G +R P+AFCG+ G +P+YG VS +G++  ++SLD  G FAR
Sbjct:   70 GVPLAHKDVFCTEGVTTTCGSR--MLEKFVPPYESTVTRKFIDAGAVTLGKTNMDEFAMGSSNENSYFGPVRNPWDTERAPGGSSGGSAAAVAAGLCAAATGTDTGGSIRQPAAFCGLTGLKPTYGRVSRLGMVAFASSLDQGGPFAR 215          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_GEOSW (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Geobacillus sp. (strain WCH70) GN=gatA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.040e-13
Identity = 40/108 (37.04%), Postives = 57/108 (52.78%), Query Frame = 1
Query:  412 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 735
            L E GA  IGK  +DEFA   +  N  +    NP    ++P               V F+LG DT G +R P+AFCG++G +P+YG VS  G++  ++SLD +G   R
Sbjct:  112 LNEAGAITIGKLNMDEFAMGSSTENSGFQLTRNPWDLERVPGGSSGGSAAAVAAGEVPFALGSDTGGSIRQPAAFCGVVGLKPTYGRVSRFGLVAFASSLDQIGPITR 219          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_NATTJ (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=gatA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.665e-13
Identity = 37/104 (35.58%), Postives = 57/104 (54.81%), Query Frame = 1
Query:  412 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVG 723
            L E GA  +GKT +DEFA   +  N  +   +NP    ++P               V  +LG DT G +R P++FCG++G +P+YG VS  G++  ++SLD +G
Sbjct:  111 LAEAGAIIVGKTNMDEFAMGSSTENSAFFVTSNPWDTERVPGGSSGGSAASVASAQVPLALGSDTGGSIRQPASFCGVVGMKPTYGRVSRYGLVAFASSLDQIG 214          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_METBF (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=gatA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.665e-13
Identity = 39/109 (35.78%), Postives = 58/109 (53.21%), Query Frame = 1
Query:  412 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARD 738
            L+  GA  +GKT +DEFA   +    ++    NP    ++P                 F+LG DT G VR P+AFCG++G +P+YGAVS  G++  + SL+ VG  A +
Sbjct:  101 LLAAGAVILGKTNMDEFAMGSSTETSYFGPTANPWDLERVPGGSSGGSAAVVAAGEAPFALGSDTGGSVRCPAAFCGVVGLKPTYGAVSRYGVVAYANSLEQVGPLANN 209          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_MARMS (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Marinomonas sp. (strain MWYL1) GN=gatA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.665e-13
Identity = 49/157 (31.21%), Postives = 69/157 (43.95%), Query Frame = 1
Query:  289 TGLSFAVSDLFDIEGYVTGFGHPEWXXXXXXXXXXXXXXXXLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHV 759
            TG+  A  DLF  EG +T  G                    + + GA  +GKT +DEFA   +  N  Y    NP     +P              L   + G DT G +R P++FCGI G +P+YG VS  G+I  ++SLD  G  A+  +   H+
Sbjct:   69 TGIPVAHKDLFCTEGTLTTCGSK--MLHNFVPPYESTVTSRIQQAGAVMLGKTNMDEFAMGSSNENSFYGAVKNPWNLDMVPGGSSGGSAAAIAAGLAVAATGTDTGGSIRQPASFCGITGLKPTYGRVSRFGMIAYASSLDQGGPMAKSAEDCAHL 223          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_CYAP7 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Cyanothece sp. (strain PCC 7424) GN=gatA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.665e-13
Identity = 38/108 (35.19%), Postives = 60/108 (55.56%), Query Frame = 1
Query:  412 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 735
            L + GA  +GKT +DEFA   +  +  Y    NP   S++P             +    +LG DT G +R P+++CG++G +P+YG VS  G++  ++SLD +G FAR
Sbjct:  107 LKDSGAITLGKTNLDEFAMGSSTESSGYQVTANPWDLSRVPGGSSGGSAAAVASEECVVALGSDTGGSIRQPASYCGVVGLKPTYGLVSRFGLVAYASSLDQIGPFAR 214          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_SYNAS (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Syntrophus aciditrophicus (strain SB) GN=gatA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 3.480e-13
Identity = 47/150 (31.33%), Postives = 68/150 (45.33%), Query Frame = 1
Query:  289 TGLSFAVSDLFDIEGYVTGFGHPEWXXXXXXXXXXXXXXXXLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARD 738
            TG+  A+ D++   G  T  G                    L E GA   GKT +DEFA   +    +Y    NP    ++P             D    +LG DT G +R P+A CG++G +P+YG VS  G+I  ++SLD +G F +D
Sbjct:   71 TGIPVALKDIYCTRGVRTTCG--SLILDNFIPPYDATVVVKLREAGAVFTGKTNMDEFAMGSSTETSYYGFTRNPWDLERIPGGSSGGSAAAVAADECIAALGSDTGGSIRQPAALCGVVGMKPTYGRVSRFGLIAFASSLDQIGPFTKD 218          
The following BLAST results are available for this feature:
BLAST of DY262655 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 302
Match NameE-valueIdentityDescription
GATA_EUBR31.562e-1335.78Glutamyl-tRNA(Gln) amidotransferase subunit A OS=E... [more]
GATA_DESAD1.562e-1337.96Glutamyl-tRNA(Gln) amidotransferase subunit A OS=D... [more]
GATA_STAS12.040e-1337.74Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_HAHCH2.040e-1331.08Glutamyl-tRNA(Gln) amidotransferase subunit A OS=H... [more]
GATA_GEOSW2.040e-1337.04Glutamyl-tRNA(Gln) amidotransferase subunit A OS=G... [more]
GATA_NATTJ2.665e-1335.58Glutamyl-tRNA(Gln) amidotransferase subunit A OS=N... [more]
GATA_METBF2.665e-1335.78Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_MARMS2.665e-1331.21Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_CYAP72.665e-1335.19Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_SYNAS3.480e-1331.33Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100CC10RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262655 ID=DY262655; Name=DY262655; organism=Citrus clementina; type=EST; length=1289bp
CAGCTTCAGGTTGCTCCTCTCCTCCTCGAGCTCTTAGGTTTTGATAGCAG
TGCGTGTGGGTGCTGCTTCCTTGTTTGGTTAAAGTTCAAATTAAGAATTA
TATCGAGTTCCTATATGGCTTCTCAATCTGCTAATTTATGGGTATTGTTG
GGTCTGGGTTTAGCTGGAATTCTGCTAATGACTAAAAAGCTTAAGAAGAA
TATAAAACAAGATTTTGGAGCGTTCATCGAGAAACTTCAACTGCTTCCTC
CGCCTCAGCCCCTTCCTCCAAAAGCCCCTCATCCTCTTACCGGCCTCTCT
TTTGCCGTCTCTGACCTATTCGATATCGAAGGATACGTGACTGGTTTTGG
GCATCCAGAGTGGGCCCGGACGCACAGTGCAGCTTCTCGAACGTCTACTG
TGGTTTCCACCCTCGTCGAAGGAGGTGCCACTTGCATTGGCAAAACTGTG
GTTGATGAATTTGCCTACAGTATAAATGGAACAAATAAGCATTATGATAC
GCCTACTAATCCTGCTGCACCTTCACAAATGCCGGGTGGATCTTCTAGTG
GGGCTGCTGTGGCCGTTGCTGCTGATCTTGTTGATTTCTCCTTGGGTATT
GATACTGTTGGAGGTGTGAGGGTACCTTCTGCATTTTGTGGAATTTTAGG
GTTCCGGCCCTCCTATGGGGCTGTTTCCCACATGGGGATTATACCCATTT
CAACAAGTCTTGATACTGTTGGTTGGTTTGCTAGGGATCCTAAAATTCTG
CGTCATGTTGGCCATGTGTTGCTGCAACTTCCATTTGCAGCTCAACGTAG
TCCAAGACAAATTATAATTGCTGATGATTGTTTTGAGCTCTTGAAGATTC
CTGCTGACAGGGTTGTTCAGGTGGTAATTAAGTCAACTGAGAAACTTTTT
GGGAGACAAGTGTTTGAGCATGAAAACCTCGGAGAATATTTTGAATCTAA
AGTTCCAAGCTTGAAAGGGTTTCACAAAACAAATGGTGAACTAAAAAATG
TTATTGCGTTAAATCCACCGATATGAATTCAAAAATAATCAAAATGGATG
GAATTGAATCAAAAAAACCCGCCTCAAATTCTGAAATTCTCTTGCAAAAT
TGAAAAAATGTTGAAAAATTAAGAAAAAGTGGAAAAAAAATGTGCAATTC
CTTTTGAAAAAAAATTGCGTTTTACCATTTAATTTCTTCCTTTTAAAAAA
AGAAAGGGAATTTTTTTGGTAACCCTTCTCACCTGTCTATATCCTCCCTC
TCCAAAACTTTTTGGGGGGGAAAAAGAAAAAAATTTTTT
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