DY262655

Overview
NameDY262655
Unique NameDY262655
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1289
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_STRP7 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Streptococcus pneumoniae (strain 70585) GN=gatA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 4.545e-13
Identity = 41/103 (39.81%), Postives = 54/103 (52.43%), Query Frame = 1
Query:  424 GATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFA 732
            G   +GKT +DEFA   +G   HY    N    S++P               V  SLG DT G +R P+AF GI+G +P+YG VS  G+I   +SLD +G FA
Sbjct:  113 GMIVVGKTNMDEFAMGGSGETSHYGATKNAWDHSKVPGGSSSGSAAAVASGQVRLSLGSDTGGSIRQPAAFNGIVGLKPTYGTVSRFGLIAFGSSLDQIGPFA 215          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_STRP4 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Streptococcus pneumoniae serotype 19F (strain G54) GN=gatA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 4.545e-13
Identity = 41/103 (39.81%), Postives = 54/103 (52.43%), Query Frame = 1
Query:  424 GATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFA 732
            G   +GKT +DEFA   +G   HY    N    S++P               V  SLG DT G +R P+AF GI+G +P+YG VS  G+I   +SLD +G FA
Sbjct:  113 GMIVVGKTNMDEFAMGGSGETSHYGATKNAWDHSKVPGGSSSGSAAAVASGQVRLSLGSDTGGSIRQPAAFNGIVGLKPTYGTVSRFGLIAFGSSLDQIGPFA 215          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_STRP2 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) GN=gatA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 4.545e-13
Identity = 41/103 (39.81%), Postives = 54/103 (52.43%), Query Frame = 1
Query:  424 GATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFA 732
            G   +GKT +DEFA   +G   HY    N    S++P               V  SLG DT G +R P+AF GI+G +P+YG VS  G+I   +SLD +G FA
Sbjct:  113 GMIVVGKTNMDEFAMGGSGETSHYGATKNAWDHSKVPGGSSSGSAAAVASGQVRLSLGSDTGGSIRQPAAFNGIVGLKPTYGTVSRFGLIAFGSSLDQIGPFA 215          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_STAHJ (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Staphylococcus haemolyticus (strain JCSC1435) GN=gatA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 4.545e-13
Identity = 39/111 (35.14%), Postives = 59/111 (53.15%), Query Frame = 1
Query:  412 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPK 744
            L +  A  IGK  +DEFA   +    ++    NP   + +P              LV FSLG DT G +R P+A+CG++G +P+YG VS  G++  ++SLD +G   R+ K
Sbjct:  111 LHDENAILIGKLNMDEFAMGGSTETSYFKQTVNPFDHTAVPGGSSGGSAAAVAAGLVPFSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPITRNVK 221          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_PROMT (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Prochlorococcus marinus (strain NATL2A) GN=gatA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 4.545e-13
Identity = 41/109 (37.61%), Postives = 59/109 (54.13%), Query Frame = 1
Query:  412 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARD 738
            L+  GA  IGKT +DEFA   +     +    NP   +++P              L   SLG DT G +R P++FCG++G +P+YG VS  G+I  ++SLD VG FA +
Sbjct:  106 LLNAGAIMIGKTNMDEFAMGSSTETSAFGPTLNPWNITKVPGGSSGGSAASVAAGLCYGSLGSDTGGSIRQPASFCGVVGMKPTYGRVSRWGLIAFASSLDQVGPFANN 214          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_PROM1 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Prochlorococcus marinus (strain NATL1A) GN=gatA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 4.545e-13
Identity = 41/109 (37.61%), Postives = 59/109 (54.13%), Query Frame = 1
Query:  412 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARD 738
            L+  GA  IGKT +DEFA   +     +    NP   +++P              L   SLG DT G +R P++FCG++G +P+YG VS  G+I  ++SLD VG FA +
Sbjct:  106 LLNAGAIMIGKTNMDEFAMGSSTETSAFGPTLNPWNITKVPGGSSGGSAASVAAGLCYGSLGSDTGGSIRQPASFCGVVGMKPTYGRVSRWGLIAFASSLDQVGPFANN 214          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_MARAV (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=gatA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 4.545e-13
Identity = 50/153 (32.68%), Postives = 66/153 (43.14%), Query Frame = 1
Query:  289 TGLSFAVSDLFDIEGYVTGFGHPEWXXXXXXXXXXXXXXXXLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNP----AAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 735
            TG+ FA  D+F   G  T  G                        GA C+GKT +DEFA   +  +  Y   TNP        ++P              LV  + G DT G +R P+A CGI G +P+YG VS  G+I  ++SLD  G  AR
Sbjct:   69 TGVPFAHKDIFCTSGIRTSCGSK--MLDNFVPPYDATVTANFKAAGAVCLGKTNMDEFAMGSSNESSFYGAVTNPWGLSGGDKRVPGGSSGGSAAAVAARLVPAATGTDTGGSIRQPAALCGITGLKPTYGRVSRYGMIAFASSLDQGGPMAR 219          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_MACCJ (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Macrococcus caseolyticus (strain JCSC5402) GN=gatA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 4.545e-13
Identity = 37/103 (35.92%), Postives = 55/103 (53.40%), Query Frame = 1
Query:  436 IGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPK 744
            +GK  +DEFA   +  N  Y    NP     +P              LV FSLG DT G +R P+++CG++G +P+YG VS  G++  ++SLD +G   R+ K
Sbjct:  115 VGKLNMDEFAMGGSTENSFYKKTVNPFDHKAVPGGSSGGSAAAVAASLVPFSLGSDTGGSIRQPASYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPITRNVK 217          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_HALMA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Haloarcula marismortui GN=gatA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 4.545e-13
Identity = 38/104 (36.54%), Postives = 54/104 (51.92%), Query Frame = 1
Query:  412 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVG 723
            L + GAT  GKT +DEF          +    NPAA  ++P                D +LG DT G +R P+AFCG++G +P+YG VS  G+I  + SL+ +G
Sbjct:   61 LKDAGATIPGKTNMDEFGMGTTTETSAFGAVENPAAEGRVPGGSSGGSAAVVAAGDADLALGSDTGGSIRCPAAFCGVVGIKPTYGLVSRYGLIAYANSLEQIG 164          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_GEOTN (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Geobacillus thermodenitrificans (strain NG80-2) GN=gatA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 4.545e-13
Identity = 39/104 (37.50%), Postives = 55/104 (52.88%), Query Frame = 1
Query:  424 GATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 735
            GA  IGK  +DEFA   +  N  +    NP    ++P               V FSLG DT G +R P+AFCG++G +P+YG VS  G++  ++SLD +G   R
Sbjct:  115 GAITIGKLNMDEFAMGSSTENSGFQLTRNPWDLERVPGGSSGGSAAAVAAGEVPFSLGSDTGGSIRQPAAFCGVVGLKPTYGRVSRFGLVAFASSLDQIGPITR 218          
The following BLAST results are available for this feature:
BLAST of DY262655 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 302
Match NameE-valueIdentityDescription
GATA_STRP74.545e-1339.81Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_STRP44.545e-1339.81Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_STRP24.545e-1339.81Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_STAHJ4.545e-1335.14Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_PROMT4.545e-1337.61Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_PROM14.545e-1337.61Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_MARAV4.545e-1332.68Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_MACCJ4.545e-1335.92Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_HALMA4.545e-1336.54Glutamyl-tRNA(Gln) amidotransferase subunit A OS=H... [more]
GATA_GEOTN4.545e-1337.50Glutamyl-tRNA(Gln) amidotransferase subunit A OS=G... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100CC10RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262655 ID=DY262655; Name=DY262655; organism=Citrus clementina; type=EST; length=1289bp
CAGCTTCAGGTTGCTCCTCTCCTCCTCGAGCTCTTAGGTTTTGATAGCAG
TGCGTGTGGGTGCTGCTTCCTTGTTTGGTTAAAGTTCAAATTAAGAATTA
TATCGAGTTCCTATATGGCTTCTCAATCTGCTAATTTATGGGTATTGTTG
GGTCTGGGTTTAGCTGGAATTCTGCTAATGACTAAAAAGCTTAAGAAGAA
TATAAAACAAGATTTTGGAGCGTTCATCGAGAAACTTCAACTGCTTCCTC
CGCCTCAGCCCCTTCCTCCAAAAGCCCCTCATCCTCTTACCGGCCTCTCT
TTTGCCGTCTCTGACCTATTCGATATCGAAGGATACGTGACTGGTTTTGG
GCATCCAGAGTGGGCCCGGACGCACAGTGCAGCTTCTCGAACGTCTACTG
TGGTTTCCACCCTCGTCGAAGGAGGTGCCACTTGCATTGGCAAAACTGTG
GTTGATGAATTTGCCTACAGTATAAATGGAACAAATAAGCATTATGATAC
GCCTACTAATCCTGCTGCACCTTCACAAATGCCGGGTGGATCTTCTAGTG
GGGCTGCTGTGGCCGTTGCTGCTGATCTTGTTGATTTCTCCTTGGGTATT
GATACTGTTGGAGGTGTGAGGGTACCTTCTGCATTTTGTGGAATTTTAGG
GTTCCGGCCCTCCTATGGGGCTGTTTCCCACATGGGGATTATACCCATTT
CAACAAGTCTTGATACTGTTGGTTGGTTTGCTAGGGATCCTAAAATTCTG
CGTCATGTTGGCCATGTGTTGCTGCAACTTCCATTTGCAGCTCAACGTAG
TCCAAGACAAATTATAATTGCTGATGATTGTTTTGAGCTCTTGAAGATTC
CTGCTGACAGGGTTGTTCAGGTGGTAATTAAGTCAACTGAGAAACTTTTT
GGGAGACAAGTGTTTGAGCATGAAAACCTCGGAGAATATTTTGAATCTAA
AGTTCCAAGCTTGAAAGGGTTTCACAAAACAAATGGTGAACTAAAAAATG
TTATTGCGTTAAATCCACCGATATGAATTCAAAAATAATCAAAATGGATG
GAATTGAATCAAAAAAACCCGCCTCAAATTCTGAAATTCTCTTGCAAAAT
TGAAAAAATGTTGAAAAATTAAGAAAAAGTGGAAAAAAAATGTGCAATTC
CTTTTGAAAAAAAATTGCGTTTTACCATTTAATTTCTTCCTTTTAAAAAA
AGAAAGGGAATTTTTTTGGTAACCCTTCTCACCTGTCTATATCCTCCCTC
TCCAAAACTTTTTGGGGGGGAAAAAGAAAAAAATTTTTT
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