DY262655

Overview
NameDY262655
Unique NameDY262655
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1289
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_CHLAD (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=gatA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 4.545e-13
Identity = 45/123 (36.59%), Postives = 60/123 (48.78%), Query Frame = 1
Query:  412 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVG---WFARDPKILRHV--GH 765
            L+  G   IGK   DEFA   +  N  Y   TNP   S++P               V  +LG DT G +R P+A CGI G +P+YG VS  G+I   +SLD +G   W   D  ++ +V  GH
Sbjct:  112 LLAAGTVLIGKLNCDEFAMGSSTENSAYQITTNPWDTSRVPGGSSGGSAAAVAAGQVPATLGTDTGGSIRQPAALCGISGLKPTYGRVSRYGLIAYGSSLDQIGPMAWTVADLALIMNVIAGH 234          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_BRAHW (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Brachyspira hyodysenteriae (strain ATCC 49526 / WA1) GN=gatA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 4.545e-13
Identity = 39/111 (35.14%), Postives = 59/111 (53.15%), Query Frame = 1
Query:  412 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPK 744
            L++ GA  IG+T +DEFA        +Y    NP   + +P             +    +LG DT G +R P++FCGI+G +P+YG V  +G I +++SLD VG   +D K
Sbjct:  113 LIDNGAIIIGRTNMDEFAMGGTTETSNYGVTRNPKNRAHVPGGSSGGSAAAVAANFAFGALGSDTGGSIRQPASFCGIVGVKPTYGRVPRLGCIAMASSLDQVGPLTKDVK 223          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_AZOSE (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Azoarcus sp. (strain EbN1) GN=gatA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 4.545e-13
Identity = 48/147 (32.65%), Postives = 66/147 (44.90%), Query Frame = 1
Query:  289 TGLSFAVSDLFDIEGYVTGFGHPEWXXXXXXXXXXXXXXXXLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWF 729
            TG+  A  D+F  EG +T  G                    L   GA  +GKT +DEFA   +  N H+    NP   +++P              LV  + G DT G VR P+A  G+ G +P+YG VS  G+I  ++SLD  G F
Sbjct:   69 TGIPLAHKDVFCTEGVLTTCGSK--MLANFVSPYDAHVVSLLKTAGAVSLGKTNMDEFAMGSSNENSHFGPAKNPWDTTRIPGGSSGGSAAAVAARLVPIATGTDTGGSVRQPAALTGVTGIKPTYGVVSRYGMIAYASSLDQGGAF 213          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_AZOSB (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Azoarcus sp. (strain BH72) GN=gatA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 4.545e-13
Identity = 48/147 (32.65%), Postives = 67/147 (45.58%), Query Frame = 1
Query:  289 TGLSFAVSDLFDIEGYVTGFGHPEWXXXXXXXXXXXXXXXXLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWF 729
            TG+  A  DLF  EG +T  G                    L + GA  +GKT +DEFA   +  + HY    NP   +++P              LV  + G DT G VR P++  G+ G +P+YG VS  G+I  ++SLD  G F
Sbjct:   69 TGIPLAHKDLFCTEGVLTTCGSK--MLADFVSPYDAHVVSRLKDAGAVSLGKTNMDEFAMGSSNESSHYGAVRNPWDTTRIPGGSSGGSAAAVAARLVPLATGSDTGGSVRQPASHTGVTGIKPTYGVVSRYGMIAYASSLDQGGAF 213          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_ACIBY (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Acinetobacter baumannii (strain AYE) GN=gatA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 4.545e-13
Identity = 39/116 (33.62%), Postives = 59/116 (50.86%), Query Frame = 1
Query:  424 GATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVL 771
            G   +GK  +DEFA      + +    +NP A   +P             DL  F+ G DT G +R P++FCG+ G +P+YG VS  GII  ++SLD  G  AR  +   ++ +V+
Sbjct:  115 GLVTLGKVNMDEFAMGSTSESSYVGATSNPWALDHVPGGSSGGSAAAVAADLAPFATGTDTGGSIRQPASFCGLTGLKPTYGRVSRFGIIAYASSLDQAGPMARSAEDCAYLMNVI 230          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_ACIBT (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=gatA PE=3 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 4.545e-13
Identity = 39/116 (33.62%), Postives = 59/116 (50.86%), Query Frame = 1
Query:  424 GATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVL 771
            G   +GK  +DEFA      + +    +NP A   +P             DL  F+ G DT G +R P++FCG+ G +P+YG VS  GII  ++SLD  G  AR  +   ++ +V+
Sbjct:  115 GLVTLGKVNMDEFAMGSTSESSYVGATSNPWALDHVPGGSSGGSAAAVAADLAPFATGTDTGGSIRQPASFCGLTGLKPTYGRVSRFGIIAYASSLDQAGPMARSAEDCAYLMNVI 230          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_ACIBS (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Acinetobacter baumannii (strain SDF) GN=gatA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 4.545e-13
Identity = 39/116 (33.62%), Postives = 59/116 (50.86%), Query Frame = 1
Query:  424 GATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVL 771
            G   +GK  +DEFA      + +    +NP A   +P             DL  F+ G DT G +R P++FCG+ G +P+YG VS  GII  ++SLD  G  AR  +   ++ +V+
Sbjct:  115 GLVTLGKVNMDEFAMGSTSESSYVGATSNPWALDHVPGGSSGGSAAAVAADLAPFATGTDTGGSIRQPASFCGLTGLKPTYGRVSRFGIIAYASSLDQAGPMARSAEDCAYLMNVI 230          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_ACIBC (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Acinetobacter baumannii (strain ACICU) GN=gatA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 4.545e-13
Identity = 39/116 (33.62%), Postives = 59/116 (50.86%), Query Frame = 1
Query:  424 GATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVL 771
            G   +GK  +DEFA      + +    +NP A   +P             DL  F+ G DT G +R P++FCG+ G +P+YG VS  GII  ++SLD  G  AR  +   ++ +V+
Sbjct:  115 GLVTLGKVNMDEFAMGSTSESSYVGATSNPWALDHVPGGSSGGSAAAVAADLAPFATGTDTGGSIRQPASFCGLTGLKPTYGRVSRFGIIAYASSLDQAGPMARSAEDCAYLMNVI 230          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_ACIB5 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Acinetobacter baumannii (strain AB0057) GN=gatA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 4.545e-13
Identity = 39/116 (33.62%), Postives = 59/116 (50.86%), Query Frame = 1
Query:  424 GATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVL 771
            G   +GK  +DEFA      + +    +NP A   +P             DL  F+ G DT G +R P++FCG+ G +P+YG VS  GII  ++SLD  G  AR  +   ++ +V+
Sbjct:  115 GLVTLGKVNMDEFAMGSTSESSYVGATSNPWALDHVPGGSSGGSAAAVAADLAPFATGTDTGGSIRQPASFCGLTGLKPTYGRVSRFGIIAYASSLDQAGPMARSAEDCAYLMNVI 230          
BLAST of DY262655 vs. ExPASy Swiss-Prot
Match: GATA_ACIB3 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Acinetobacter baumannii (strain AB307-0294) GN=gatA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 4.545e-13
Identity = 39/116 (33.62%), Postives = 59/116 (50.86%), Query Frame = 1
Query:  424 GATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVL 771
            G   +GK  +DEFA      + +    +NP A   +P             DL  F+ G DT G +R P++FCG+ G +P+YG VS  GII  ++SLD  G  AR  +   ++ +V+
Sbjct:  115 GLVTLGKVNMDEFAMGSTSESSYVGATSNPWALDHVPGGSSGGSAAAVAADLAPFATGTDTGGSIRQPASFCGLTGLKPTYGRVSRFGIIAYASSLDQAGPMARSAEDCAYLMNVI 230          
The following BLAST results are available for this feature:
BLAST of DY262655 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 302
Match NameE-valueIdentityDescription
GATA_CHLAD4.545e-1336.59Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_BRAHW4.545e-1335.14Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_AZOSE4.545e-1332.65Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_AZOSB4.545e-1332.65Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_ACIBY4.545e-1333.62Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_ACIBT4.545e-1333.62Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_ACIBS4.545e-1333.62Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_ACIBC4.545e-1333.62Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_ACIB54.545e-1333.62Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_ACIB34.545e-1333.62Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100CC10RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262655 ID=DY262655; Name=DY262655; organism=Citrus clementina; type=EST; length=1289bp
CAGCTTCAGGTTGCTCCTCTCCTCCTCGAGCTCTTAGGTTTTGATAGCAG
TGCGTGTGGGTGCTGCTTCCTTGTTTGGTTAAAGTTCAAATTAAGAATTA
TATCGAGTTCCTATATGGCTTCTCAATCTGCTAATTTATGGGTATTGTTG
GGTCTGGGTTTAGCTGGAATTCTGCTAATGACTAAAAAGCTTAAGAAGAA
TATAAAACAAGATTTTGGAGCGTTCATCGAGAAACTTCAACTGCTTCCTC
CGCCTCAGCCCCTTCCTCCAAAAGCCCCTCATCCTCTTACCGGCCTCTCT
TTTGCCGTCTCTGACCTATTCGATATCGAAGGATACGTGACTGGTTTTGG
GCATCCAGAGTGGGCCCGGACGCACAGTGCAGCTTCTCGAACGTCTACTG
TGGTTTCCACCCTCGTCGAAGGAGGTGCCACTTGCATTGGCAAAACTGTG
GTTGATGAATTTGCCTACAGTATAAATGGAACAAATAAGCATTATGATAC
GCCTACTAATCCTGCTGCACCTTCACAAATGCCGGGTGGATCTTCTAGTG
GGGCTGCTGTGGCCGTTGCTGCTGATCTTGTTGATTTCTCCTTGGGTATT
GATACTGTTGGAGGTGTGAGGGTACCTTCTGCATTTTGTGGAATTTTAGG
GTTCCGGCCCTCCTATGGGGCTGTTTCCCACATGGGGATTATACCCATTT
CAACAAGTCTTGATACTGTTGGTTGGTTTGCTAGGGATCCTAAAATTCTG
CGTCATGTTGGCCATGTGTTGCTGCAACTTCCATTTGCAGCTCAACGTAG
TCCAAGACAAATTATAATTGCTGATGATTGTTTTGAGCTCTTGAAGATTC
CTGCTGACAGGGTTGTTCAGGTGGTAATTAAGTCAACTGAGAAACTTTTT
GGGAGACAAGTGTTTGAGCATGAAAACCTCGGAGAATATTTTGAATCTAA
AGTTCCAAGCTTGAAAGGGTTTCACAAAACAAATGGTGAACTAAAAAATG
TTATTGCGTTAAATCCACCGATATGAATTCAAAAATAATCAAAATGGATG
GAATTGAATCAAAAAAACCCGCCTCAAATTCTGAAATTCTCTTGCAAAAT
TGAAAAAATGTTGAAAAATTAAGAAAAAGTGGAAAAAAAATGTGCAATTC
CTTTTGAAAAAAAATTGCGTTTTACCATTTAATTTCTTCCTTTTAAAAAA
AGAAAGGGAATTTTTTTGGTAACCCTTCTCACCTGTCTATATCCTCCCTC
TCCAAAACTTTTTGGGGGGGAAAAAGAAAAAAATTTTTT
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