DY262655

Overview
NameDY262655
Unique NameDY262655
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1289
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_MICAN (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Microcystis aeruginosa (strain NIES-843) GN=gatA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 3.480e-13
Identity = 38/104 (36.54%), Postives = 56/104 (53.85%), Query Frame = 1
Query:  424 GATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 735
            GA  +GKT +DEFA   +  N  Y    NP   S++P                  +LG DT G +R P++FCG++G +P+YG VS  G++  ++SLD +G F R
Sbjct:  111 GAVIVGKTNLDEFAMGSSTENSGYHVTANPWDLSRVPGGSSGGSAAAVAAQECVVALGSDTGGSIRQPASFCGVVGLKPTYGLVSRFGLVAYASSLDQIGPFGR 214          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_TRIEI (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Trichodesmium erythraeum (strain IMS101) GN=gatA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 4.545e-13
Identity = 38/111 (34.23%), Postives = 60/111 (54.05%), Query Frame = 1
Query:  412 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPK 744
            LV+ GA  +GKT +DEF    +  N  Y   TNP   +++P                  +LG DT G +R P++FCG++G +P+YG VS  G++  ++S+D +G  +R  K
Sbjct:  107 LVDAGAIILGKTNLDEFGMGSSTENSAYQVTTNPWDNTRVPGGSSGGSAAAVASAESVVALGSDTGGSIRQPASFCGVVGIKPTYGLVSRYGLVAYASSMDQIGPLSRTVK 217          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_STRZT (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Streptococcus pneumoniae (strain Taiwan19F-14) GN=gatA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 4.545e-13
Identity = 41/103 (39.81%), Postives = 54/103 (52.43%), Query Frame = 1
Query:  424 GATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFA 732
            G   +GKT +DEFA   +G   HY    N    S++P               V  SLG DT G +R P+AF GI+G +P+YG VS  G+I   +SLD +G FA
Sbjct:  113 GMIVVGKTNMDEFAMGGSGETSHYGATKNAWDHSKVPGGSSSGSAAAVASGQVRLSLGSDTGGSIRQPAAFNGIVGLKPTYGTVSRFGLIAFGSSLDQIGPFA 215          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_STRZP (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Streptococcus pneumoniae (strain P1031) GN=gatA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 4.545e-13
Identity = 41/103 (39.81%), Postives = 54/103 (52.43%), Query Frame = 1
Query:  424 GATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFA 732
            G   +GKT +DEFA   +G   HY    N    S++P               V  SLG DT G +R P+AF GI+G +P+YG VS  G+I   +SLD +G FA
Sbjct:  113 GMIVVGKTNMDEFAMGGSGETSHYGATKNAWDHSKVPGGSSSGSAAAVASGQVRLSLGSDTGGSIRQPAAFNGIVGLKPTYGTVSRFGLIAFGSSLDQIGPFA 215          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_STRZJ (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Streptococcus pneumoniae (strain JJA) GN=gatA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 4.545e-13
Identity = 41/103 (39.81%), Postives = 54/103 (52.43%), Query Frame = 1
Query:  424 GATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFA 732
            G   +GKT +DEFA   +G   HY    N    S++P               V  SLG DT G +R P+AF GI+G +P+YG VS  G+I   +SLD +G FA
Sbjct:  113 GMIVVGKTNMDEFAMGGSGETSHYGATKNAWNHSKVPGGSSSGSAAAVASGQVRLSLGSDTGGSIRQPAAFNGIVGLKPTYGTVSRFGLIAFGSSLDQIGPFA 215          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_STRR6 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=gatA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 4.545e-13
Identity = 41/103 (39.81%), Postives = 54/103 (52.43%), Query Frame = 1
Query:  424 GATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFA 732
            G   +GKT +DEFA   +G   HY    N    S++P               V  SLG DT G +R P+AF GI+G +P+YG VS  G+I   +SLD +G FA
Sbjct:  113 GMIVVGKTNMDEFAMGGSGETSHYGATKNAWDHSKVPGGSSSGSAAAVASGQVRLSLGSDTGGSIRQPAAFNGIVGLKPTYGTVSRFGLIAFGSSLDQIGPFA 215          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_STRPS (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Streptococcus pneumoniae (strain CGSP14) GN=gatA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 4.545e-13
Identity = 41/103 (39.81%), Postives = 54/103 (52.43%), Query Frame = 1
Query:  424 GATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFA 732
            G   +GKT +DEFA   +G   HY    N    S++P               V  SLG DT G +R P+AF GI+G +P+YG VS  G+I   +SLD +G FA
Sbjct:  113 GMIVVGKTNMDEFAMGGSGETSHYGATKNAWDHSKVPGGSSSGSAAAVASGQVRLSLGSDTGGSIRQPAAFNGIVGLKPTYGTVSRFGLIAFGSSLDQIGPFA 215          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_STRPN (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Streptococcus pneumoniae GN=gatA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 4.545e-13
Identity = 41/103 (39.81%), Postives = 54/103 (52.43%), Query Frame = 1
Query:  424 GATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFA 732
            G   +GKT +DEFA   +G   HY    N    S++P               V  SLG DT G +R P+AF GI+G +P+YG VS  G+I   +SLD +G FA
Sbjct:  113 GMIVVGKTNMDEFAMGGSGETSHYGATKNAWNHSKVPGGSSSGSAAAVASGQVRLSLGSDTGGSIRQPAAFNGIVGLKPTYGTVSRFGLIAFGSSLDQIGPFA 215          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_STRPJ (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Streptococcus pneumoniae (strain ATCC 700669 / Spain 23F-1) GN=gatA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 4.545e-13
Identity = 41/103 (39.81%), Postives = 54/103 (52.43%), Query Frame = 1
Query:  424 GATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFA 732
            G   +GKT +DEFA   +G   HY    N    S++P               V  SLG DT G +R P+AF GI+G +P+YG VS  G+I   +SLD +G FA
Sbjct:  113 GMIVVGKTNMDEFAMGGSGETSHYGATKNAWDHSKVPGGSSSGSAAAVASGQVRLSLGSDTGGSIRQPAAFNGIVGLKPTYGTVSRFGLIAFGSSLDQIGPFA 215          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_STRPI (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Streptococcus pneumoniae (strain Hungary19A-6) GN=gatA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 4.545e-13
Identity = 41/103 (39.81%), Postives = 54/103 (52.43%), Query Frame = 1
Query:  424 GATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFA 732
            G   +GKT +DEFA   +G   HY    N    S++P               V  SLG DT G +R P+AF GI+G +P+YG VS  G+I   +SLD +G FA
Sbjct:  113 GMIVVGKTNMDEFAMGGSGETSHYGATKNAWDHSKVPGGSSSGSAAAVASGQVRLSLGSDTGGSIRQPAAFNGIVGLKPTYGTVSRFGLIAFGSSLDQIGPFA 215          
The following BLAST results are available for this feature:
BLAST of DY262655 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 302
Match NameE-valueIdentityDescription
GATA_MICAN3.480e-1336.54Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_TRIEI4.545e-1334.23Glutamyl-tRNA(Gln) amidotransferase subunit A OS=T... [more]
GATA_STRZT4.545e-1339.81Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_STRZP4.545e-1339.81Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_STRZJ4.545e-1339.81Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_STRR64.545e-1339.81Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_STRPS4.545e-1339.81Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_STRPN4.545e-1339.81Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_STRPJ4.545e-1339.81Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_STRPI4.545e-1339.81Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA100CC10RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262655 ID=DY262655; Name=DY262655; organism=Citrus clementina; type=EST; length=1289bp
CAGCTTCAGGTTGCTCCTCTCCTCCTCGAGCTCTTAGGTTTTGATAGCAG
TGCGTGTGGGTGCTGCTTCCTTGTTTGGTTAAAGTTCAAATTAAGAATTA
TATCGAGTTCCTATATGGCTTCTCAATCTGCTAATTTATGGGTATTGTTG
GGTCTGGGTTTAGCTGGAATTCTGCTAATGACTAAAAAGCTTAAGAAGAA
TATAAAACAAGATTTTGGAGCGTTCATCGAGAAACTTCAACTGCTTCCTC
CGCCTCAGCCCCTTCCTCCAAAAGCCCCTCATCCTCTTACCGGCCTCTCT
TTTGCCGTCTCTGACCTATTCGATATCGAAGGATACGTGACTGGTTTTGG
GCATCCAGAGTGGGCCCGGACGCACAGTGCAGCTTCTCGAACGTCTACTG
TGGTTTCCACCCTCGTCGAAGGAGGTGCCACTTGCATTGGCAAAACTGTG
GTTGATGAATTTGCCTACAGTATAAATGGAACAAATAAGCATTATGATAC
GCCTACTAATCCTGCTGCACCTTCACAAATGCCGGGTGGATCTTCTAGTG
GGGCTGCTGTGGCCGTTGCTGCTGATCTTGTTGATTTCTCCTTGGGTATT
GATACTGTTGGAGGTGTGAGGGTACCTTCTGCATTTTGTGGAATTTTAGG
GTTCCGGCCCTCCTATGGGGCTGTTTCCCACATGGGGATTATACCCATTT
CAACAAGTCTTGATACTGTTGGTTGGTTTGCTAGGGATCCTAAAATTCTG
CGTCATGTTGGCCATGTGTTGCTGCAACTTCCATTTGCAGCTCAACGTAG
TCCAAGACAAATTATAATTGCTGATGATTGTTTTGAGCTCTTGAAGATTC
CTGCTGACAGGGTTGTTCAGGTGGTAATTAAGTCAACTGAGAAACTTTTT
GGGAGACAAGTGTTTGAGCATGAAAACCTCGGAGAATATTTTGAATCTAA
AGTTCCAAGCTTGAAAGGGTTTCACAAAACAAATGGTGAACTAAAAAATG
TTATTGCGTTAAATCCACCGATATGAATTCAAAAATAATCAAAATGGATG
GAATTGAATCAAAAAAACCCGCCTCAAATTCTGAAATTCTCTTGCAAAAT
TGAAAAAATGTTGAAAAATTAAGAAAAAGTGGAAAAAAAATGTGCAATTC
CTTTTGAAAAAAAATTGCGTTTTACCATTTAATTTCTTCCTTTTAAAAAA
AGAAAGGGAATTTTTTTGGTAACCCTTCTCACCTGTCTATATCCTCCCTC
TCCAAAACTTTTTGGGGGGGAAAAAGAAAAAAATTTTTT
back to top