DY262656

Overview
NameDY262656
Unique NameDY262656
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length754
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262656 vs. ExPASy Swiss-Prot
Match: FCL_MOUSE (GDP-L-fucose synthetase OS=Mus musculus GN=Tsta3 PE=2 SV=3)

HSP 1 Score: 109.383 bits (272), Expect = 2.204e-23
Identity = 65/165 (39.39%), Postives = 96/165 (58.18%), Query Frame = 1
Query:    1 QAYQIQYKFNAISGMPTNLYGPNDNFHPENSHVLPALMRRFHEAKVNGAKEVVVWGTGSPLREFLHVDDLADAVVFMMDEYDGLEH--LNVGSGKEVSIKELAELVKEVVGFEGELVWDSSKPDGTPKKLMDSSKLAG-LGWKAKIELKNGLADTYKWNLENVKQ 486
            +AY  Q+     + +PTN++GP DNF+ E+ HVLP L+ + H AK + +  + VWGTG P R+F++  DLA   ++++ EY  +E   L+VG   EVSIKE AE V E + F GE+ +DS+K DG  KK   + KL   L        K  + +T  W  +N +Q
Sbjct:  155 RAYFQQHGCTFTAVIPTNVFGPYDNFNIEDGHVLPGLIHKVHLAKSSDSA-LTVWGTGKPRRQFIYSLDLARLFIWVLREYSEVEPIILSVGEEDEVSIKEAAEAVVEAMDFNGEVTFDSTKSDGQYKKTASNGKLRSYLPDFRFTPFKQAVKETCTWFTDNYEQ 318          
BLAST of DY262656 vs. ExPASy Swiss-Prot
Match: FCL_DICDI (GDP-L-fucose synthetase OS=Dictyostelium discoideum GN=ger PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.427e-22
Identity = 55/162 (33.95%), Postives = 98/162 (60.49%), Query Frame = 1
Query:    1 QAYQIQYKFNAISGMPTNLYGPNDNFHPENSHVLPALMRRFHEAKVNGAKEVVVWGTGSPLREFLHVDDLADAVVFMMDEYDGLEHL--NVGSGKEVSIKELAELVKEVVGFEGELVWDSSKPDGTPKKLMDSSKLAGLGWKAKI-ELKNGLADTYKWNLEN 477
            +AY  +Y     S +PTN+YGP+DN+H  + HV+P L+ + + A  N  +++ + GTG PLR+F++  DLA   V+ ++ Y+ +  L  +VG   E+SI ++A L+ E + F+G+L++D+SK DG  KK   + KL  L        ++  + ++ +W ++N
Sbjct:  154 RAYNEEYGCKFTSVIPTNIYGPHDNYHLTDGHVIPGLIHKTYLAMKNN-QDLTIMGTGKPLRQFIYSYDLAKYFVWTLNNYEEMSPLILSVGEEDEISIADVARLITEAMEFKGKLIFDTSKADGQYKKTASNLKLKSLVPDLTFTPIQQAIKESCQWFIDN 314          
BLAST of DY262656 vs. ExPASy Swiss-Prot
Match: FCL_DROME (Probable GDP-L-fucose synthetase OS=Drosophila melanogaster GN=Gmer PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.837e-21
Identity = 59/170 (34.71%), Postives = 97/170 (57.06%), Query Frame = 1
Query:    4 AYQIQYKFNAISGMPTNLYGPNDNFHPENSHVLPALMRRFHEAKV------NGAKEVVVWGTGSPLREFLHVDDLADAVVFMMDEYDGLEH--LNVGSGKEVSIKELAELVKEVVGFEGELVWDSSKPDGTPKKLMDSSKLAG-LGWKAKIELKNGLADTYKWNLENVKQ 486
            AY  +Y     S +P N++GP+DN++PE SHV+P ++ R H+            K   V+G+G PLR+F++  DLA+ +++++  Y+ +E   L+    +EV+I E+A+ V +   F G LV D+SK DG  KK   ++KL   L   A  +L+  +  + KW +EN  Q
Sbjct:  149 AYHDKYGRVYTSVIPCNIFGPHDNYNPEVSHVIPGMIYRMHQLVTEKTDVPENDKVFTVFGSGMPLRQFVYSRDLAELMIWVLRNYESVEPIILSADEVQEVTIFEVAQAVAKAFNFNGRLVCDTSKSDGQYKKTASNAKLRSFLPDYAFTDLETAINASVKWYIENYDQ 318          
BLAST of DY262656 vs. ExPASy Swiss-Prot
Match: GALE_METJA (Putative UDP-glucose 4-epimerase OS=Methanocaldococcus jannaschii GN=MJ0211 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.583e-13
Identity = 35/107 (32.71%), Postives = 63/107 (58.88%), Query Frame = 1
Query:  157 VVWGTGSPLREFLHVDDLADAVVFMMDEYDGLEHLNVGSGKEVSIKELAELVKEVVGFEGELVWDSSKPDGTPKKLMDSSKLAGLGWKAKIELKNGLADTYKWNLEN 477
            +++G G+  R+F++V D+A A +  ++  +  E +N+G+GKE S+ EL +++K  +GF GE ++D  +     +  +D  K   LGWK +I+LK G+     W   N
Sbjct:  198 IIFGDGNQTRDFVYVGDVAKANLMALNWKN--EIVNIGTGKETSVNELFDIIKHEIGFRGEAIYDKPREGEVYRIYLDIKKAESLGWKPEIDLKEGIKRVVNWMKNN 302          
BLAST of DY262656 vs. ExPASy Swiss-Prot
Match: TGDS_BOVIN (dTDP-D-glucose 4,6-dehydratase OS=Bos taurus GN=TGDS PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.340e-12
Identity = 49/166 (29.52%), Postives = 84/166 (50.60%), Query Frame = 1
Query:    1 QAYQIQYKFNAISGMPTNLYGPNDNFHPENSHVLPALMRRFHEAKVNGAKEVVVWGTGSPLREFLHVDDLADAVVFMMDEYDGLEHLNVGSGKEVSI----KELAELVKEVVG---FEGELVWDSSKPDGTPKKLMDSSKLAGLGWKAKIELKNGLADTYKWNLEN 477
            Q+Y  QYKF  +    +N+YGP+   +PE   V+P  +     + +   ++  + GTG   R FL+  D+ +A + ++ +    E  N+G+  E+S+    KEL +L+KE       E  + +   +P    +  M S K+ GLGW+ K+  K G+  T +W  EN
Sbjct:  178 QSYWEQYKFPVVITRSSNVYGPHQ--YPEK--VIPKFI-----SLLQHNRKCCIHGTGLQTRNFLYATDVVEAFLTVLKKGKPGEIYNIGTNFEMSVLQLAKELIQLIKETNSESEMENWVDYVDDRPTNDMRYPMKSEKIHGLGWRPKVPWKEGIKKTIEWYREN 334          
BLAST of DY262656 vs. ExPASy Swiss-Prot
Match: TGDS_HUMAN (dTDP-D-glucose 4,6-dehydratase OS=Homo sapiens GN=TGDS PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.985e-12
Identity = 48/166 (28.92%), Postives = 85/166 (51.20%), Query Frame = 1
Query:    1 QAYQIQYKFNAISGMPTNLYGPNDNFHPENSHVLPALMRRFHEAKVNGAKEVVVWGTGSPLREFLHVDDLADAVVFMMDEYDGLEHLNVGSGKEVSI----KELAELVKEVVG---FEGELVWDSSKPDGTPKKLMDSSKLAGLGWKAKIELKNGLADTYKWNLEN 477
            Q+Y  QYKF  +    +N+YGP+   +PE   V+P  +     + +   ++  + G+G   R FL+  D+ +A + ++ +    E  N+G+  E+S+    KEL +L+KE       E  + + + +P    +  M S K+ GLGW+ K+  K G+  T +W  EN
Sbjct:  178 QSYWEQYKFPVVITRSSNVYGPHQ--YPEK--VIPKFI-----SLLQHNRKCCIHGSGLQTRNFLYATDVVEAFLTVLKKGKPGEIYNIGTNFEMSVVQLAKELIQLIKETNSESEMENWVDYVNDRPTNDMRYPMKSEKIHGLGWRPKVPWKEGIKKTIEWYREN 334          
BLAST of DY262656 vs. ExPASy Swiss-Prot
Match: TGDS_MOUSE (dTDP-D-glucose 4,6-dehydratase OS=Mus musculus GN=Tgds PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.603e-11
Identity = 46/166 (27.71%), Postives = 85/166 (51.20%), Query Frame = 1
Query:    1 QAYQIQYKFNAISGMPTNLYGPNDNFHPENSHVLPALMRRFHEAKVNGAKEVVVWGTGSPLREFLHVDDLADAVVFMMDEYDGLEHLNVGSGKEVSI----KELAELVKEVVG---FEGELVWDSSKPDGTPKKLMDSSKLAGLGWKAKIELKNGLADTYKWNLEN 477
            Q+Y  +YKF  +    +N+YGP+   +PE   V+P  +     + +   ++  + G+G   R FL+  D+ +A + ++ + +  E  N+G+  E+S+    KEL +L+KE       E  + + S +P    +  M S K+  LGWK K+  + G+  T +W  +N
Sbjct:  178 QSYWERYKFPVVITRSSNVYGPHQ--YPER--VIPKFI-----SLLQHNRKCCIHGSGLQRRNFLYAADVVEAFLTVLTKGEPGEIYNIGTNFEMSVVQLAKELIQLIKETNSESETESWVDYVSDRPHNDMRYPMKSEKIHSLGWKPKVPWEEGIKKTVEWYRKN 334          
The following BLAST results are available for this feature:
BLAST of DY262656 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
FCL_MOUSE2.204e-2339.39GDP-L-fucose synthetase OS=Mus musculus GN=Tsta3 P... [more]
FCL_DICDI5.427e-2233.95GDP-L-fucose synthetase OS=Dictyostelium discoideu... [more]
FCL_DROME7.837e-2134.71Probable GDP-L-fucose synthetase OS=Drosophila mel... [more]
GALE_METJA1.583e-1332.71Putative UDP-glucose 4-epimerase OS=Methanocaldoco... [more]
TGDS_BOVIN1.340e-1229.52dTDP-D-glucose 4,6-dehydratase OS=Bos taurus GN=TG... [more]
TGDS_HUMAN2.985e-1228.92dTDP-D-glucose 4,6-dehydratase OS=Homo sapiens GN=... [more]
TGDS_MOUSE9.603e-1127.71dTDP-D-glucose 4,6-dehydratase OS=Mus musculus GN=... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100CC11RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262656 ID=DY262656; Name=DY262656; organism=Citrus clementina; type=EST; length=754bp
CAGGCTTATCAGATTCAGTATAAATTCAATGCAATTTCTGGGATGCCCAC
GAATTTATATGGCCCCAATGATAATTTCCACCCCGAAAACTCCCACGTGT
TACCCGCTTTGATGAGGAGATTCCACGAAGCTAAGGTGAATGGAGCTAAG
GAAGTGGTGGTGTGGGGCACTGGCAGTCCGTTAAGGGAGTTCTTACACGT
TGATGATTTGGCTGATGCAGTGGTTTTCATGATGGACGAGTATGATGGAC
TTGAACATTTGAATGTGGGGAGTGGGAAGGAAGTGAGCATTAAAGAGTTG
GCGGAGTTGGTGAAGGAAGTAGTGGGATTTGAAGGAGAGCTTGTTTGGGA
TTCATCCAAGCCAGATGGAACGCCGAAAAAGCTGATGGATAGTTCTAAGC
TTGCCGGGTTGGGGTGGAAGGCAAAAATTGAGCTTAAAAATGGTCTTGCT
GATACTTATAAGTGGAACTTGGAGAATGTTAAGCAATGCTGGGTATTAAC
CTGGGTTCATTTTTGTGGTTGTTTTATTAAAATTTATGGGTTTCATTTTG
AAAAATAAGAAATTGATTGGGGGGCCTTTATGAATTAAAGGGTTGTTATA
ATTAAGGGAAAAGAAAAGGTGGAAAAAAATAATTGGGGAACCAAAATTTT
TTGGTTTGGAAATTGGAAAAAAAATAAACCAATTTTTTTTTTGGGGGTTT
TTTAAATTGGGGTTTTCTGGAGAAAAAAATCTTAAATTTTTTGTTTGTTT
ATCT
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